scholarly journals Use of experimental isotope-exchange fluxes in reversible enzyme and membrane transport models, assessed by simultaneous computer simulation of unidirectional and net chemical rates

1992 ◽  
Vol 286 (1) ◽  
pp. 295-303 ◽  
Author(s):  
I W Plesner
Keyword(s):  
Steady State ◽  
Exchange Rates ◽  
Membrane Transport ◽  
Isotope Exchange ◽  
Transport Model ◽  
Total Concentration ◽  
Rate Equations ◽  
Tracer Transport ◽  
Transport Models ◽  
Experimental Conditions

Steady-state rate equations for unidirectional (isotope-exchange) rates can become so complex, even for rather simple (reversible) enzyme or membrane transport models, that they are useless for detailed data analysis. In this paper a procedure is described for simultaneous simulation of net (chemical) and isotope-exchange rates. The method employs an expanded version of the basic model to monitor explicitly the fate of the label in an experiment. The procedure is quite general, and can be used for steady-state as well as transient kinetic situations, or it can be used in conjunction with existing interactive computer programs for steady-state model analysis. Three numerical examples are presented. First, it is shown, using the conventional (Post-Albers) model for Na+/K(+)-ATPase, that the change in concentration of a labelled intermediate after a change in experimental conditions does not in general reflect the change in the total concentration of that intermediate, and thus labelled intermediate concentrations may be misleading. Second, using a standard co-transport model and a prototype active-transport model (equivalent to a ligand-ATPase), it is shown that the ratio of tracer transport fluxes at steady state yields transport stoichiometries which depend on the experimental conditions, are different from the net apparent stoichiometries, and whose changes with conditions are also different from that of the net stoichiometries. It follows that conclusions drawn on the basis of experimentally determined tracer fluxes should be viewed with some caution. Specifically, a measured influx stoichiometry ligand/ATP (in the ATPase case) of higher than 1:1 does not necessarily imply the existence of more than one site for either ligand on the enzyme.

scholarly journals The importance of transport model uncertainties for the estimation of CO<sub>2</sub> sources and sinks using satellite measurements

2010 ◽  
Vol 10 (20) ◽  
pp. 9981-9992 ◽  
Author(s):  
S. Houweling ◽  
I. Aben ◽  
F.-M. Breon ◽  
F. Chevallier ◽  
N. Deutscher ◽  
...  
Keyword(s):  
Transport Model ◽  
Atmospheric Transport ◽  
A Priori ◽  
Model Errors ◽  
Tracer Transport ◽  
Satellite Measurements ◽  
Transport Models ◽  
Sources And Sinks ◽  
The Impact ◽  
Ppm Level

Abstract. This study presents a synthetic model intercomparison to investigate the importance of transport model errors for estimating the sources and sinks of CO2 using satellite measurements. The experiments were designed for testing the potential performance of the proposed CO2 lidar A-SCOPE, but also apply to other space borne missions that monitor total column CO2. The participating transport models IFS, LMDZ, TM3, and TM5 were run in forward and inverse mode using common a priori CO2 fluxes and initial concentrations. Forward simulations of column averaged CO2 (xCO2) mixing ratios vary between the models by σ=0.5 ppm over the continents and σ=0.27 ppm over the oceans. Despite the fact that the models agree on average on the sub-ppm level, these modest differences nevertheless lead to significant discrepancies in the inverted fluxes of 0.1 PgC/yr per 106 km2 over land and 0.03 PgC/yr per 106 km2 over the ocean. These transport model induced flux uncertainties exceed the target requirement that was formulated for the A-SCOPE mission of 0.02 PgC/yr per 106 km2, and could also limit the overall performance of other CO2 missions such as GOSAT. A variable, but overall encouraging agreement is found in comparison with FTS measurements at Park Falls, Darwin, Spitsbergen, and Bremen, although systematic differences are found exceeding the 0.5 ppm level. Because of this, our estimate of the impact of transport model uncerainty is likely to be conservative. It is concluded that to make use of the remote sensing technique for quantifying the sources and sinks of CO2 not only requires highly accurate satellite instruments, but also puts stringent requirements on the performance of atmospheric transport models. Improving the accuracy of these models should receive high priority, which calls for a closer collaboration between experts in atmospheric dynamics and tracer transport.

