Taxonomical Classification of Closely Related Reads of Genus Bacillus

2011 ◽  
pp. 395-404
Author(s):  
Wenmin Wang
Keyword(s):  
Genus Bacillus ◽  
Taxonomical Classification

Taxonomical Classification of Web Usage Mining Applications and its Ontological Representation

2018 ◽  
Vol 7 (3) ◽  
pp. 39-43
Author(s):  
Satyaveer Singh ◽  
Mahendra Singh Aswal
Keyword(s):  
Web Usage Mining ◽  
Web Usage ◽  
Navigation Patterns ◽  
Product Recommendations ◽  
Taxonomical Classification ◽  
The Comparative Study ◽  
The Web ◽  
Real World Problems

Web usage mining is used to find out fascinating consumer navigation patterns which can be applied to a lot of real-world problems, such as enriching websites or pages, generating newly topic or product recommendations and consumer behavior studies, etc. In this paper, an attempt has been made to provide a taxonomical classification of web usage mining applications with two levels of hierarchy. Further, the ontology for various categories of the web usage mining applications has been developed and to prove the completeness of proposed taxonomy, a rigorous case study has been performed. The comparative study with other existing classifications of web usage mining applications has also been performed.

Evaluation of rice and sugarcane SSR markers for phylogenetic and genetic diversity analyses in bambooIHBT Publication No. 0732.

Genome ◽  
2008 ◽  
Vol 51 (2) ◽  
pp. 91-103 ◽  
Author(s):  
R. K. Sharma ◽  
P. Gupta ◽  
V. Sharma ◽  
A. Sood ◽  
T. Mohapatra ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Ssr Markers ◽  
Large Scale ◽  
Bamboo Species ◽  
Ssr Primers ◽  
Taxonomical Classification ◽  
High Level ◽  
The Tropics ◽  
Diversity Studies

Simple sequence repeat (SSR) markers are valuable tools for many purposes such as phylogenetic, fingerprinting, and molecular breeding studies. However, only a few SSR markers are known and available in bamboo species of the tropics ( Bambusa spp.). Considering that grass genomes have co-evolved and share large-scale synteny, theoretically it should be possible to use the genome sequence based SSR markers of field crops such as rice ( Oryza sativa ) and sugarcane ( Saccharum spp.) for genome analysis in bamboo. To test this, 98 mapped SSR primers representing 12 linkage groups of rice and 20 EST-derived sugarcane SSR primers were evaluated for transferability to 23 bamboo species. Of the tested markers, 44 (44.9%) rice and 15 (75%) sugarcane SSR primers showed repeatable amplification in at least one species of bamboo and thus were successfully utilized for phylogenetic and genetic diversity analyses. Transferred SSR primers revealed complex amplification patterns in bamboo, with an average of 9.62 fragments per primer, indicating a high level of polyploidy and genetic variability in bamboo. Forty-two of these primers (34 rice and 8 sugarcane SSR primers) detected an average of 2.12 unique fragments per primer and thus could be exploited for species identification. Six bamboo SSR primers exhibited cross transferability, to varying degrees, to different bamboo species. The genetic similarity coefficient indicated a high level of divergence at the species level (73%). However, a relatively low level of diversity was observed within species (25% in 20 accessions of Dendrocalamus hamiltonii ). Further, cluster analysis revealed that the major grouping was in accordance with the taxonomical classification of bamboo. Thus, the rice and sugarcane SSRs can be utilized for phylogenetic and genetic diversity studies in bamboo.

Taxonomical Classification of the Guinea Pig Based on Its Cu/Zn Superoxide Dismutase Sequence

1993 ◽  
Vol 374 (7-12) ◽  
pp. 641-650 ◽  
Author(s):  
Bernhard WOLF ◽  
Kurt REINECKE ◽  
Klaus-Dieter AUMANN ◽  
Regina BRIGELIUS-FLOHÉ ◽  
Leopold FLOHÉ
Keyword(s):  
Superoxide Dismutase ◽  
Guinea Pig ◽  
Taxonomical Classification

scholarly journals Prevalence of Hepatitis B in Blood Groups and Level of Education of Blood Donors in Al-Najaf Governorate

2021 ◽  
Vol 17 (4) ◽  
pp. 735-739
Author(s):  
Pritee Chunarkar Patil ◽  
Darshit Ashokkumar Patel ◽  
Vidya Sunil Tale
Keyword(s):  
Blood Donors ◽  
Dam Reservoir ◽  
Bacterial Composition ◽  
Biochemical Processes ◽  
Taxonomical Classification ◽  
Seasonal Analysis ◽  
Almost All ◽  
Taxonomic Characterization

