scholarly journals A Laurasian origin for a pantropical bird radiation is supported by genomic and fossil data (Aves: Coraciiformes)

2019 ◽  
Vol 286 (1910) ◽  
pp. 20190122 ◽  
Author(s):  
Jenna M. McCullough ◽  
Robert G. Moyle ◽  
Brian T. Smith ◽  
Michael J. Andersen

The evolution of pantropically distributed clades has puzzled palaeo- and neontologists for decades regarding the different hypotheses about where they originated. In this study, we explored how a pantropical distribution arose in a diverse clade with a rich fossil history: the avian order Coraciiformes. This group has played a central role in the debate of the biogeographical history of Neoaves. However, the order lacked a coherent species tree to inform study of its evolutionary dynamics. Here, we present the first complete species tree of Coraciiformes, produced with 4858 ultraconserved elements, which supports two clades: (1) Old World-restricted bee-eaters, rollers and ground-rollers; and (2) New World todies and motmots, and cosmopolitan kingfishers. Our results indicated two pulses of diversification: (1) major lineages of Coraciiformes arose in Laurasia approximately 57 Ma, followed by independent dispersals into equatorial regions, possibly due to tracking tropical habitat into the lower latitudes—the Coracii (Coraciidae + Brachypteraciidae) into the Afrotropics, bee-eaters throughout the Old World tropics, and kingfishers into the Australasian tropics; and (2) diversification of genera in the tropics during the Miocene and Pliocene. Our study supports the important role of Laurasia as the geographical origin of a major pantropical lineage and provides a new framework for comparative analyses in this charismatic bird radiation.

2017 ◽  
Vol 4 (4) ◽  
pp. 170105 ◽  
Author(s):  
Karen L. Bell ◽  
Haripriya Rangan ◽  
Manuel M. Fernandes ◽  
Christian A. Kull ◽  
Daniel J. Murphy

Acacia s.l. farnesiana , which originates from Mesoamerica, is the most widely distributed Acacia s.l. species across the tropics. It is assumed that the plant was transferred across the Atlantic to southern Europe by Spanish explorers, and then spread across the Old World tropics through a combination of chance long-distance and human-mediated dispersal. Our study uses genetic analysis and information from historical sources to test the relative roles of chance and human-mediated dispersal in its distribution. The results confirm the Mesoamerican origins of the plant and show three patterns of human-mediated dispersal. Samples from Spain showed greater genetic diversity than those from other Old World tropics, suggesting more instances of transatlantic introductions from the Americas to that country than to other parts of Africa and Asia. Individuals from the Philippines matched a population from South Central Mexico and were likely to have been direct, trans-Pacific introductions. Australian samples were genetically unique, indicating that the arrival of the species in the continent was independent of these European colonial activities. This suggests the possibility of pre-European human-mediated dispersal across the Pacific Ocean. These significant findings raise new questions for biogeographic studies that assume chance or transoceanic dispersal for disjunct plant distributions.


Author(s):  
Rodney Harrison

The focus of this article is stone tools. The history of stone tool research is linked integrally to the history of archaeology and the study of the human past, and many of the early developments in archaeology were connected with the study of stone artefacts. The identification of stone tools as objects of prehistoric human manufacture was central to the development of nineteenth-century models of prehistoric change, and especially the Three Age system for Old World prehistory. This article draws on concepts derived from interdisciplinary material culture studies to consider the role of the artefact after being discarded. It suggests that it is impossible to understand the meaning or efficacy of stone tools without understanding their ‘afterlives’ following abandonment. This article aims to complement contemporary metrical studies of the identification of stone tools and the description of their production. A brief history of the stone tools is explained and this concludes the article.


