scholarly journals Single-Particle Tracking for the Quantification of Membrane Protein Dynamics in Living Plant Cells

2018 ◽  
Vol 11 (11) ◽  
pp. 1315-1327 ◽  
Author(s):  
Yaning Cui ◽  
Meng Yu ◽  
Xiaomin Yao ◽  
Jingjing Xing ◽  
Jinxing Lin ◽  
...  
2015 ◽  
Vol 10 (12) ◽  
pp. 2054-2063 ◽  
Author(s):  
Xiaohua Wang ◽  
Xiaojuan Li ◽  
Xin Deng ◽  
Doan-Trung Luu ◽  
Christophe Maurel ◽  
...  

2016 ◽  
Author(s):  
David Albrecht ◽  
Christian M. Winterflood ◽  
Thomas Tschager ◽  
Helge Ewers

AbstractThe axon initial segment (AIS) is enriched in specific adaptor, cytoskeletal and transmembrane molecules. During AIS establishment, a membrane diffusion barrier is formed between the axon and the somatodendritic domain. Recently, an axonal periodic pattern of actin, spectrin and ankyrin forming 190 nm distanced, ring-like structures has been discovered. However, whether this structure is related to the diffusion barrier function is unclear.Here, we performed single particle tracking timecourse experiments on hippocampal neurons during AIS development. We analyzed the mobility of lipid-anchored molecules by high-speed single particle tracking and correlated positions of membrane molecules with the nanoscopic organization of the AIS cytoskeleton.We observe a strong reduction in mobility early in AIS development. Membrane protein motion in the AIS plasma membrane is confined to a repetitive pattern of ~190 nm spaced segments along the AIS axis as early as DIV4 and this pattern alternates with actin rings. Our data provide a new model for the mechanism of the AIS diffusion barrier.


2016 ◽  
Vol 215 (1) ◽  
pp. 37-46 ◽  
Author(s):  
David Albrecht ◽  
Christian M. Winterflood ◽  
Mohsen Sadeghi ◽  
Thomas Tschager ◽  
Frank Noé ◽  
...  

The axon initial segment (AIS) is enriched in specific adaptor, cytoskeletal, and transmembrane molecules. During AIS establishment, a membrane diffusion barrier is formed between the axonal and somatodendritic domains. Recently, an axonal periodic pattern of actin, spectrin, and ankyrin forming 190-nm-spaced, ring-like structures has been discovered. However, whether this structure is related to the diffusion barrier function is unclear. Here, we performed single-particle tracking time-course experiments on hippocampal neurons during AIS development. We analyzed the mobility of lipid-anchored molecules by high-speed single-particle tracking and correlated positions of membrane molecules with the nanoscopic organization of the AIS cytoskeleton. We observe a strong reduction in mobility early in AIS development. Membrane protein motion in the AIS plasma membrane is confined to a repetitive pattern of ∼190-nm-spaced segments along the AIS axis as early as day in vitro 4, and this pattern alternates with actin rings. Mathematical modeling shows that diffusion barriers between the segments significantly reduce lateral diffusion along the axon.


Nanoscale ◽  
2018 ◽  
Vol 10 (21) ◽  
pp. 10241-10249 ◽  
Author(s):  
Souvik Modi ◽  
Nathalie F. Higgs ◽  
David Sheehan ◽  
Lewis D. Griffin ◽  
Josef T. Kittler

An anti-GFP nanobody conjugated QD optical probe was applied to study single particle trackingin vitroandex vivo. This small, highly specific probe recognized GFP when expressed at the cell membrane and reported diffusion dynamics of the underlying target protein.


Entropy ◽  
2021 ◽  
Vol 23 (5) ◽  
pp. 498
Author(s):  
Chen Zhang ◽  
Kevin Welsher

In this work, we present a 3D single-particle tracking system that can apply tailored sampling patterns to selectively extract photons that yield the most information for particle localization. We demonstrate that off-center sampling at locations predicted by Fisher information utilizes photons most efficiently. When performing localization in a single dimension, optimized off-center sampling patterns gave doubled precision compared to uniform sampling. A ~20% increase in precision compared to uniform sampling can be achieved when a similar off-center pattern is used in 3D localization. Here, we systematically investigated the photon efficiency of different emission patterns in a diffraction-limited system and achieved higher precision than uniform sampling. The ability to maximize information from the limited number of photons demonstrated here is critical for particle tracking applications in biological samples, where photons may be limited.


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