scholarly journals Self-compatibility in peach [Prunus persica (L.) Batsch]: patterns of diversity surrounding the S-locus and analysis of SFB alleles

2020 ◽  
Vol 7 (1) ◽  
Author(s):  
Donia Abdallah ◽  
Ghada Baraket ◽  
Veronica Perez ◽  
Amel Salhi Hannachi ◽  
Jose I. Hormaza
Keyword(s):  
Prunus Persica ◽  
Evolutionary Process ◽  
Population Expansion ◽  
Purifying Selection ◽  
Evolutionary Analysis ◽  
Self Incompatibility ◽  
S Locus ◽  
Irreversible Loss ◽  
Self Compatibility ◽  
Negative Frequency Dependent Selection

Abstract Self-incompatibility (SI) to self-compatibility (SC) transition is one of the most frequent and prevalent evolutionary shifts in flowering plants. Prunus L. (Rosaceae) is a genus of over 200 species most of which exhibit a Gametophytic SI system. Peach [Prunus persica (L.) Batsch; 2n = 16] is one of the few exceptions in the genus known to be a fully self-compatible species. However, the evolutionary process of the complete and irreversible loss of SI in peach is not well understood and, in order to fill that gap, in this study 24 peach accessions were analyzed. Pollen tube growth was controlled in self-pollinated flowers to verify their self-compatible phenotypes. The linkage disequilibrium association between alleles at the S-locus and linked markers at the end of the sixth linkage group was not significant (P > 0.05), except with the closest markers suggesting the absence of a signature of negative frequency dependent selection at the S-locus. Analysis of SFB1 and SFB2 protein sequences allowed identifying the absence of some variable and hypervariable domains and the presence of additional α-helices at the C-termini. Molecular and evolutionary analysis of SFB nucleotide sequences showed a signature of purifying selection in SFB2, while the SFB1 seemed to evolve neutrally. Thus, our results show that the SFB2 allele diversified after P. persica and P. dulcis (almond) divergence, a period which is characterized by an important bottleneck, while SFB1 diversified at a transition time between the bottleneck and population expansion.

scholarly journals How does the S-locus determining self-incompatibility in stone fruits work in self-compatible peach?

2005 ◽  
pp. 93-100
Author(s):  
Attila Hegedűs ◽  
Júlia Halász ◽  
Zoltán Szabó ◽  
József Nyéki ◽  
Andrzej Pedryc
Keyword(s):  
Prunus Persica ◽  
Fruit Trees ◽  
S Locus ◽  
Recognition Mechanism ◽  
Specific Pcr ◽  
Fruit Species ◽  
Self Fertilization ◽  
Self Compatibility ◽  
S Allele ◽  
Available Information

The majority of stone fruit species are self-incompatible, a feature that is determined by a specific recognition mechanism between the S-ribonuclease enzymes residing in the pistils and the F-box proteins expressed in the pollen tubes. Failure in the function of any component of this bipartite system resulted in self-compatibility (SC) in many cultivars of Prunus species. Peach (Prunus persica (L.) Batsch.) is the only species in the Prunoideae subfamily that is traditionally known to be self-compatible, but its molecular background is completely unknown. Isoelectric focusing and S-gene specific PCR revealed that SC is not due to functional inability of pistil ribonucleases. We hypothesize that SC may be a consequence of a kind of pollen-part mutation or the action of one or more currently unknown modifier gene(s). Only two S-alleles were identified in a set of peach genotypes of various origin and phenotypes in contrast to the 17–30 alleles described in self-incompatible fruit trees. Most important commercial cultivars carry the same S-allele and are in a homozygote state. This indicates the common origin of these cultivars and also the consequence of self-fertilization. According to the available information, this is the first report to elucidate the role of S-locus in the fertilization process of peach. 

scholarly journals SLFL Genes Participate in the Ubiquitination and Degradation ofS-RNase in Self-Compatible Chinese Peach

2017 ◽  
Author(s):  
Qiuju Chen ◽  
Dong Meng ◽  
Wei Li ◽  
Zhaoyu Gu ◽  
Hui Yuan ◽  
...  
Keyword(s):  
Prunus Persica ◽  
Hypervariable Region ◽  
Self Incompatibility ◽  
S Locus ◽  
Yeast Two Hybrid ◽  
Peach Genome ◽  
General Inhibitor ◽  
Two Hybrid

