scholarly journals Polyphasic taxonomy of the genus Talaromyces

2014 ◽  
Vol 78 ◽  
pp. 175-341 ◽  
Author(s):  
N. Yilmaz ◽  
C.M. Visagie ◽  
J. Houbraken ◽  
J.C. Frisvad ◽  
R.A. Samson
Keyword(s):  
Polyphasic Taxonomy

Morphological studies in Rosellinia (Xylariaceae): the first step towards a polyphasic taxonomy

2005 ◽  
Vol 109 (5) ◽  
pp. 569-580 ◽  
Author(s):  
Lillane E. Petrini ◽  
Orlando Petrini
Keyword(s):  
Polyphasic Taxonomy ◽  
Morphological Studies

Polyphasic Taxonomy of a Novel Halobacillus, Halobacillus thailandensis sp. nov. Isolated from Fish Sauce

1999 ◽  
Vol 22 (3) ◽  
pp. 360-365 ◽  
Author(s):  
Saipin Chaiyanan ◽  
Sitthipan Chaiyanan ◽  
Tim Maugel ◽  
Anwarul Huq ◽  
Frank T. Robb ◽  
...  
Keyword(s):  
Polyphasic Taxonomy ◽  
Fish Sauce

scholarly journals Polyphasic taxonomy of Aspergillus section Aspergillus (formerly Eurotium ), and its occurrence in indoor environments and food

2017 ◽  
Vol 88 ◽  
pp. 37-135 ◽  
Author(s):  
A.J. Chen ◽  
V. Hubka ◽  
J.C. Frisvad ◽  
C.M. Visagie ◽  
J. Houbraken ◽  
...  
Keyword(s):  
Polyphasic Taxonomy ◽  
Indoor Environments ◽  
Aspergillus Section

scholarly journals Polyphasic taxonomy of Aspergillus section Sparsi

IMA Fungus ◽  
2010 ◽  
Vol 1 (2) ◽  
pp. 187-195 ◽  
Author(s):  
János Varga ◽  
Jens C. Frisvad ◽  
Robert A. Samson
Keyword(s):  
Polyphasic Taxonomy ◽  
Aspergillus Section

scholarly journals Wedding higher taxonomic ranks with metabolic signatures coded in prokaryotic genomes

2016 ◽  
Author(s):  
Gregorio Iraola ◽  
Hugo Naya
Keyword(s):  
Best Practices ◽  
Polyphasic Taxonomy ◽  
Bacterial Species ◽  
Genomic Data ◽  
Link Type ◽  
Prokaryotic Genomes ◽  
Functional Features ◽  
Definition Of ◽  
Ecological Coherence ◽  
Metabolic Signatures

Taxonomy of prokaryotes has remained a controversial discipline due to the extreme plasticity of microorganisms, causing inconsistencies between phenotypic and genotypic classifications. The genomics era has enhanced taxonomy but also opened new debates about the best practices for incorporating genomic data into polyphasic taxonomy protocols, which are fairly biased towards the identification of bacterial species. Here we use an extensive dataset of Archaea and Bacteria to prove that metabolic signatures coded in their genomes are informative traits that allow to accurately classify organisms coherently to higher taxonomic ranks, and to associate functional features with the definition of taxa. Our results support the ecological coherence of higher taxonomic ranks and reconciles taxonomy with traditional chemotaxonomic traits inferred from genomes. KARL, a simple and free tool useful for assisting polyphasic taxonomy or to perform functional prospections is also presented (https://github.com/giraola/KARL).

Polyphasic taxonomy of Aspergillus fumigatus and related species

Mycologia ◽  
2005 ◽  
Vol 97 (6) ◽  
pp. 1316-1329 ◽  
Author(s):  
S.-B. Hong ◽  
S.-J. Go ◽  
H.-D. Shin ◽  
J. C. Frisvad ◽  
R. A. Samson
Keyword(s):  
Aspergillus Fumigatus ◽  
Polyphasic Taxonomy ◽  
Related Species
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