Author(s):  
Dieter Thomas Tietze ◽  
Michael Wink ◽  
Martin Päckert

The Apodini swifts in the Old World serve as an example for a recent radiation on an intercontinental scale on the one hand. On the other hand they provide a model for the interplay of trait and distributional range evolution with speciation, extinction and trait transition rates on a low taxonomic level (23 extant taxa). Swifts are well adapted to a life mostly in the air and to long-distance movements. Their overall colouration is dull, but lighter feather patches of chin and rump stand out as visual signals. Only few Apodini taxa breed outside the tropics; they are the only species in the study group that migrate long distances to wintering grounds in the tropics and subtropics. We reconstructed a dated molecular phylogeny including all species, numerous outgroups and fossil constraints. Several methods were used for historical biogeography and two models for the study of trait evolution. We finally correlated trait expression with geographic status. The differentiation of the Apodini took place in less than 9 Ma. Their ancestral range most likely comprised large parts of the Old-World tropics, although the majority of extant taxa breed in the Afrotropic and the closest relatives occur in the Indomalayan. The expression of all three investigated traits increased speciation rates and the traits were more likely lost than gained. Chin patches are found in almost all species, so that no association with phylogeny or range could be found. Rump patches showed a phylogenetic signal and were correlated with Indomalayan distribution. Apodini swifts performed long-distance migration whenever they expanded their range to temperate latitudes during warm periods, repeatedly in the Pleistocene.


2022 ◽  
Author(s):  
Rute Marcelino ◽  
Ifeanyi J Ezeonwumelu ◽  
Andre Janeiro ◽  
Paula Mimoso ◽  
Sonia Matos ◽  
...  

In Portugal, the genetic diversity, origin of HBV, and the Portuguese role in the dissemination of HBV worldwide were never investigated. In this work, we studied the epidemic history and transmission dynamics of HBV genotypes that are endemic in Portugal. HBV pol gene was sequenced from 130 patients followed in Lisbon. HBV genotype A (HBV/A) was the most prevalent (n=54, 41.5%), followed by D [HBV/D; (n=44, 33.8%)], and E [HBV/E; (n=32, 24.6%)]. Spatio-temporal evolutionary dynamics was reconstructed in BEAST using a Bayesian Markov Chain Monte Carlo method, with a GTR nucleotide substitution model, an uncorrelated lognormal relaxed molecular clock model, a Bayesian skyline plot, and a continuous diffusion model. HBV/D4 was the first subgenotype to be introduced in Portugal around 1857 (HPD 95% 1699-1931) followed by HBV/D3 and A2 a few decades later. HBV/E and HBV/A1 were introduced in Portugal later, almost simultaneously. Our results also indicate a very important role of Portugal in the exportation of HBV/D4 and A2 to Brazil and Cape Verde, respectively, at the beginning of the XX century. This work clarifies the epidemiological history of HBV in Portugal and shows that Portugal had an important role in the global spread of this virus.


2009 ◽  
Vol 14 (2) ◽  
pp. 188-196 ◽  
Author(s):  
Oliver Bown ◽  
Alice Eldridge ◽  
Jon McCormack

Throughout the short history of interactive digital music, there have been frequent calls for a new language of interaction that incorporates and acknowledges the unique capabilities of the computational medium. In this paper we suggest that a conceptualisation of possible modes of performance–time interaction can only be sensibly approached in light of the ways that computers alter the social–artistic interactions that are precursive to performance. This conceptualisation hinges upon a consideration of the changing roles of composition, performer and instrument in contemporary practice. We introduce the termbehavioural objectto refer to software that has the capacity to act as the musical and social focus of interaction in digital systems. Whilst formative, this term points to a new framework for understanding the role of software in musical culture. We discuss the potential for behavioural objects to contribute actively to musical culture through two types of agency:performative agencyandmemetic agency.


2018 ◽  
pp. 141-167 ◽  
Author(s):  
Abdellah Ouaguid ◽  
Noreddine Abghour ◽  
Mohammed Ouzzif

This article presents a new framework named ANDROSCANREG (Android Permissions Scan Registry) that allows to extract and analyze the requested permissions in an Android application via a decentralized and distributed system. This framework is based on the emerging technology Blockchain whose potential is approved in the matter of transparency, reliability, security and availability without resorting to a central processing unit judged of trust. ANDROSCANREG consists of two Blockchains, the first one (PERMBC) will handle analysis, validation and preparation of the raw results so that they will persist in the second Blockchain of Bitcoin already existing (BTCBC), which will assume the role of a Registry of recovered permissions and will save the permissions history of each version of the applications being scanned via financial transactions, whose wallet source, recipient wallet and transaction value have a precise meaning. An example of a simulation will be presented to describe the different steps, actors, interactions and messages generated by the different entity of ANDROSCANREG.