AbstractThe gametophytic self-incompatibility (SI) mediated by S-RNase of Rosaceae, Solanaceae and Plantaginaceae, is controlled by two tightly linked genes located at highly polymorphic S-locus: the S-RNase for pistil specificity and the F-box gene (SFB/SLF) for pollen specificity, respectively. The F-box gene of peach (Prunus persica) isShaplotype-specific F-box (SFB). In this study, we selected 37 representative varieties according to the evolution route of peach and identified their S genotypes. We cloned pollen determinant genes mutantPperSFB1m, PperSFB2m, PperSFB4mand normalPperSFB2, and style determinant genesS1-RNase, S2-RNase, S2m-RNaseandS4-RNase.MutantPperSFBswere translated terminated prematurely because of fragment insertion. Yeast two-hybrid showed that mutant PperSFBs and normal PperSFB2 interacted with all S-RNases. NormalPperSFB2was divided into four parts: box, box-V1, V1-V2 and HVa-HVb. Protein interaction analyses showed that the box portion did not interact with S-RNases, both of the box-V1 and V1-V2 had interactions with S-RNases, while the hypervariable region ofPperSFB2HVa-HVb only interacted with S2-RNase. Bioinformatics analysis of peach genome revealed that there were other F-box genes located at S-locus, and of which three F-box genes were specifically expressed in pollen, namelyPperSLFL1, PperSLFL2andPperSLFL3, respectively. Phylogenetic analysis showed that PperSFBs and PperSLFLs were classified into two different clades. Yeast two-hybrid analysis revealed that as with PperSFBs, the three F-box proteins interacted with PperSSK1. Yeast two-hybrid and BiFC showed that PperSLFLs interacted with S-RNases with no allelic specificity. In vitro ubiquitination assay showed that PperSLFLs could tag ubiquitin molecules to PperS-RNases. In all, the above results suggest that threePperSLFLsare the appropriate candidates for the ‘general inhibitor’, which would inactivate the S-RNases in pollen tubes, and the role of three PperSLFL proteins is redundant, as S-RNase repressors involved in the self-incompatibility of peach.

scholarly journals When gametophytic self-incompatibility meets gynodioecy

2008 ◽  
Vol 90 (1) ◽  
pp. 27-35 ◽  
Author(s):  
BODIL K. EHLERS ◽  
MIKKEL H. SCHIERUP
Keyword(s):  
Inbreeding Depression ◽  
Self Incompatibility ◽  
S Locus ◽  
Selfing Rate ◽  
Female Function ◽  
Fecundity Selection ◽  
Incompatibility System ◽  
S Alleles ◽  
Self Compatibility

SummaryThe occurrence of gynodioecy among angiosperms appears to be associated with self-compatibility. We use individual-based simulations to investigate the conditions for breakdown of a gametophytic self-incompatibility system in gynodioecious populations and make a comparison with hermaphroditic populations where the conditions are well known. We study three types of mutations causing self-compatibility. We track the fate of these mutations in both gynodioecious and hermaphroditic populations, where we vary the number of S-alleles, inbreeding depression and selfing rate. We find that the conditions for breakdown are less stringent if the population is gynodioecious and that the breakdown of self-incompatibility tends to promote stability of gynodioecious populations since it results in a higher frequency of females. We also find that fecundity selection has a large effect on the probability of breakdown of self-incompatibility, in particular if caused by a mutation destroying the female function of the S-locus.

scholarly journals On the Origin of Self-Incompatibility Haplotypes: Transition Through Self-Compatible Intermediates

Genetics ◽  
2001 ◽  
Vol 157 (4) ◽  
pp. 1805-1817
Author(s):  
Marcy K Uyenoyama ◽  
Yu Zhang ◽  
Ed Newbigin
Keyword(s):  
Evolutionary Analysis ◽  
Self Incompatibility ◽  
S Locus ◽  
Pollen Type ◽  
Evolutionary Pathway ◽  
Loss Of Self ◽  
Inhibiting Factor ◽  
Self Recognition ◽  
Relative Viability ◽  
Unknown Gene

