Parameter estimation and synthesis for systems biology: New algorithms for nonlinear and stochastic models

Journal of Critical Care ◽

10.1016/j.jcrc.2010.12.031 ◽

2011 ◽

Vol 26 (2) ◽

pp. e8 ◽

Author(s):

Sumit Jha ◽

Alexandre Donze ◽

Rupinder Khandpur ◽

Joyeeta Dutta-Moscato ◽

Qi Mi ◽

...

Keyword(s):

Parameter Estimation ◽

Systems Biology ◽

Stochastic Models ◽

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A termination criterion for parameter estimation in stochastic models in systems biology

10.1016/j.biosystems.2015.08.003 ◽

2015 ◽

Vol 137 ◽

pp. 55-63 ◽

Author(s):

Christoph Zimmer ◽

Sven Sahle

Keyword(s):

Parameter Estimation ◽

Systems Biology ◽

Stochastic Models ◽

Termination Criterion

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Evaluation of Parallel Tempering to Accelerate Bayesian Parameter Estimation in Systems Biology

2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP) ◽

10.1109/pdp2018.2018.00114 ◽

2018 ◽

Author(s):

Sanjana Gupta ◽

Liam Hainsworth ◽

Justin Hogg ◽

Robin Lee ◽

James Faeder

Keyword(s):

Parameter Estimation ◽

Systems Biology ◽

Parallel Tempering ◽

Bayesian Parameter Estimation

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SBML-PET: a Systems Biology Markup Language-based parameter estimation tool

Bioinformatics ◽

10.1093/bioinformatics/btl443 ◽

2006 ◽

Vol 22 (21) ◽

pp. 2704-2705 ◽

Author(s):

Z. Zi ◽

E. Klipp

Keyword(s):

Parameter Estimation ◽

Systems Biology ◽

Markup Language ◽

Systems Biology Markup Language

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Systems biology: parameter estimation for biochemical models

FEBS Journal ◽

10.1111/j.1742-4658.2008.06844.x ◽

2009 ◽

Vol 276 (4) ◽

pp. 886-902 ◽

Author(s):

Maksat Ashyraliyev ◽

Yves Fomekong-Nanfack ◽

Jaap A. Kaandorp ◽

Joke G. Blom

Keyword(s):

Parameter Estimation ◽

Systems Biology

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Bayesian parameter estimation for stochastic models of biological cell migration

10.1063/1.4819978 ◽

2013 ◽

Author(s):

Peter Dieterich ◽

Roland Preuss

Keyword(s):

Parameter Estimation ◽

Cell Migration ◽

Stochastic Models ◽

Biological Cell ◽

Bayesian Parameter Estimation

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SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology

Computation ◽

10.3390/computation2040246 ◽

2014 ◽

Vol 2 (4) ◽

pp. 246-257 ◽

Author(s):

Alexander Dörr ◽

Roland Keller ◽

Andreas Zell ◽

Andreas Dräger

Keyword(s):

Parameter Estimation ◽

Systems Biology ◽

Model Simulation

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A cooperative strategy for parameter estimation problems in Systems Biology: Preliminary results

2011 11th International Conference on Intelligent Systems Design and Applications ◽

10.1109/isda.2011.6121823 ◽

2011 ◽

Author(s):

Antonio D. Masegosa ◽

Federico Rutolo ◽

David Pelta

Keyword(s):

Parameter Estimation ◽

Systems Biology ◽

Cooperative Strategy ◽

Preliminary Results ◽

Estimation Problems

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Inversion of nonlinear stochastic models for parameter estimation

Proceedings of the 39th IEEE Conference on Decision and Control (Cat. No.00CH37187) ◽

10.1109/cdc.2000.912087 ◽

2002 ◽

Author(s):

O. Markusson ◽

H. Hjalmarsson

Keyword(s):

Parameter Estimation ◽

Stochastic Models

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Two new algorithms for sequential parameter estimation with unknown but bounded noise

10.1109/cdc.1990.203483 ◽

1990 ◽

Author(s):

G. Belforte ◽

T.T. Tay

Keyword(s):

Parameter Estimation ◽

Bounded Noise ◽

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Spectral Based Parameter Estimation in Nonlinear Stochastic Models

IFAC Proceedings Volumes ◽

10.1016/s1474-6670(17)39869-5 ◽

2000 ◽

Vol 33 (15) ◽

pp. 911-916

Author(s):

Ola Markusson ◽

Håkan Hjalmarsson

Keyword(s):

Parameter Estimation ◽

Stochastic Models

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