Parallel CUDA-Based Protein 3D Structure Similarity Searching

SpringerBriefs in Computer Science - High-Performance Computational Solutions in Protein Bioinformatics ◽

10.1007/978-3-319-06971-5_3 ◽

2014 ◽

pp. 49-79

Author(s):

Dariusz Mrozek

Keyword(s):

3D Structure ◽

Similarity Searching ◽

Protein 3D Structure ◽

Structure Similarity

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A novel method for protein 3D-structure similarity measure based on n-gram modeling

2008 8th IEEE International Conference on BioInformatics and BioEngineering ◽

10.1109/bibe.2008.4696719 ◽

2008 ◽

Author(s):

Jafar Razmara ◽

Safaai B. Deris

Keyword(s):

Similarity Measure ◽

3D Structure ◽

Protein 3D Structure ◽

Novel Method ◽

Structure Similarity ◽

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Recent Progress in Protein 3D Structure Comparison

Current Protein and Peptide Science ◽

10.2174/1389203023380530 ◽

2002 ◽

Vol 3 (4) ◽

pp. 441-449 ◽

Author(s):

Oliviero Carugo ◽

Sandor Pongor

Keyword(s):

Recent Progress ◽

3D Structure ◽

Structure Comparison ◽

Protein 3D Structure

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SASA-Net: A spatial-aware self-attention mechanism for building protein 3D structure directly from inter-residue distances

10.1109/bibm52615.2021.9669346 ◽

2021 ◽

Author(s):

Tiansu Gong ◽

Fusong Ju ◽

Shiwei Sun ◽

Dongbo Bu

Keyword(s):

3D Structure ◽

Attention Mechanism ◽

Protein 3D Structure

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RNA and protein 3D structure modeling: similarities and differences

Journal of Molecular Modeling ◽

10.1007/s00894-010-0951-x ◽

2011 ◽

Vol 17 (9) ◽

pp. 2325-2336 ◽

Author(s):

Kristian Rother ◽

Magdalena Rother ◽

Michał Boniecki ◽

Tomasz Puton ◽

Janusz M. Bujnicki

Keyword(s):

3D Structure ◽

Structure Modeling ◽

Protein 3D Structure ◽

3D Structure Modeling ◽

Similarities And Differences

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Intelligent Protein 3D Structure Retrieval System

Lecture Notes in Computer Science - Foundations of Intelligent Systems ◽

10.1007/978-3-540-39592-8_16 ◽

2003 ◽

pp. 108-115 ◽

Author(s):

Yiqiang Chen ◽

Wen Gao ◽

Lijuan Duan ◽

Xiang Chen ◽

Charles X. Ling

Keyword(s):

Retrieval System ◽

3D Structure ◽

Protein 3D Structure

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Improving Performance of Protein Structure Similarity Searching by Distributing Computations in Hierarchical Multi-Agent System

Computational Collective Intelligence. Technologies and Applications - Lecture Notes in Computer Science ◽

10.1007/978-3-642-16693-8_34 ◽

2010 ◽

pp. 320-329 ◽

Author(s):

Alina Momot ◽

Bożena Małysiak-Mrozek ◽

Stanisław Kozielski ◽

Dariusz Mrozek ◽

Łukasz Hera ◽

...

Keyword(s):

Protein Structure ◽

Similarity Searching ◽

Multi Agent System ◽

Agent System ◽

Multi Agent ◽

Structure Similarity

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Server-Side Query Language for Protein Structure Similarity Searching

Advances in Intelligent and Soft Computing - Human – Computer Systems Interaction: Backgrounds and Applications 2 ◽

10.1007/978-3-642-23172-8_26 ◽

2012 ◽

pp. 395-415 ◽

Author(s):

B. Małysiak-Mrozek ◽

S. Kozielski ◽

D. Mrozek

Keyword(s):

Protein Structure ◽

Query Language ◽

Similarity Searching ◽

Server Side ◽

Structure Similarity

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1P241 An exhaustive modeling and evaluation system in protein 3D structure prediction pipeline FORTE-SUITE(Bioinformatics-structural genomics,Poster Presentations)

Seibutsu Butsuri ◽

10.2142/biophys.47.s83_4 ◽

2007 ◽

Vol 47 (supplement) ◽

pp. S83

Author(s):

Chie Motono ◽

Takatsugu Hirokawa ◽

Miwa Sato ◽

Yasuhiro Fujihara ◽

Kiyotaka Kisoo ◽

...

Keyword(s):

Structural Genomics ◽

Structure Prediction ◽

Evaluation System ◽

3D Structure ◽

Protein 3D Structure ◽

3D Structure Prediction ◽

Poster Presentations

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Fast Similarity Search for Protein 3D Structure Databases Using Spatial Topological Patterns

Lecture Notes in Computer Science - Database and Expert Systems Applications ◽

10.1007/978-3-540-30075-5_74 ◽

2004 ◽

pp. 771-780 ◽

Author(s):

Sung-Hee Park ◽

Keun Ho Ryu

Keyword(s):

Similarity Search ◽

3D Structure ◽

Protein 3D Structure ◽

Structure Databases

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An improved convex and concave index for revealing the exposure degree of atoms in protein 3D structure

International Journal of Computational Biology and Drug Design ◽

10.1504/ijcbdd.2017.088135 ◽

2017 ◽

Vol 10 (4) ◽

pp. 331

Author(s):

Xiao Wang ◽

Jian Zhao ◽

Yujiao Yan ◽

Jingye Qian ◽

Ping Han ◽

...

Keyword(s):

3D Structure ◽

Protein 3D Structure ◽

Exposure Degree

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