AbstractSelf-incompatibility (SI) in flowering plants entails the inhibition of fertilization by pollen that express specificities in common with the pistil. In species of the Solanaceae, Rosaceae, and Scrophulariaceae, the inhibiting factor is an extracellular ribonuclease (S-RNase) secreted by stylar tissue. A distinct but as yet unknown gene (provisionally called pollen-S) appears to determine the specific S-RNase from which a pollen tube accepts inhibition. The S-RNase gene and pollen-S segregate with the classically defined S-locus. The origin of a new specificity appears to require, at minimum, mutations in both genes. We explore the conditions under which new specificities may arise from an intermediate state of loss of self-recognition. Our evolutionary analysis of mutations that affect either pistil or pollen specificity indicates that natural selection favors mutations in pollen-S that reduce the set of pistils from which the pollen accepts inhibition and disfavors mutations in the S-RNase gene that cause the nonreciprocal acceptance of pollen specificities. We describe the range of parameters (rate of receipt of self-pollen and relative viability of inbred offspring) that permits the generation of a succession of new specificities. This evolutionary pathway begins with the partial breakdown of SI upon the appearance of a mutation in pollen-S that frees pollen from inhibition by any S-RNase presently in the population and ends with the restoration of SI by a mutation in the S-RNase gene that enables pistils to reject the new pollen type.

scholarly journals S-RNase Alleles Associated With Self-Compatibility in the Tomato Clade: Structure, Origins, and Expression Plasticity

2021 ◽  
Vol 12 ◽  
Author(s):  
Amanda K. Broz ◽  
Christopher M. Miller ◽  
You Soon Baek ◽  
Alejandro Tovar-Méndez ◽  
Pablo Geovanny Acosta-Quezada ◽  
...  
Keyword(s):  
Natural Populations ◽  
Reproductive Barriers ◽  
Self Incompatibility ◽  
S Locus ◽  
Loss Of Function ◽  
Resistance Factors ◽  
Tomato Species ◽  
Genes Encoding ◽  
Self Compatibility ◽  
Barrier Resistance

The self-incompatibility (SI) system in the Solanaceae is comprised of cytotoxic pistil S-RNases which are countered by S-locus F-box (SLF) resistance factors found in pollen. Under this barrier-resistance architecture, mating system transitions from SI to self-compatibility (SC) typically result from loss-of-function mutations in genes encoding pistil SI factors such as S-RNase. However, the nature of these mutations is often not well characterized. Here we use a combination of S-RNase sequence analysis, transcript profiling, protein expression and reproductive phenotyping to better understand different mechanisms that result in loss of S-RNase function. Our analysis focuses on 12 S-RNase alleles identified in SC species and populations across the tomato clade. In six cases, the reason for gene dysfunction due to mutations is evident. The six other alleles potentially encode functional S-RNase proteins but are typically transcriptionally silenced. We identified three S-RNase alleles which are transcriptionally silenced under some conditions but actively expressed in others. In one case, expression of the S-RNase is associated with SI. In another case, S-RNase expression does not lead to SI, but instead confers a reproductive barrier against pollen tubes from other tomato species. In the third case, expression of S-RNase does not affect self, interspecific or inter-population reproductive barriers. Our results indicate that S-RNase expression is more dynamic than previously thought, and that changes in expression can impact different reproductive barriers within or between natural populations.

scholarly journals Characterization of a Common S Haplotype BnS-6 in the Self-Incompatibility of Brassica napus

Plants ◽  
2021 ◽  
Vol 10 (10) ◽  
pp. 2186
Author(s):  
Zhiquan Liu ◽  
Bing Li ◽  
Yong Yang ◽  
Changbin Gao ◽  
Bin Yi ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Genetic Locus ◽  
Recognition System ◽  
Inbred Lines ◽  
The Self ◽  
Self Incompatibility ◽  
S Locus ◽  
S Haplotype ◽  
Self Compatibility