Advancement in sequencing techniques and transformative progress in metagenomics provides an unprecedented platform for functional and taxonomic characterization of the enormous microbial diversity inhabiting and governing various biochemical processes of the freshwater sources. Metagenomic analysis of freshwater resources has led to the discovery and identification of novel microbial genes and an understanding of how microorganisms mediate energy and carbon. In this study, we report the taxonomical classification of bacterial sequences obtained from 6 dam reservoir sites in Pune city, Maharashtra, India. The analysis was performed using two different alignment tools: BLAST and Kaiju. The bacterial diversity was dominated by the presence of Vogecella indigofera, uncultured Proteobacterium, Wolinella Succinogenes, Chromobacterium violaceum, and Heliobacter billis. It was further observed that, despite an identical bacterial composition over various reservoir sites, there were nominal differences in the relative abundance of the inhabitant species. Almost all reservoirs were dominated by Vogecella indigofera (~29%) and uncultured Proteobacterium (~15%). A seasonal analysis performed using BLAST resulted in a number of species exclusive to the season and the site of their growth. A high proportion of unidentified sequences were also reported which demands sequential identification. The results obtained through BLAST and Kaiju, were significantly different, suggesting inconsistencies and inaccuracies in existing metagenomic reads comparison.

scholarly journals Revisiting the taxonomical classification of Porcine Circovirus type 2 (PCV2): still a real challenge

2015 ◽  
Vol 12 (1) ◽  
Author(s):  
Giovanni Franzo ◽  
Martí Cortey ◽  
Alex Olvera ◽  
Dinko Novosel ◽  
Alessandra Marnie Martins Gomes De Castro ◽  
...  
Keyword(s):  
Porcine Circovirus Type ◽  
Porcine Circovirus Type 2 ◽  
Porcine Circovirus ◽  
Taxonomical Classification ◽  
Real Challenge

scholarly journals The last pieces of the primitive inner belt puzzle: Klio, Chaldaea, Chimaera, and Svea

2019 ◽  
Vol 630 ◽  
pp. A141 ◽  
Author(s):  
David Morate ◽  
Julia de León ◽  
Mário De Prá ◽  
Javier Licandro ◽  
Noemí Pinilla-Alonso ◽  
...  
Keyword(s):  
Asteroid Belt ◽  
Main Belt ◽  
Absorption Bands ◽  
Aqueous Alteration ◽  
Visible Spectra ◽  
Main Asteroid Belt ◽  
Taxonomical Classification ◽  
Inner Region ◽  
Near Earth Asteroids

Aims. Several primitive families in the inner region of the main asteroid belt were identified as potential sources for two near-Earth asteroids (NEAs), (101955) Bennu and (162173) Ryugu, targets of the sample-return missions OSIRIS-REx and Hayabusa2, respectively. Four of the families, located at high proper inclinations (i > 10°), have not yet been compositionally studied: Klio, Chaldaea, Chimaera, and Svea. We want to characterize and analyze these families within the context of our PRIMitive Asteroid Spectroscopic Survey (PRIMASS), in order to complete the puzzle of the origins of the two NEAs. Methods. We obtained visible spectra (0.5–0.9 μm) of a total of 73 asteroids within the Klio, Chaldaea, Chimaera, and Svea collisional families, using the instrument OSIRIS at the 10.4 m Gran Telescopio Canarias. We performed a taxonomical classification of these objects, and an analysis of the possible presence of absorption bands related to aqueous alterations, comparing the results with already studied primitive families in the inner main belt. Results. We present here reflectance spectra for 30 asteroids in the Klio family, 15 in Chaldaea, 20 in Chimaera, and 8 in Svea. We show that Klio, Chaldaea, and Chimaera members have moderately red spectral slopes, with aqueous alteration absorption bands centered around 0.7 μm, characteristic of the group of primitive families known as Erigone-like. In contrast, Svea shows no 0.7 μm features, and neutral and blue spectral slopes, and thus is a Polana-like family. While all four families might be related to (162173) Ryugu, the only family studied in this work that might be related to (101955) Bennu is Svea.

Classification of the Genus Bacillus Based on MALDI-TOF MS Analysis of Ribosomal Proteins Coded inS10andspcOperons

2011 ◽  
Vol 59 (10) ◽  
pp. 5222-5230 ◽  
Author(s):  
Yudai Hotta ◽  
Jun Sato ◽  
Hiroaki Sato ◽  
Akifumi Hosoda ◽  
Hiroto Tamura
Keyword(s):  
Ribosomal Proteins ◽  
Genus Bacillus ◽  
Maldi Tof Ms ◽  
Maldi Tof ◽  
Ms Analysis ◽  
Tof Ms
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