scholarly journals 3D Registration of pre-surgical prostate MRI and histopathology images via super-resolution volume reconstruction

2021 ◽  
Vol 69 ◽  
pp. 101957
Author(s):  
Rewa R. Sood ◽  
Wei Shao ◽  
Christian Kunder ◽  
Nikola C. Teslovich ◽  
Jeffrey B. Wang ◽  
...  
2021 ◽  
pp. 98-107
Author(s):  
Wei Shao ◽  
Indrani Bhattacharya ◽  
Simon J. C. Soerensen ◽  
Christian A. Kunder ◽  
Jeffrey B. Wang ◽  
...  

2021 ◽  
Author(s):  
Michael J Wester ◽  
David J Schodt ◽  
Hanieh Mazloom-Farsibaf ◽  
Mohamadreza Fazel ◽  
Sandeep Pallikkuth ◽  
...  

We describe a robust, fiducial-free method of drift correction for use in single molecule localization-based super-resolution methods. The method combines periodic 3D registration of the sample using brightfield images with a fast post-processing algorithm that corrects residual registration errors and drift between registration events. The method is robust to low numbers of collected localizations, requires no specialized hardware, and provides stability and drift correction for an indefinite time period.


2021 ◽  
Vol 2021 ◽  
pp. 1-15
Author(s):  
Qian Ni ◽  
Yi Zhang ◽  
Tiexiang Wen ◽  
Ling Li

Slice-to-volume reconstruction (SVR) method can deal well with motion artifacts and provide high-quality 3D image data for fetal brain MRI. However, the problem of sparse sampling is not well addressed in the SVR method. In this paper, we mainly focus on the sparse volume reconstruction of fetal brain MRI from multiple stacks corrupted with motion artifacts. Based on the SVR framework, our approach includes the slice-to-volume 2D/3D registration, the point spread function- (PSF-) based volume update, and the adaptive kernel regression-based volume update. The adaptive kernel regression can deal well with the sparse sampling data and enhance the detailed preservation by capturing the local structure through covariance matrix. Experimental results performed on clinical data show that kernel regression results in statistical improvement of image quality for sparse sampling data with the parameter setting of the structure sensitivity 0.4, the steering kernel size of 7 × 7 × 7 and steering smoothing bandwidth of 0.5. The computational performance of the proposed GPU-based method can be over 90 times faster than that on CPU.


2012 ◽  
Vol 132 (3) ◽  
pp. 2088-2088
Author(s):  
Jonghye Woo ◽  
Xinhui Zhou ◽  
Maureen Stone ◽  
Jerry L. Prince ◽  
Carol Y. Espy-Wilson

Author(s):  
Mahdiyar Molahasani Majdabadi ◽  
Younhee Choi ◽  
S. Deivalakshmi ◽  
Seokbum Ko

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Michael J. Wester ◽  
David J. Schodt ◽  
Hanieh Mazloom-Farsibaf ◽  
Mohamadreza Fazel ◽  
Sandeep Pallikkuth ◽  
...  

AbstractWe describe a robust, fiducial-free method of drift correction for use in single molecule localization-based super-resolution methods. The method combines periodic 3D registration of the sample using brightfield images with a fast post-processing algorithm that corrects residual registration errors and drift between registration events. The method is robust to low numbers of collected localizations, requires no specialized hardware, and provides stability and drift correction for an indefinite time period.


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