Self-incompatibility (SI) is a pollen-stigma recognition system controlled by a single and highly polymorphic genetic locus known as the S-locus. The S-locus exists in all Brassica napus (B. napus, AACC), but natural B. napus accessions are self-compatible. About 100 and 50 S haplotypes exist in Brassica rapa (AA) and Brassica oleracea (CC), respectively. However, S haplotypes have not been detected in B. napus populations. In this study, we detected the S haplotype distribution in B. napus and ascertained the function of a common S haplotype BnS-6 through genetic transformation. BnS-1/BnS-6 and BnS-7/BnS-6 were the main S haplotypes in 523 B. napus cultivars and inbred lines. The expression of SRK in different S haplotypes was normal (the expression of SCR in the A subgenome affected the SI phenotype) while the expression of BnSCR-6 in the C subgenome had no correlation with the SI phenotype in B. napus. The BnSCR-6 protein in BnSCR-6 overexpressed lines was functional, but the self-compatibility of overexpressed lines did not change. The low expression of BnSCR-6 could be a reason for the inactivation of BnS-6 in the SI response of B. napus. This study lays a foundation for research on the self-compatibility mechanism and the SI-related breeding in B. napus.

scholarly journals Self-Compatibility Inheritance in Tomatillo (Physalis Ixocarpa Brot.)

2007 ◽  
Vol 67 (1) ◽  
pp. 17-24
Author(s):  
Juan Mulato-Brito ◽  
Aureliano Peña-Lomelí ◽  
Jaime Sahagún-Castellanos ◽  
Clemente Villanueva-Verduzco ◽  
José de Jesús López-Reynoso
Keyword(s):  
Single Gene ◽  
Dominant Gene ◽  
Early Research ◽  
Limiting Factors ◽  
Self Incompatibility ◽  
S Locus ◽  
Male Side ◽  
Responsible Gene ◽  
Segregation Ratios ◽  
Self Compatibility

Self-Compatibility Inheritance in Tomatillo (Physalis IxocarpaBrot.)One of the main limiting factors to improve tomatillo is the presence of self-incompatibility which has been reported to be gametophytic. In an early research, a self-compatible plant was found in the Rendidora landrace and this allowed us to investigate the inheritance of self-compatibility gene (s) in tomatillo. The following crosses were performed: self-compatible x self-incompatible, self-compatible x self-compatible and self-incompatible x self-incompatible and their respective reciprocal crosses. Segregation ratios on self-compatibility versus self-incompatibility in their offspring indicate that self-compatibility is not inherited via cytoplasm, so the responsible gene is located in chromosomes. The inheritance of self-compatibility is due to a single dominant gene (Sc) which is a mutation at the S locus. Self-compatible individuals are strictly heterozygous (Sc,4) and finally, the self-compatibility allele (Sc), in the male side (Sc,4), seems to be non functional when self-pollinating the Sc,4stigma. A single gene controlling stem pubescence was also found.

Sequence and Structural Diversity of the S Locus Genes From Different Lines With the Same Self-Recognition Specificities in Brassica oleracea

Genetics ◽  
2000 ◽  
Vol 154 (1) ◽  
pp. 413-420 ◽  
Author(s):  
Makoto Kusaba ◽  
Masanori Matsushita ◽  
Keiichi Okazaki ◽  
Yoko Satta ◽  
Takeshi Nishio
Keyword(s):  
Structural Diversity ◽  
Receptor Protein ◽  
Self Incompatibility ◽  
S Locus ◽  
High Similarity ◽  
Putative Receptor ◽  
Recognition Specificity ◽  
Polymorphic Genes ◽  
Self Recognition ◽  
Self Fertilization

Abstract Self-incompatibility (SI) is a mechanism for preventing self-fertilization in flowering plants. In Brassica, it is controlled by a single multi-allelic locus, S, and it is believed that two highly polymorphic genes in the S locus, SLG and SRK, play central roles in self-recognition in stigmas. SRK is a putative receptor protein kinase, whose extracellular domain exhibits high similarity to SLG. We analyzed two pairs of lines showing cross-incompatibility (S2 and S2-b; S13 and S13-b). In S2 and S2-b, SRKs were more highly conserved than SLGs. This was also the case with S13 and S13-b. This suggests that the SRKs of different lines must be conserved for the lines to have the same self-recognition specificity. In particular, SLG2-b showed only 88.5% identity to SLG2, which is comparable to that between the SLGs of different S haplotypes, while SRK2-b showed 97.3% identity to SRK2 in the S domain. These findings suggest that the SLGs in these S haplotypes are not important for self-recognition in SI.