A degradation approach to accelerate simulations to steady-state in a 3-D tracer transport model of the global ocean

1998 ◽  
Vol 14 (2) ◽  
pp. 101-116 ◽  
Author(s):  
O. Aumont ◽  
J. C. Orr ◽  
D. Jamous ◽  
P. Monfray ◽  
O. Marti ◽  
...  
Keyword(s):  
Steady State ◽  
Transport Model ◽  
Global Ocean ◽  
Tracer Transport

scholarly journals The steady-state visual evoked potential (SSVEP) reflects the activation of cortical object representations: evidence from semantic stimulus repetition

2020 ◽  
Author(s):  
Elise L. Radtke ◽  
Ulla Martens ◽  
Thomas Gruber
Keyword(s):  
Steady State ◽  
Object Representation ◽  
Sensory Information ◽  
Familiar Object ◽  
Object Representations ◽  
Stimulus Repetition ◽  
Experimental Conditions ◽  
Repetition Suppression ◽  
Task Irrelevant ◽  
Visual Evoked

AbstractWe applied high-density EEG to examine steady-state visual evoked potentials (SSVEPs) during a perceptual/semantic stimulus repetition design. SSVEPs are evoked oscillatory cortical responses at the same frequency as visual stimuli flickered at this frequency. In repetition designs, stimuli are presented twice with the repetition being task irrelevant. The cortical processing of the second stimulus is commonly characterized by decreased neuronal activity (repetition suppression). The behavioral consequences of stimulus repetition were examined in a companion reaction time pre-study using the same experimental design as the EEG study. During the first presentation of a stimulus, we confronted participants with drawings of familiar object images or object words, respectively. The second stimulus was either a repetition of the same object image (perceptual repetition; PR) or an image depicting the word presented during the first presentation (semantic repetition; SR)—all flickered at 15 Hz to elicit SSVEPs. The behavioral study revealed priming effects in both experimental conditions (PR and SR). In the EEG, PR was associated with repetition suppression of SSVEP amplitudes at left occipital and repetition enhancement at left temporal electrodes. In contrast, SR was associated with SSVEP suppression at left occipital and central electrodes originating in bilateral postcentral and occipital gyri, right middle frontal and right temporal gyrus. The conclusion of the presented study is twofold. First, SSVEP amplitudes do not only index perceptual aspects of incoming sensory information but also semantic aspects of cortical object representation. Second, our electrophysiological findings can be interpreted as neuronal underpinnings of perceptual and semantic priming.

scholarly journals On interpreting studies of tracer transport by deep cumulus convection and its effects on atmospheric chemistry

2008 ◽  
Vol 8 (20) ◽  
pp. 6037-6050 ◽  
Author(s):  
M. G. Lawrence ◽  
M. Salzmann
Keyword(s):  
Atmospheric Chemistry ◽  
Large Scale ◽  
Deep Convection ◽  
Convective Transport ◽  
Advective Transport ◽  
Tracer Transport ◽  
Transport Models ◽  
Mass Fluxes ◽  
Split Treatment ◽  
The Mean

Abstract. Global chemistry-transport models (CTMs) and chemistry-GCMs (CGCMs) generally simulate vertical tracer transport by deep convection separately from the advective transport by the mean winds, even though a component of the mean transport, for instance in the Hadley and Walker cells, occurs in deep convective updrafts. This split treatment of vertical transport has various implications for CTM simulations. In particular, it has led to a misinterpretation of several sensitivity simulations in previous studies in which the parameterized convective transport of one or more tracers is neglected. We describe this issue in terms of simulated fluxes and fractions of these fluxes representing various physical and non-physical processes. We then show that there is a significant overlap between the convective and large-scale mean advective vertical air mass fluxes in the CTM MATCH, and discuss the implications which this has for interpreting previous and future sensitivity simulations, as well as briefly noting other related implications such as numerical diffusion.

Predictive membrane transport model for nanofiltration processes in water treatment

AIChE Journal ◽  
2001 ◽  
Vol 47 (6) ◽  
pp. 1346-1362 ◽  
Author(s):  
Shih-Chieh Tu ◽  
Varadarajan Ravindran ◽  
Walter Den ◽  
Massoud Pirbazari
Keyword(s):  
Water Treatment ◽  
Membrane Transport ◽  
Transport Model

scholarly journals Participation of plasma membrane proteins in the formation of tight junction by cultured epithelial cells

1983 ◽  
Vol 96 (3) ◽  
pp. 693-702 ◽  
Author(s):  
EB Griepp ◽  
WJ Dolan ◽  
ES Robbins ◽  
DD Sabatini
Keyword(s):  
Protein Synthesis ◽  
Steady State ◽  
Tight Junction ◽  
Messenger Rna ◽  
Freeze Fracture ◽  
Epithelial Cell Line ◽  
Experimental Conditions ◽  
Tight Junction Formation ◽  
Junction Formation ◽  
Spinner Culture

