On ecology of post-fire soil fungi: assessing impact of disturbance using species-abundance models as measure of community organization

Author(s):  
A. M. Persiani
2009 ◽  
Vol 69 (4) ◽  
pp. 1015-1025 ◽  
Author(s):  
WS. Smith ◽  
M. Petrere Jr. ◽  
W. Barrella

A fish assemblage study was accomplished in different habitats of the Sorocaba River Basin. Fish were caught with gillnets, were weighed (weight total - g) and measured (standard length - mm). Several abiotic variables of selected sampling sites were measured in order to characterise their habitats in order to attempt establishing correlations with fish community traits. Fish numbers per species were adjusted to the lognormal and logseries species/abundance models The fish community totaled 38 species, distributed in 28 genera, 14 families and 4 orders. Diversity was calculated both in number and in weight and both presented higher values in better preserved sites. We did not detect any statistical differences between dry and rainy seasons. We also concluded that the abundance distribution was not influenced by abiotic variables.


Oikos ◽  
2006 ◽  
Vol 114 (1) ◽  
pp. 27-36 ◽  
Author(s):  
Frank Johansson ◽  
Göran Englund ◽  
Tomas Brodin ◽  
Hans Gardfjell

Ecology ◽  
1959 ◽  
Vol 40 (3) ◽  
pp. 404-416 ◽  
Author(s):  
Nelson G. Hairston

2009 ◽  
Vol 6 (3) ◽  
pp. 431-438 ◽  
Author(s):  
V. Raybaud ◽  
A. Tunin-Ley ◽  
M. E. Ritchie ◽  
J. R. Dolan

Abstract. Planktonic populations were sampled over a 4 week period in the NW Mediterranean, at a site subject to little vertical advection during the Dynaproc 2 cruise in 2004. The characteristics of the phytoplankton, the tintinnid community and the zooplankton have recently been described in detail. Based on these studies, we compared the characteristics of 3 well-circumscribed assemblages of different trophic levels: Ceratium of the phytoplankton, herbivorous tintinnids of the microzooplankton, and large (>500 μm) omnivorous and carnivorous copepods of the metazoan zooplankton. In all three groups, diversity as H' or species richness, was less variable than concentration of organisms. Plotting time against species accumulation, the curves approached plateau values for Ceratium spp, tintinnids and large copepods but only a small number of species were consistently present (core species) and these accounted for most of the populations. For Ceratium core species numbered 10, for tintinnids 11 species, and for large copepods, core species numbered 4 during the day and 16 at night. Ceratium, tintinnids and large copepods showed some similar patterns of community structure in terms of species abundance distributions. Ceratium species were distributed in a log-normal pattern. Tintinnid species showed a log-series distribution. Large copepod assemblages were highly dominated with night samples showing much higher abundances and greater species richness than day samples. However, species abundance distributions were similar between day and night and were mostly log-normal. The paradox of the plankton, describing phytoplankton communities as super-saturated with species, extends to the microzooplankton and zooplankton.


2017 ◽  
Author(s):  
Chunrong Mi ◽  
Falk Huettmann ◽  
Rui Sun ◽  
Yumin Guo

Species distribution models (SDMs) have become important and essential tools in conservation and management. However, SDMs built with count data, commonly referred to as species abundance models (SAMs), are still less used so far. SDMs are increasingly used now in conservation decisions, whereas SAMs are still not widely employed. Species occurrence and abundance do not frequently display similar patterns, often they are not even well correlated. This leads to an insufficient or misleading conservation. How to combine information from SDMs and SAMs all together for unified conservation remains a challenge. In this study, we put forward for the first time a priority protection index (PI). The PI combines the prediction results of occurrence and abundance models. We used the best-available presence and count records for an endangered farmland species, Great Bustard (Otis tarda dybowskii) in Bohai Bay, China, as a case study. We then applied the advanced Random Forest algorithm (Salford Systems Ltd. implementation), a powerful machine learning method, with eleven predictor variables to forecast the spatial occurrence as well as the abundance distribution. The results show that the occurrence model had a decent performance (ROC: 0.77) and the abundance model had a RMSE 26.54. It is of note that environmental variables influenced bustard occurrence and abundance differently. We found that occurrence and abundance models display different spatial distribution patterns. Still, combining occurrence and abundance indices to produce a priority protection index (PI) used for conservation could guide the protection of the areas with high occurrence and high abundance (e.g. in Strategic Conservation Planning). Due to the widespread use of SDMs and the rel. easy subsequent employment of SAMs these findings have a wide relevance and applicability, worldwide. We promote and strongly encourage to further test, apply and update the priority protection index (PI) elsewhere in order to explore the generality of these findings and methods readily available now for researchers.


2020 ◽  
Author(s):  
Marco Basile ◽  
Thomas Asbeck ◽  
João M. Cordeiro Pereira ◽  
Grzegorz Mikusiński ◽  
Ilse Storch

AbstractSpecies associations can have profound effects on the realized habitat niche of species, indicating that habitat structure alone cannot fully explain observed abundances. To account for this aspect of community organization in niche modelling, we developed multi-species abundance models, incorporating the local effect of potentially associated species, alongside with environmental ones, targeting mainly forest management intensity. We coupled it with a landscape-scale analysis to further examine the role of management intensity in modifying the habitat niche in connection with the landscape context. Using empirical data from the Black Forest in southern Germany, we focused on the forest bird assemblage and in particular on the cavity nester and canopy forager guilds. We included in the analysis species that co-occur and for which evidences suggest association is likely. Our findings show that the local effect of species associations can moderate the effects of management intensity. We also found that species express a larger habitat niche breadth in intensively managed forests, depending on the landscape context. Species associations may facilitate the utilization of a broader range of environmental conditions under intensive forest management, which benefits some species over others. Such network of associations may be a relevant factor in the effectiveness of conservation-oriented forest management.


Ecology ◽  
2009 ◽  
Vol 90 (11) ◽  
pp. 3138-3149 ◽  
Author(s):  
Sean R. Connolly ◽  
Maria Dornelas ◽  
David R. Bellwood ◽  
Terence P. Hughes

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