scholarly journals Genome-wide identification and evolutionary analysis of RLKs involved in the response to aluminium stress in peanut

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Xin Wang ◽  
Ming-Hua Wu ◽  
Dong Xiao ◽  
Ruo-Lan Huang ◽  
Jie Zhan ◽  
...  
Keyword(s):  
Stress Responses ◽  
Segmental Duplication ◽  
Tandem Duplication ◽  
Expression Patterns ◽  
Purifying Selection ◽  
Segmental Duplications ◽  
Evolutionary Analysis ◽  
Gene Pairs ◽  
Al Stress ◽  
Peanut Genome

Abstract Background As an important cash crop, the yield of peanut is influenced by soil acidification and pathogen infection. Receptor-like protein kinases play important roles in plant growth, development and stress responses. However, little is known about the number, location, structure, molecular phylogeny, and expression of RLKs in peanut, and no comprehensive analysis of RLKs in the Al stress response in peanuts have been reported. Results A total of 1311 AhRLKs were identified from the peanut genome. The AhLRR-RLKs and AhLecRLKs were further divided into 24 and 35 subfamilies, respectively. The AhRLKs were randomly distributed across all 20 chromosomes in the peanut. Among these AhRLKs, 9.53% and 61.78% originated from tandem duplications and segmental duplications, respectively. The ka/ks ratios of 96.97% (96/99) of tandem duplication gene pairs and 98.78% (646/654) of segmental duplication gene pairs were less than 1. Among the tested tandem duplication clusters, there were 28 gene conversion events. Moreover, all total of 90 Al-responsive AhRLKs were identified by mining transcriptome data, and they were divided into 7 groups. Most of the Al-responsive AhRLKs that clustered together had similar motifs and evolutionarily conserved structures. The gene expression patterns of these genes in different tissues were further analysed, and tissue-specifically expressed genes, including 14 root-specific Al-responsive AhRLKs were found. In addition, all 90 Al-responsive AhRLKs which were distributed unevenly in the subfamilies of AhRLKs, showed different expression patterns between the two peanut varieties (Al-sensitive and Al-tolerant) under Al stress. Conclusions In this study, we analysed the RLK gene family in the peanut genome. Segmental duplication events were the main driving force for AhRLK evolution, and most AhRLKs subject to purifying selection. A total of 90 genes were identified as Al-responsive AhRLKs, and the classification, conserved motifs, structures, tissue expression patterns and predicted functions of Al-responsive AhRLKs were further analysed and discussed, revealing their putative roles. This study provides a better understanding of the structures and functions of AhRLKs and Al-responsive AhRLKs.

scholarly journals A nonS-locus F-box gene breaks self-incompatibility in diploid potatoes

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Ling Ma ◽  
Chunzhi Zhang ◽  
Bo Zhang ◽  
Fei Tang ◽  
Futing Li ◽  
...  
Keyword(s):  
Potato Breeding ◽  
Inbred Lines ◽  
Hybrid Breeding ◽  
Self Incompatibility ◽  
Diploid Hybrid ◽  
Food Crop ◽  
Global Food Security ◽  
The Third ◽  
Self Compatibility ◽  
Global Food

AbstractPotato is the third most important staple food crop. To address challenges associated with global food security, a hybrid potato breeding system, aimed at converting potato from a tuber-propagated tetraploid crop into a seed-propagated diploid crop through crossing inbred lines, is under development. However, given that most diploid potatoes are self-incompatible, this represents a major obstacle which needs to be addressed in order to develop inbred lines. Here, we report on a self-compatible diploid potato, RH89-039-16 (RH), which can efficiently induce a mating transition from self-incompatibility to self-compatibility, when crossed to self-incompatible lines. We identify the S-locusinhibitor (Sli) gene in RH, capable of interacting with multiple allelic variants of the pistil-specific S-ribonucleases (S-RNases). Further, Sli gene functions like a general S-RNase inhibitor, to impart SC to RH and other self-incompatible potatoes. Discovery of Sli now offers a path forward for the diploid hybrid breeding program.

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