Qualitative and quantitative proteomics by two-dimensional gel electrophoresis, peptide mass fingerprint and a chemically-coded affinity tag (CCAT)

2003 ◽  
Vol 106 (2-3) ◽  
pp. 287-300 ◽  
Author(s):  
Steven Alexander Watt ◽  
Thomas Patschkowski ◽  
Jörn Kalinowski ◽  
Karsten Niehaus
2001 ◽  
Vol 67 (8) ◽  
pp. 3396-3405 ◽  
Author(s):  
Joanna C. Wilkins ◽  
Karen A. Homer ◽  
David Beighton

ABSTRACT Streptococcus oralis is the predominant aciduric nonmutans streptococcus isolated from the human dentition, but the role of this organism in the initiation and progression of dental caries has yet to be established. To identify proteins that are differentially expressed by S. oralis growing under conditions of low pH, soluble cellular proteins extracted from bacteria grown in batch culture at pH 5.2 or 7.0 were analyzed by two-dimensional (2-D) gel electrophoresis. Thirty-nine proteins had altered expression at low pH; these were excised, digested with trypsin using an in-gel protocol, and further analyzed by peptide mass fingerprinting using matrix-assisted laser desorption ionization mass spectrometry. The resulting fingerprints were compared with the genomic database forStreptococcus pneumoniae, an organism that is phylogenetically closely related to S. oralis, and putative functions for the majority of these proteins were determined on the basis of functional homology. Twenty-eight proteins were up-regulated following growth at pH 5.2; these included enzymes of the glycolytic pathway (glyceraldehyde-3-phosphate dehydrogenase and lactate dehydrogenase), the polypeptide chains comprising ATP synthase, and proteins that are considered to play a role in the general stress response of bacteria, including the 60-kDa chaperone, Hsp33, and superoxide dismutase, and three distinct ABC transporters. These data identify, for the first time, gene products that may be important in the survival and proliferation of nonmutans aciduric S. oralis under conditions of low pH that are likely to be encountered by this organism in vivo.


2002 ◽  
Vol 1 (4) ◽  
pp. 221-230
Author(s):  
Woonyoung Choi ◽  
Sonya W. Song ◽  
Wei Zhang

Proteomics is a rapidly expanding discipline that aims to gain a comprehensive understanding of the expressions, modification, interactions, and regulation of proteins in cells. New high-throughput technologies, such as protein chips and isotope-coded affinity tag peptide labeling, coupled with classic technologies such as two-dimensional gel electrophoresis and mass spectrometry, complement genomic technologies, providing cancer researchers with powerful tools for cancer diagnosis and prognosis and for the identification of targets for therapy.


PROTEOMICS ◽  
2004 ◽  
Vol 4 (7) ◽  
pp. 1939-1949 ◽  
Author(s):  
Julie Fiévet ◽  
Christine Dillmann ◽  
Gilles Lagniel ◽  
Marlène Davanture ◽  
Luc Negroni ◽  
...  

PROTEOMICS ◽  
2005 ◽  
Vol 5 (9) ◽  
pp. 2351-2363 ◽  
Author(s):  
Carine Froment ◽  
Sandrine Uttenweiler-Joseph ◽  
Marie-Pierre Bousquet-Dubouch ◽  
Mariette Matondo ◽  
Jean-Philippe Borges ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document