scholarly journals xMWAS: a data-driven integration and differential network analysis tool

2017 ◽  
Vol 34 (4) ◽  
pp. 701-702 ◽  
Author(s):  
Karan Uppal ◽  
Chunyu Ma ◽  
Young-Mi Go ◽  
Dean P Jones
Keyword(s):  
Network Analysis ◽  
Data Driven ◽  
Analysis Tool ◽  
Differential Network Analysis ◽  
Differential Network

scholarly journals xMWAS: an R package for data-driven integration and differential network analysis

2017 ◽  
Author(s):  
Karan Uppal ◽  
Young-Mi Go ◽  
Dean P. Jones
Keyword(s):  
Network Analysis ◽  
Data Integration ◽  
R Package ◽  
Data Driven ◽  
Central Component ◽  
Differential Network Analysis ◽  
Differential Network ◽  
Meaningful Relationships ◽  
Integrative Network ◽  
Integrative Omics

AbstractSummaryIntegrative omics is a central component of most systems biology studies. Computational methods are required for extracting meaningful relationships across different omics layers. Various tools have been developed to facilitate integration of paired heterogenous omics data; however most existing tools allow integration of only two omics datasets. Further-more, existing data integration tools do not incorporate additional steps of identifying sub-networks or communities of highly connected entities and evaluating the topology of the integrative network under different conditions. Here we present xMWAS, an R package for data integration, network visualization, clustering, differential network analysis of data from biochemical and phenotypic assays, and two or more omics platforms.Availabilityhttps://sourceforge.net/projects/xmwas/[email protected]

scholarly journals Multi-level differential network analysis of COPD exacerbations

2017 ◽  
Vol 50 (3) ◽  
pp. 1700075 ◽  
Author(s):  
Guillaume Noell ◽  
Borja G. Cosío ◽  
Rosa Faner ◽  
Eduard Monsó ◽  
German Peces-Barba ◽  
...  
Keyword(s):  
Network Analysis ◽  
Differential Network Analysis ◽  
Copd Exacerbations ◽  
Differential Network ◽  
Multi Level

scholarly journals Prediction of disease–gene–drug relationships following a differential network analysis

2016 ◽  
Vol 7 (1) ◽  
pp. e2040-e2040 ◽  
Author(s):  
S Zickenrott ◽  
V E Angarica ◽  
B B Upadhyaya ◽  
A del Sol
Keyword(s):  
Network Analysis ◽  
Disease Gene ◽  
Differential Network Analysis ◽  
Differential Network

scholarly journals An Animal Model with a Cardiomyocyte-Specific Deletion of Estrogen Receptor Alpha: Functional, Metabolic, and Differential Network Analysis

PLoS ONE ◽  
2014 ◽  
Vol 9 (7) ◽  
pp. e101900 ◽  
Author(s):  
Sriram Devanathan ◽  
Timothy Whitehead ◽  
George G. Schweitzer ◽  
Nicole Fettig ◽  
Attila Kovacs ◽  
...  
Keyword(s):  
Animal Model ◽  
Estrogen Receptor ◽  
Network Analysis ◽  
Estrogen Receptor Alpha ◽  
Receptor Alpha ◽  
Differential Network Analysis ◽  
Differential Network ◽  
Specific Deletion
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