Structural Insights into the Interaction between Prion Protein and Nucleic Acid†

Biochemistry ◽  
2006 ◽  
Vol 45 (30) ◽  
pp. 9180-9187 ◽  
Author(s):  
Luis Maurício T. R. Lima ◽  
Yraima Cordeiro ◽  
Luzineide W. Tinoco ◽  
Adriana F. Marques ◽  
Cristiano L. P. Oliveira ◽  
...  
Biochemistry ◽  
2012 ◽  
Vol 51 (27) ◽  
pp. 5402-5413 ◽  
Author(s):  
Bruno Macedo ◽  
Thiago A. Millen ◽  
Carolina A. C. A. Braga ◽  
Mariana P. B. Gomes ◽  
Priscila S. Ferreira ◽  
...  

2009 ◽  
Vol 393 (5) ◽  
pp. 1033-1042 ◽  
Author(s):  
Maurizio Polano ◽  
Alpan Bek ◽  
Federico Benetti ◽  
Marco Lazzarino ◽  
Giuseppe Legname

2011 ◽  
Vol 39 (19) ◽  
pp. 8544-8558 ◽  
Author(s):  
Cécile Guichard ◽  
Roland Ivanyi-Nagy ◽  
Kamal Kant Sharma ◽  
Caroline Gabus ◽  
Daniel Marc ◽  
...  
Keyword(s):  

2014 ◽  
Vol 70 (2) ◽  
pp. 354-361 ◽  
Author(s):  
Rob Abdur ◽  
Oksana O. Gerlits ◽  
Jianhua Gan ◽  
Jiansheng Jiang ◽  
Jozef Salon ◽  
...  

The crystal structures of protein–nucleic acid complexes are commonly determined using selenium-derivatized proteinsviaMAD or SAD phasing. Here, the first protein–nucleic acid complex structure determined using selenium-derivatized nucleic acids is reported. The RNase H–RNA/DNA complex is used as an example to demonstrate the proof of principle. The high-resolution crystal structure indicates that this selenium replacement results in a local subtle unwinding of the RNA/DNA substrate duplex, thereby shifting the RNA scissile phosphate closer to the transition state of the enzyme-catalyzed reaction. It was also observed that the scissile phosphate forms a hydrogen bond to the water nucleophile and helps to position the water molecule in the structure. Consistently, it was discovered that the substitution of a single O atom by a Se atom in a guide DNA sequence can largely accelerate RNase H catalysis. These structural and catalytic studies shed new light on the guide-dependent RNA cleavage.


2006 ◽  
Vol 20 (4) ◽  
Author(s):  
Yraima Cordeiro ◽  
Luis Mauricio Lima ◽  
Adriana Marques ◽  
Cristiano Oliveira ◽  
Luzineide Tinoco ◽  
...  

2020 ◽  
Vol 4 (2) ◽  
pp. 155-167
Author(s):  
Jacob I. Ayers ◽  
Nick A. Paras ◽  
Stanley B. Prusiner

Prions were initially discovered in studies of scrapie, a transmissible neurodegenerative disease (ND) of sheep and goats thought to be caused by slow viruses. Once scrapie was transmitted to rodents, it was discovered that the scrapie pathogen resisted inactivation by procedures that modify nucleic acids. Eventually, this novel pathogen proved to be a protein of 209 amino acids, which is encoded by a chromosomal gene. After the absence of a nucleic acid within the scrapie agent was established, the mechanism of infectivity posed a conundrum and eliminated a hypothetical virus. Subsequently, the infectious scrapie prion protein (PrPSc) enriched for β-sheet was found to be generated from the cellular prion protein (PrPC) that is predominantly α-helical. The post-translational process that features in nascent prion formation involves a templated conformational change in PrPC that results in an infectious copy of PrPSc. Thus, prions are proteins that adopt alternative conformations, which are self-propagating and found in organisms ranging from yeast to humans. Prions have been found in both Alzheimer's (AD) and Parkinson's (PD) diseases. Mutations in APP and α-synuclein genes have been shown to cause familial AD and PD. Recently, AD was found to be a double prion disorder: both Aβ and tau prions feature in this ND. Increasing evidence argues for α-synuclein prions as the cause of PD, multiple system atrophy, and Lewy body dementia.


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