Genomic analysis and marker development for the Tsn1 locus in wheat using bin-mapped ESTs and flanking BAC contigs

H.-J. Lu; J.P. Fellers; T.L. Friesen; S.W. Meinhardt; J.D. Faris

doi:10.1007/s00122-006-0215-4

Genomic analysis and marker development for the Tsn1 locus in wheat using bin-mapped ESTs and flanking BAC contigs

Theoretical and Applied Genetics ◽

10.1007/s00122-006-0215-4 ◽

2006 ◽

Vol 112 (6) ◽

pp. 1132-1142 ◽

Cited By ~ 45

Author(s):

H.-J. Lu ◽

J.P. Fellers ◽

T.L. Friesen ◽

S.W. Meinhardt ◽

J.D. Faris

Keyword(s):

Genomic Analysis ◽

Marker Development ◽

Bac Contigs

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Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs

Heredity ◽

10.1038/hdy.2010.36 ◽

2010 ◽

Vol 106 (1) ◽

pp. 78-87 ◽

Cited By ~ 31

Author(s):

C E McInerney ◽

A L Allcock ◽

M P Johnson ◽

D A Bailie ◽

P A Prodöhl

Keyword(s):

Microsatellite Marker ◽

Genomic Analysis ◽

Comparative Genomic Analysis ◽

Comparative Genomic ◽

Marker Development

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Genomic analysis and a consensus chloroplast genome sequence of Prunus yedoensis for DNA marker development

Horticulture Environment and Biotechnology ◽

10.1007/s13580-020-00265-3 ◽

2020 ◽

Vol 61 (5) ◽

pp. 859-867

Author(s):

Neha Samir Roy ◽

Ukhan Jeong ◽

Minho Na ◽

Ik-Young Choi ◽

Eun Ju Cheong

Keyword(s):

Chloroplast Genome ◽

Genome Sequence ◽

Dna Marker ◽

Genomic Analysis ◽

Marker Development ◽

Prunus Yedoensis ◽

Chloroplast Genome Sequence

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Genomic analysis of C-type lectins

Biochemical Society Symposium ◽

10.1042/bss0690059 ◽

2002 ◽

Vol 69 ◽

pp. 59-72 ◽

Cited By ~ 85

Author(s):

Kurt Drickamer ◽

Andrew J. Fadden

Keyword(s):

Biological Effects ◽

Cell Signalling ◽

Genomic Analysis ◽

Binding Activity ◽

Immunoglobulin Superfamily ◽

Carbohydrate Binding ◽

Carbohydrate Recognition ◽

Calcium Dependent ◽

Binding Domains ◽

Carbohydrate Recognition Domains

Many biological effects of complex carbohydrates are mediated by lectins that contain discrete carbohydrate-recognition domains. At least seven structurally distinct families of carbohydrate-recognition domains are found in lectins that are involved in intracellular trafficking, cell adhesion, cell–cell signalling, glycoprotein turnover and innate immunity. Genome-wide analysis of potential carbohydrate-binding domains is now possible. Two classes of intracellular lectins involved in glycoprotein trafficking are present in yeast, model invertebrates and vertebrates, and two other classes are present in vertebrates only. At the cell surface, calcium-dependent (C-type) lectins and galectins are found in model invertebrates and vertebrates, but not in yeast; immunoglobulin superfamily (I-type) lectins are only found in vertebrates. The evolutionary appearance of different classes of sugar-binding protein modules parallels a development towards more complex oligosaccharides that provide increased opportunities for specific recognition phenomena. An overall picture of the lectins present in humans can now be proposed. Based on our knowledge of the structures of several of the C-type carbohydrate-recognition domains, it is possible to suggest ligand-binding activity that may be associated with novel C-type lectin-like domains identified in a systematic screen of the human genome. Further analysis of the sequences of proteins containing these domains can be used as a basis for proposing potential biological functions.

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