scholarly journals Semantic Segmentation of HeLa Cells: An Objective Comparison between one Traditional Algorithm and Three Deep-Learning Architectures

2020 ◽  
Author(s):  
Cefa Karabağ ◽  
Martin L. Jones ◽  
Christopher J. Peddie ◽  
Anne E. Weston ◽  
Lucy M. Collinson ◽  
...  
Keyword(s):  
Image Processing ◽  
Deep Learning ◽  
Ground Truth ◽  
Semantic Segmentation ◽  
Superior Performance ◽  
Processing Algorithm ◽  
Image Processing Algorithm ◽  
Segmentation Accuracy ◽  
Traditional Algorithm ◽  
Learning Architectures

AbstractIn this work, images of a HeLa cancer cell were semantically segmented with one traditional image-processing algorithm and three deep learning architectures: VGG16, ResNet18 and Inception-ResNet-v2. Three hundred slices, each 2000 × 2000 pixels, of a HeLa Cell were acquired with Serial Block Face Scanning Electron Microscopy. The deep learning architectures were pre-trained with ImageNet and then fine-tuned with transfer learning. The image-processing algorithm followed a pipeline of several traditional steps like edge detection, dilation and morphological operators. The algorithms were compared by measuring pixel-based segmentation accuracy and Jaccard index against a labelled ground truth. The results indicated a superior performance of the traditional algorithm (Accuracy = 99%, Jaccard = 93%) over the deep learning architectures: VGG16 (93%, 90%), ResNet18 (94%, 88%), Inception-ResNet-v2 (94%, 89%).

scholarly journals Semantic segmentation of HeLa cells: An objective comparison between one traditional algorithm and four deep-learning architectures

PLoS ONE ◽  
2020 ◽  
Vol 15 (10) ◽  
pp. e0230605
Author(s):  
Cefa Karabağ ◽  
Martin L. Jones ◽  
Christopher J. Peddie ◽  
Anne E. Weston ◽  
Lucy M. Collinson ◽  
...  
Keyword(s):  
Deep Learning ◽  
Hela Cells ◽  
Semantic Segmentation ◽  
Traditional Algorithm ◽  
Learning Architectures

scholarly journals Convolutional Neural Network for the Semantic Segmentation of Remote Sensing Images

2021 ◽  
Vol 26 (1) ◽  
pp. 200-215
Author(s):  
Muhammad Alam ◽  
Jian-Feng Wang ◽  
Cong Guangpei ◽  
LV Yunrong ◽  
Yuanfang Chen
Keyword(s):  
Neural Network ◽  
Remote Sensing ◽  
Neural Networks ◽  
Image Processing ◽  
Deep Learning ◽  
Semantic Segmentation ◽  
Natural Scene ◽  
Remote Sensing Images ◽  
Advantages And Disadvantages ◽  
Target Segmentation

AbstractIn recent years, the success of deep learning in natural scene image processing boosted its application in the analysis of remote sensing images. In this paper, we applied Convolutional Neural Networks (CNN) on the semantic segmentation of remote sensing images. We improve the Encoder- Decoder CNN structure SegNet with index pooling and U-net to make them suitable for multi-targets semantic segmentation of remote sensing images. The results show that these two models have their own advantages and disadvantages on the segmentation of different objects. In addition, we propose an integrated algorithm that integrates these two models. Experimental results show that the presented integrated algorithm can exploite the advantages of both the models for multi-target segmentation and achieve a better segmentation compared to these two models.

Internal quality evaluation of chestnut using nuclear magnetic resonance

2020 ◽  
Vol 0 (0) ◽  
Author(s):  
Soo Hyun Park ◽  
Sang Ha Noh ◽  
Michael J. McCarthy ◽  
Seong Min Kim
Keyword(s):  
Image Processing ◽  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Processing Algorithm ◽  
Internal Quality ◽  
Soluble Solid Content ◽  
Mr Images ◽  
Image Processing Algorithm ◽  
Internal Defects ◽  
Nuclear Magnetic

AbstractThis study was carried out to develop a prediction model for soluble solid content (SSC) of intact chestnut and to detect internal defects using nuclear magnetic resonance (NMR) relaxometry and magnetic resonance imaging (MRI). Inversion recovery and Carr–Purcell–Meiboom–Gill (CPMG) pulse sequences used to determine the longitudinal (T1) and transverse (T2) relaxation times, respectively. Partial least squares regression (PLSR) was adopted to predict SSCs of chestnuts with NMR data and histograms from MR images. The coefficient of determination (R2), root mean square error of prediction (RMSEP), ratio of prediction to deviation (RPD), and the ratio of error range (RER) of the optimized model to predict SSC were 0.77, 1.41 °Brix, 1.86, and 11.31 with a validation set. Furthermore, an image-processing algorithm has been developed to detect internal defects such as decay, mold, and cavity using MR images. The classification applied with the developed image processing algorithm was over 94% accurate to classify. Based on the results obtained, it was determined that the NMR signal could be applied for grading several levels by SSC, and MRI could be used to evaluate the internal qualities of chestnuts.

scholarly journals InstantDL: an easy-to-use deep learning pipeline for image segmentation and classification

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Dominik Jens Elias Waibel ◽  
Sayedali Shetab Boushehri ◽  
Carsten Marr
Keyword(s):  
Image Processing ◽  
Deep Learning ◽  
Specific Problem ◽  
State Of The Art ◽  
Image Data ◽  
Semantic Segmentation ◽  
Parameter Tuning ◽  
Cellular Processes ◽  
Minimal Effort ◽  
Instance Segmentation

Abstract Background Deep learning contributes to uncovering molecular and cellular processes with highly performant algorithms. Convolutional neural networks have become the state-of-the-art tool to provide accurate and fast image data processing. However, published algorithms mostly solve only one specific problem and they typically require a considerable coding effort and machine learning background for their application. Results We have thus developed InstantDL, a deep learning pipeline for four common image processing tasks: semantic segmentation, instance segmentation, pixel-wise regression and classification. InstantDL enables researchers with a basic computational background to apply debugged and benchmarked state-of-the-art deep learning algorithms to their own data with minimal effort. To make the pipeline robust, we have automated and standardized workflows and extensively tested it in different scenarios. Moreover, it allows assessing the uncertainty of predictions. We have benchmarked InstantDL on seven publicly available datasets achieving competitive performance without any parameter tuning. For customization of the pipeline to specific tasks, all code is easily accessible and well documented. Conclusions With InstantDL, we hope to empower biomedical researchers to conduct reproducible image processing with a convenient and easy-to-use pipeline.

An Image Processing Algorithm to Find New and Old Bruises

1995 ◽  
Vol 11 (5) ◽  
pp. 751-757 ◽  
Author(s):  
J. A. Throop ◽  
D. J. Aneshansley ◽  
B. L. Upchurch
Keyword(s):  
Image Processing ◽  
Processing Algorithm ◽  
Image Processing Algorithm
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