2020 ◽  
Author(s):  
Laura Soul ◽  
David Wright

Recent advances in statistical approaches called Phylogenetic Comparative Methods (PCMs) have provided paleontologists with a powerful set of analytical tools for investigating evolutionary tempo and mode in fossil lineages. However, attempts to integrate PCMs with fossil data often present workers with practical challenges or unfamiliar literature. In this paper, we present guides to the theory behind, and application of, PCMs with fossil taxa. Based on an empirical dataset of Paleozoic crinoids, we present example analyses to illustrate common applications of PCMs to fossil data, including investigating patterns of correlated trait evolution, and macroevolutionary models of morphological change. We emphasize the importance of accounting for sources of uncertainty, and discuss how to evaluate model fit and adequacy. Finally, we discuss several promising methods for modelling heterogenous evolutionary dynamics with fossil phylogenies. Integrating phylogeny-based approaches with the fossil record provides a rigorous, quantitative perspective to understanding key patterns in the history of life.


Author(s):  
Devendra K Biswal ◽  
Jean V Marbaniang ◽  
Pramod Tandon

Abstract: Intercontinental dislocations between tropical regions harboring two-thirds of the flowering plants have always drawn attention from taxonomists and bio-geographers. The focus had always been on woody land plants rather than on herbs. Orchidaceae is one such family belonging to angiosperms, with an herbaceous habit and high species diversity in the tropics. Here, we investigate the evolutionary and bio-geographical history of the genus Cymbidium, which represents a monophyletic subfamily (Epidendroideae) of the orchids and comprises 50 odd species that are disjunctly distributed in tropical to temperate regions. A relatively well-resolved and highly supported phylogeny of Cymbidiums was reconstructed based on sequence analyses of internal transcribed spacer (ITS2) regions and maturaseK (matK) from the chloroplast region available on the public domain in GenBank at NCBI. Crassulacean acid metabolism (CAM) is one of the photosynthetic pathways regarded as adaptation to water stress in land plants. Hardly any information exists on correlations among the level of CAM activity, habitat, life form, and phylogenetic relationship of a plant group from an evolutionary perspective. This study examines a genus level analyses by integrating ITS and matK data to all fossil data available on orchids in a molecular Bayesian relaxed clock employed in BEAST and assessed divergence times for the genus Cymbidium with a focus on evolutionary plasticity of photosynthetic characters. Our study has enabled age estimations for the genus Cymbidum (12Ma) for the first time using BEAST by addition of previously analyzed two internal calibration points.


2018 ◽  
Vol 8 (1) ◽  
pp. 55-79 ◽  
Author(s):  
Abdellah Ouaguid ◽  
Noreddine Abghour ◽  
Mohammed Ouzzif

This article presents a new framework named ANDROSCANREG (Android Permissions Scan Registry) that allows to extract and analyze the requested permissions in an Android application via a decentralized and distributed system. This framework is based on the emerging technology Blockchain whose potential is approved in the matter of transparency, reliability, security and availability without resorting to a central processing unit judged of trust. ANDROSCANREG consists of two Blockchains, the first one (PERMBC) will handle analysis, validation and preparation of the raw results so that they will persist in the second Blockchain of Bitcoin already existing (BTCBC), which will assume the role of a Registry of recovered permissions and will save the permissions history of each version of the applications being scanned via financial transactions, whose wallet source, recipient wallet and transaction value have a precise meaning. An example of a simulation will be presented to describe the different steps, actors, interactions and messages generated by the different entity of ANDROSCANREG.


