Evaluation and validation of internal control genes for studying gene expression in the dinoflagellate Prorocentrum minimum using real-time PCR

2012 ◽  
Vol 48 (3) ◽  
pp. 199-206 ◽  
Author(s):  
Ruoyu Guo ◽  
Jang-Seu Ki
Blood ◽  
2011 ◽  
Vol 118 (21) ◽  
pp. 4597-4597
Author(s):  
Wilma Barcellini ◽  
Francesca Guia Imperiali ◽  
Anna Zaninoni ◽  
Gianluigi Reda ◽  
Bruno Fattizzo ◽  
...  

Abstract Abstract 4597 Toll-like receptors (TLRs) are major agents of innate immunity and initiators of adaptive immune response by acting as costimulatory signals for B cells and inducing maturation, proliferation and antibody production after pathogen recognition. They are also involved in the self-antigen recognition and could play a role in autoimmune phenomena. It is well established that B-chronic lymphocytic leukemia (B-CLL) is characterized by an increased incidence of autoimmune phenomena and immunodeficiency, which can greatly influence the disease outcome leading to a variable clinical course. The aim of this study was to evaluate the gene expression of TLRs in 97 B-CLL patients (median age 74 yrs, range 41–89, 41 female and 57 male) and to relate it with the clinical course of the disease (median follow-up 107 months, range 36–336), in particular with infections and autoimmunity, and the expression of prognostic factors (mutational status of IgVH region, CD38 and ZAP70 expression, and cytogenetic alterations). The gene expression of TLR4 and TLR9 was evaluated in total RNA of B cell from B-CLL patients and controls (pool of 10 healthy donors) by real-time PCR performed with a model 7300 real-time PCR system (Applied Biosystems). The TLR4 and TLR9 relative quantification expression (RQ) was normalized according to GAPDH (internal control gene) and to control mRNAs. We found that TLR4 gene expression was decreased (RQ=16.1+/−1.56) and TLR9 increased (RQ=2725+/−165) in B-CLL patients vs controls (RQ=100). TLR4 gene expression was reduced in: a) stage Binet B-C/Rai II-III-IV (n=20) versus low risk cases (Binet A/Rai 0-I) (10.8+/−2.2 vs 17.4+/−1.9, p=0.048); b) patients treated with I line therapy (n=25) and II line therapy (n=14) vs untreated patients (n=58) (13.1+/−2 vs 19.2+/−2.3, p=0.05, and 8.3+/−2.1 vs 19.2+/−2.3, p=0.03, respectively); c) patients untreated but with ITT and treated with stable disease or progressive disease (n=28) vs untreated and treated with DFS>24 months at the time of the investigation (n=69) (12+/−2 vs 17.8+/−2, p=0.048); d) patients with grade 2–4 infections (n=52), according to Common Terminology Criteria for Adverse Events, vs patients with grade 0–1 infections (13.2+/−1.5 vs 19.51+/−2.9, p=0.04); e) patients with autoimmune phenomena (n=12) vs cases without (8.8+/−2.5 vs 17.12+/−1.7, p=0.04). As far as TLR9 is concerned, we found that it was significantly reduced in untreated and treated with II line therapy patients vs patients treated with I line therapy (2549+/−183 vs 3528+/−356, p=0.01, and 1893+/−277 vs 3528+/−356, p=0.01, respectively). Finally, we found that patients with an unmutated IgVH region status (n=15) showed TLR4 gene expression significantly reduced compared with patients with mutated IgVH region status (n=29) (9.57+/−2.1 vs 18.8+/−3.2, p=0.028). (Data are expressed as mean+/−SE for all data). These results show that in B-CLL patients the reduced expression of TLR4 is consistent with a reduced ability to mount a proper immune response and it is even more pronounced in “active” patients that show high prevalence of infectious episodes and autoimmune phenomena. Disclosures: No relevant conflicts of interest to declare.


2011 ◽  
Vol 189 (3) ◽  
pp. 278-283 ◽  
Author(s):  
Veronica Spalenza ◽  
Flavia Girolami ◽  
Claudia Bevilacqua ◽  
Fulvio Riondato ◽  
Roberto Rasero ◽  
...  

2010 ◽  
Vol 37 (1) ◽  
pp. 12-19 ◽  
Author(s):  
Yael Brand ◽  
Ran Hovav

Abstract Real-time qPCR is currently the most sensitive technique available for the detection of low-level mRNA expression. For more reliable and precise gene expression analyses, real-time PCR data for a sequence of interest must be normalized against that of a control gene, which is uniformly expressed in various tissues and during different phases of development. So far, suitable internal controls for gene expression studies in peanut have not been identified. We assessed the expression of 10 frequently used housekeeping genes, specifically ubq10, gapdh, hel1, yls8, 14-3-3, 60s, ubc, ef-1α, act7, and adh3. Using the algorithms available through the GeNorm and NormFinder programs, the stability of their expression was estimated in a set of five diverse peanut tissue samples derived from a Virginia-type peanut cultivar (Shulamit). Collectively, the gene with the most stable expression across all of the examined tissues and both programs was adh3, followed by 60s and yls8, which had minimal estimated intra- and inter-tissue variation. The stability of two stable reference genes (adh3 and yls8) compared with two less stable (14-3-3 and ubq10) reference genes was validated in unpooled tissue samples from five peanut kernel developmental stages. Finally, the effect of the use of one or more reference genes on the observed relative expression levels of an important seed oil metabolism gene, diacylglycerol acyltransferase 1 (Dgat1), during kernel development was demonstrated. Based on findings, the suggestion is that adh3, or a combination of this gene with 60s and yls8 should be considered for use in quantitative mRNA expression analyses in Arachis, particularly in studies involving seed development; whereas ubq10 and gapdh should be avoided.


2014 ◽  
Vol 173 (6) ◽  
pp. 1431-1445 ◽  
Author(s):  
Xiu-Yun Yuan ◽  
Su-Hua Jiang ◽  
Mo-Fei Wang ◽  
Jie Ma ◽  
Xian-Yun Zhang ◽  
...  

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