Measurements of the transepithelial electrical resistance correlated with freeze-fracture observations have been used to study the process of tight junction formation under various experimental conditions in monolayers of the canine kidney epithelial cell line MDCK. Cells derived from previously confluent cultures and plated immediately after trypsin- EDTA dissociation develop a resistance that reaches its maximum value of several hundred ohms-cm(2) after approximately 24 h and falls to a steady-state value of 80-150 ohms- cm(2) by 48 h. The rise in resistance and the development of tight junctions can be completely and reversibly prevented by the addition of 10 μg/ml cycloheximide at the time of plating, but not when this inhibitor is added more than 10 h after planting. Thus tight junction formation consists of separable synthetic and assembly phases. These two phases can also be dissociated and the requirement for protein synthesis after plating eliminated if, following trypsinization, the cells are maintained in spinner culture for 24 h before plating. The requirement for protein synthesis is restored, however, if cells maintained in spinner culture are treated with trypsin before plating. Actinomycin D prevents development of resistance only in monolayers formed from cells derived from sparse rather than confluent cultures, but new mRNA synthesis is not required if cells obtained from sparse cultures are maintained for 24 h in spinner culture before plating. Once a steady-state resistance has been reached, its maintenance does not require either mRNA or protein synthesis; in fact, inhibition of protein synthesis causes a rise in the resistance over a 30-h period. Following treatments that disrupt the junctions in steady- state monolayers recovery of resistance also does not require protein synthesis. These observations suggest that proteins are involved in tight junction formation. Such proteins, which do not turn over rapidly under steady-state conditions, are destroyed by trypsinization and can be resynthesized in the absence of stable cell-cell or cell-substratum contact. Messenger RNA coding for proteins involved in tight junction formation is stable except when cells are sparsely plated, and can also be synthesized without intercellular contacts or cell-substratum attachment.

scholarly journals Measuring and modelling the isotopic composition of soil respiration: insights from a grassland tracer experiment

2011 ◽  
Vol 8 (5) ◽  
pp. 1333-1350 ◽  
Author(s):  
U. Gamnitzer ◽  
A. B. Moyes ◽  
D. R. Bowling ◽  
H. Schnyder
Keyword(s):  
Steady State ◽  
Isotopic Composition ◽  
Transport Model ◽  
Tracer Experiment ◽  
Atmospheric Co2 ◽  
Soil Co2 ◽  
Soil Air ◽  
Co2 Transport ◽  
Atmosphere System

Abstract. The carbon isotopic composition (δ13C) of CO2 efflux (δ13Cefflux) from soil is generally interpreted to represent the actual isotopic composition of the respiratory source (δ13CRs). However, soils contain a large CO2 pool in air-filled pores. This pool receives CO2 from belowground respiration and exchanges CO2 with the atmosphere (via diffusion and advection) and the soil liquid phase (via dissolution). Natural or artificial modification of δ13C of atmospheric CO2 (δ13Catm) or δ13CRs causes isotopic disequilibria in the soil-atmosphere system. Such disequilibria generate divergence of δ13Cefflux from δ13CRs (termed "disequilibrium effect"). Here, we use a soil CO2 transport model and data from a 13CO2/12CO2 tracer experiment to quantify the disequilibrium between δ13Cefflux and δ13CRs in ecosystem respiration. The model accounted for diffusion of CO2 in soil air, advection of soil air, dissolution of CO2 in soil water, and belowground and aboveground respiration of both 12CO2 and 13CO2 isotopologues. The tracer data were obtained in a grassland ecosystem exposed to a δ13Catm of −46.9 ‰ during daytime for 2 weeks. Nighttime δ13Cefflux from the ecosystem was estimated with three independent methods: a laboratory-based cuvette system, in-situ steady-state open chambers, and in-situ closed chambers. Earlier work has shown that the δ13Cefflux measurements of the laboratory-based and steady-state systems were consistent, and likely reflected δ13CRs. Conversely, the δ13Cefflux measured using the closed chamber technique differed from these by −11.2 ‰. Most of this disequilibrium effect (9.5 ‰) was predicted by the CO2 transport model. Isotopic disequilibria in the soil-chamber system were introduced by changing δ13Catm in the chamber headspace at the onset of the measurements. When dissolution was excluded, the simulated disequilibrium effect was only 3.6 ‰. Dissolution delayed the isotopic equilibration between soil CO2 and the atmosphere, as the storage capacity for labelled CO2 in water-filled soil pores was 18 times that of soil air. These mechanisms are potentially relevant for many studies of δ13CRs in soils and ecosystems, including FACE experiments and chamber studies in natural conditions. Isotopic disequilibria in the soil-atmosphere system may result from temporal variation in δ13CRs or diurnal changes in the mole fraction and δ13C of atmospheric CO2. Dissolution effects are most important under alkaline conditions.

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