Solution structure of a DNA octamer containing the pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting

Magnetic Resonance ◽

Torsion Angle ◽

Solution Structure ◽

Dynamics Simulation ◽

Two Dimensional ◽

Spectral Fitting ◽

Pribnow Box

Solution Structure Studies of the Cobalt Complex of a Bleomycin Functional Model Bound to d(CGCAATTGCG)2by Two-Dimensional Nuclear Magnetic Resonance Methods and Restrained Molecular Dynamics Simulation

Bioconjugate Chemistry ◽

10.1021/bc960065k ◽

1996 ◽

Vol 7 (6) ◽

pp. 670-679 ◽

Cited By ~ 3

Author(s):

Yanwu Yang ◽

Liren Huang ◽

Richard T. Pon ◽

Shu-Fang Cheng ◽

Ding-Kwo Chang ◽

...

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Solution Structure ◽

Cobalt Complex ◽

Functional Model ◽

Dynamics Simulation ◽

Two Dimensional ◽

Restrained Molecular Dynamics

Solution structure of a conserved DNA sequence from the HIV-1 genome: Restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra

Biochemistry ◽

10.1021/bi00212a007 ◽

1993 ◽

Vol 32 (49) ◽

pp. 13419-13431 ◽

Cited By ~ 47

Author(s):

Anwer Mujeeb ◽

Sean M. Kerwin ◽

George L. Kenyon ◽

Thomas L. James

Keyword(s):

Molecular Dynamics ◽

Dna Sequence ◽

Torsion Angle ◽

Nmr Spectra ◽

Solution Structure ◽

Dynamics Simulation ◽

Two Dimensional ◽

Hiv 1 ◽

Restrained Molecular Dynamics

Thermal and Nonthermal Microwave Effects of Ethanol and Hexane-Mixed Solution as Revealed by In Situ Microwave Irradiation Nuclear Magnetic Resonance Spectroscopy and Molecular Dynamics Simulation

The Journal of Physical Chemistry B ◽

10.1021/acs.jpcb.0c06383 ◽

2020 ◽

Vol 124 (43) ◽

pp. 9615-9624

Author(s):

Yugo Tasei ◽

Batsaikhan Mijiddorj ◽

Teruaki Fujito ◽

Izuru Kawamura ◽

Kazuyoshi Ueda ◽

...

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Microwave Irradiation ◽

Dynamics Simulation ◽

Resonance Spectroscopy ◽

Mixed Solution

Structure of lead oxyfluorosilicate glasses: X-ray photoelectron and nuclear magnetic resonance spectroscopy and molecular dynamics simulation

Journal of Non-Crystalline Solids ◽

10.1016/s0022-3093(00)00233-7 ◽

2000 ◽

Vol 272 (2-3) ◽

pp. 103-118 ◽

Cited By ~ 30

Author(s):

Satoshi Hayakawa ◽

Akiyoshi Osaka ◽

Hironori Nishioka ◽

Syuji Matsumoto ◽

Yoshinari Miura

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Nuclear Magnetic Resonance Spectroscopy ◽

Dynamics Simulation ◽

Resonance Spectroscopy ◽

X Ray ◽

Protein Unfolding Transitions in an Intrinsically Unstable Annexin Domain: Molecular Dynamics Simulation and Comparison with Nuclear Magnetic Resonance Data

Biophysical Journal ◽

10.1016/s0006-3495(02)75200-4 ◽

2002 ◽

Vol 83 (2) ◽

pp. 681-698 ◽

Cited By ~ 6

Author(s):

Tru Huynh ◽

Jeremy C. Smith ◽

Alain Sanson

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Protein Unfolding ◽

Nuclear Magnetic Resonance Data ◽

Dynamics Simulation ◽

Magnetic Resonance Data ◽

Resonance Data ◽

Fractional protein dynamics seen by nuclear magnetic resonance spectroscopy: Relating molecular dynamics simulation and experiment

The Journal of Chemical Physics ◽

10.1063/1.3486195 ◽

2010 ◽

Vol 133 (14) ◽

pp. 145101 ◽

Cited By ~ 26

Author(s):

Vania Calandrini ◽

Daniel Abergel ◽

Gerald R. Kneller

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Nuclear Magnetic Resonance Spectroscopy ◽

Protein Dynamics ◽

Dynamics Simulation ◽

Resonance Spectroscopy ◽

Simulation And Experiment

Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear overhauser effect experiments

Journal of Molecular Biology ◽

10.1016/0022-2836(91)80219-k ◽

1991 ◽

Vol 221 (1) ◽

pp. 271-292 ◽

Cited By ~ 26

Author(s):

Uli Schmitz ◽

David A. Pearlman ◽

Thomas L. James

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Solution Structure ◽

Nuclear Overhauser Effect ◽

Matrix Analysis ◽

Two Dimensional ◽

Overhauser Effect ◽

Nuclear Overhauser ◽

Dynamics Simulations

[5] Structure determination and analysis of local bending in an A-tract DNA duplex: Comparison of results from crystallography, nuclear magnetic resonance, and molecular dynamics simulation on d(CGCAAAAATGCG)

Methods in Enzymology - Nuclear Magnetic Resonance and Nucleic Acids ◽

10.1016/s0076-6879(95)61007-3 ◽

1995 ◽

pp. 121-144 ◽

Cited By ~ 15

Author(s):

Matthew A. Young ◽

Jayasharee Srinivasan ◽

Igor Goljer ◽

Surat Kumar ◽

David L. Beveridge ◽

...

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Structure Determination ◽

Dynamics Simulation ◽

Dna Duplex ◽

Comparison Of Results ◽

Deconvoluting Protein (Un)folding Structural Ensembles Using X-Ray Scattering, Nuclear Magnetic Resonance Spectroscopy and Molecular Dynamics Simulation

PLoS ONE ◽

10.1371/journal.pone.0125662 ◽

2015 ◽

Vol 10 (5) ◽

pp. e0125662 ◽

Cited By ~ 8

Author(s):

Alexandr Nasedkin ◽

Moreno Marcellini ◽

Tomasz L. Religa ◽

Stefan M. Freund ◽

Andreas Menzel ◽

...

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Dynamics Simulation ◽

Resonance Spectroscopy ◽

X Ray ◽

X Ray Scattering ◽

Structural Ensembles

Nuclear magnetic resonance and molecular dynamics simulation study on the reorientational relaxation of solutes in supercritical methanol

Journal of Molecular Liquids ◽

10.1016/j.molliq.2004.10.018 ◽

2005 ◽

Vol 119 (1-3) ◽

pp. 119-123 ◽

Cited By ~ 11

Author(s):

Tsuyoshi Yamaguchi ◽

Nobuyuki Matubayasi ◽

Masaru Nakahara

Keyword(s):

Molecular Dynamics ◽

Magnetic Resonance ◽

Simulation Study ◽

Dynamics Simulation ◽

Supercritical Methanol ◽