<p>Upland forest soils are typically a net methane (CH<sub>4</sub>) sink, while trees may act as CH<sub>4</sub> sources. Studies on tree CH<sub>4</sub> exchange in boreal forests, especially regarding canopies, are rare. We aimed to quantify the contribution of trees to the forest CH<sub>4</sub> budget during spring leaf-out period and to reveal the role of microbes in the CH<sub>4</sub> exchange of trees. We measured stem and shoot fluxes of two common boreal tree species at a fen and at an upland site at Hyyti&#228;l&#228;, southern Finland, together with soil CH<sub>4</sub> flux, environmental variables and the abundances methanogens and methanotrophs within the forest. Both birch (<em>Betula pubescens</em>) and spruce (<em>Picea abies</em>) trees emitted CH<sub>4</sub> from their aboveground surfaces, with significantly higher stem emissions detected from the birch and higher shoot emissions from the spruce. The shoot CH<sub>4</sub> exchange had no clear link to the vertical profile of the canopy or the progress of the leaf-out. The stem CH<sub>4</sub> emissions from birches at the fen were high (mean 45 &#181;g h<sup>&#8722;</sup><sup>1</sup> m<sup>&#8722;</sup><sup>2</sup>) and decreased drastically with stem height. Their dynamics followed soil temperature, suggesting the emitted CH<sub>4</sub> originated from the soil. A lack of similar pattern in the fen spruces and in the upland birch indicates other processes behind the stem CH<sub>4</sub> fluxes of these trees. The lack of detection of methanogens or methanotrophs in the aboveground plant tissues suggest that the observed tree-derived CH<sub>4 </sub>fluxes were not induced by these microbes. The emitted CH<sub>4</sub> from the tree stems may, however, be produced microbially in the soil indicating that physiological differences in tree anatomy or adaptation to different belowground conditions might be a key factor explaining the differences between the tree species.</p><p>Acknowledgements: This research was supported Academy of Finland (288494, 2884941), National Centre of Excellence (272041), ICOS-FINLAND (281255), Helsinki Institute of Life Science (HiLIFE), Czech Science Foundation (17-18112Y) and National Sustainability Program I (LO1415), and the European Research Council (ERC) under Horizon 2020 research and innovation programme, grant agreement No (757695).</p>