SATCHMO: sequence alignment and tree construction using hidden Markov models

Bioinformatics ◽

10.1093/bioinformatics/btg158 ◽

2003 ◽

Vol 19 (11) ◽

pp. 1404-1411 ◽

Author(s):

R. C. Edgar ◽

K. Sjolander

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Tree Construction

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SIMULTANEOUS SEQUENCE ALIGNMENT AND TREE CONSTRUCTION USING HIDDEN MARKOV MODELS

Biocomputing 2003 ◽

10.1142/9789812776303_0018 ◽

2002 ◽

Author(s):

ROBERT C. EDGAR ◽

KIMMEN SJÖLANDER

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Tree Construction

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Faculty Opinions recommendation of SATCHMO: sequence alignment and tree construction using hidden Markov models.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1014561.193961 ◽

2003 ◽

Author(s):

Andras Fiser

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Tree Construction

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Multiple Sequence Alignment with Pro le Hidden Markov Models

10.31979/etd.vub9-j9hc ◽

2016 ◽

Author(s):

Shubhangi Rakhonde

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Multiple Sequence

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Global pairwise sequence alignment using Hidden Markov Models applied through different scoring schemes

Proceedings of 2012 IEEE-EMBS International Conference on Biomedical and Health Informatics ◽

10.1109/bhi.2012.6211743 ◽

2012 ◽

Author(s):

M. Duran ◽

I. O. Bucak

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Pairwise Sequence Alignment ◽

Scoring Schemes

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MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information

Nucleic Acids Research ◽

10.1093/nar/gkl514 ◽

2006 ◽

Vol 34 (16) ◽

pp. 4364-4374 ◽

Author(s):

Jimin Pei ◽

Nick V. Grishin

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Markov Models ◽

Structural Information ◽

Hidden Markov ◽

Multiple Sequence

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Statistical Significance of Probabilistic Sequence Alignment and Related Local Hidden Markov Models

Journal of Computational Biology ◽

10.1089/10665270152530845 ◽

2001 ◽

Vol 8 (3) ◽

pp. 249-282 ◽

Author(s):

Yi-Kuo Yu ◽

Terence Hwa

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Statistical Significance

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Multiple Sequence Alignment with Hidden Markov Models Learned by Random Drift Particle Swarm Optimization

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2013.148 ◽

2014 ◽

Vol 11 (1) ◽

pp. 243-257 ◽

Author(s):

Jun Sun ◽

Vasile Palade ◽

Xiaojun Wu ◽

Wei Fang

Keyword(s):

Particle Swarm Optimization ◽

Hidden Markov Models ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Random Drift ◽

Multiple Sequence ◽

Swarm Optimization ◽

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MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities

Bioinformatics ◽

10.1093/bioinformatics/btq338 ◽

2010 ◽

Vol 26 (16) ◽

pp. 1958-1964 ◽

Author(s):

Y. Liu ◽

B. Schmidt ◽

D. L. Maskell

Keyword(s):

Partition Function ◽

Hidden Markov Models ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Posterior Probabilities ◽

Multiple Sequence

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Design and implementation of bi-level artificial bee colony algorithm to train hidden Markov models for performing multiple sequence alignment of proteins

International Journal of Swarm Intelligence ◽

10.1504/ijsi.2021.10037384 ◽

2021 ◽

Vol 6 (1) ◽

pp. 48

Author(s):

Soniya Lalwani

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Artificial Bee Colony Algorithm ◽

Artificial Bee Colony ◽

Markov Models ◽

Hidden Markov ◽

Multiple Sequence ◽

Design And Implementation ◽

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Faculty Opinions recommendation of Statistical significance of probabilistic sequence alignment and related local hidden Markov models.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1003058.29555 ◽

2001 ◽

Author(s):

Stephen Altschul

Keyword(s):

Hidden Markov Models ◽

Sequence Alignment ◽

Markov Models ◽

Hidden Markov ◽

Statistical Significance

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