Bonplandia ◽  
2001 ◽  
Vol 11 (1-4) ◽  
pp. 1 ◽  
Author(s):  
Carmen L. Cristóbal

<p>Helicteres is a genus of Stercu/iaceae in which 60 species are accepted. It is divided into seven sections: four are monospecific and include Heicteres of the old world and Helicteres, Stegogamos and Polyandria of the new world (the last two described here ror the first time); the other three sections are redefined, Orthothecium with 17 species, Sacarolha with 18 species, and Orthocarpaea with 21 extra-american species. A comparison of the infrageneric systems of six authors is given in Table 1. In the present revision the 38 American species are taxonomically revised. The area of the genus, which includes the tropics except Africa, the areas of the sections, and the distributions of the American species are represented in 11 maps. The American monospecific sections Stegogamos and Polyandria live in the W of Mexico, and A/icteres is found on the atlantic coasts of Colombia and Venezuela. Within the total areas of the sections Orthothecium and Sacarolha, regions are delimited with high species concentration, which overlap in a great measure in central eastern Brazil. Within the section Orthothecium, which extends from the S of Mexico to the NW of Argentina and Paraguay, where only H. Lhotzkyana is found, a secondary insular area is circumscribed with four caribbean species. A key is provided for the sections as well as keys and descriptions for the 38 accepted American species. Among them, nine are new to science: H. /aciniosa, H. rufipila, H. Andersonii and H. biflexa belonging to section Orthothecium, and H. Pintonis, H. Krapovickasii, H. Cidii, H. Vallsii and H. denticulenta of section Sacarolha. With the aim of understanding the structure of Heicteres, a bibliographic revision of the species of the old world was carried out. In the Appendix of this work descriptions of both Asiatic sections are presented, and their type species are described. A provisional synopsis of the 21 species of section Orthocarpaea is presented, with the most common synonyms cited in the literature. It must be noted that the species of this section, especially those of Australia, are in great need of revision, and that the literature analysis and listing provided do not pretend to constitute such a revision. In the chapter on morphology, the types of inflorescences are interpreted and illustrated. In relation to the flower, the variability of each whorl is analyzed; in particular the symmetry and morphology of the corolla are taken into account to circumscribe sections and species. On the basis of the relative position of the different parts, two types of flowers are distinguished. In the first type, exclusive of the section Sacarolha, the pedicel, the androgynophore and the axis of the ovary are aligned, so that the flowers are straight and pseudactinomorphic. In the second type, the flowers show an angle between the pedicel and the androgynophore, or between the androgynophore and the axis of the ovary, or in both places, so that the flowers are geniculated and pseudozygomorphic.<br />Changes in the morphology of the claw are emphasized in the two superior petals or the three inferior ones, and in clockwise or anti-clockwise contorted flowers. In the illustration of each species the petal claws are represented, keeping the sequence they have within the flower. This shows the degree of differentiation between the superior and inferior petals. The significance of length relationships between claw and petal blade, and between corolla and calyx, is highlighted. Attention is called also to the spirally twisted fruits, for which the genus is named, the equally frequent straight fruits, and the intermediate forms. According to the published chromosome counts, which are summarized, the genus seems to be uniformly 2n=18. The data about two Asian species with a different number should be checked. Nine pollen types are defined for the genus and the possible evolutionary lines are interpreted, as well as their relations with the sections (Pire &amp; Cristóbal, 2001). Infra- and inter-generic relationships are discussed, but questions about the origin and evolutionary history of the genus are unresolved.<br />Concerning the differences between Helicteres and related genera, it is pointed out that the  exclusive characters of Helicteres, such as the presence of nectaries on the peduncles, geniculate androgynophore, short petal c1aw (4-8 times shorter than the calyx), and spirally twisted fruits, are not common to all species of the genus. On the contrary, characters that are present in all the species, such as perfect flowers, connate sepals, anthers with divergent thecae, lignous syncarpous fruits made of five carpels, and apterous seeds, can be found in neighboring genera. For these reasons it is understood that a species belongs to Helicteres when one or more of the exclusive characters listed above are present with one or more of the general characters, even though they are present in other genera. AH the American species are iHustrated with the sole exception of H. cuneata, known only from a phototype, as well as the type species of the extra-american sections, making a total of 41 figures.</p>


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