scholarly journals Cryo-EM reveals the dynamic interplay between mitochondrial Hsp90 and SdhB folding intermediates

2020 ◽  
Author(s):  
Yanxin Liu ◽  
Daniel Elnatan ◽  
Ming Sun ◽  
Alexander G. Myasnikov ◽  
David A. Agard
Keyword(s):  
Protein Import ◽  
Atp Hydrolysis ◽  
Mitochondrial Dynamics ◽  
Critical Role ◽  
Mitochondrial Protein ◽  
Client Protein ◽  
Mitochondrial Protein Import ◽  
Folding Intermediates ◽  
B Subunit ◽  
Client Proteins

AbstractTRAP1 is a mitochondrion specific Hsp90, a ubiquitous chaperone family that mediates the folding and maturation of hundreds of “client” proteins. Through the interaction with client proteins, TRAP1 regulates mitochondrial protein homeostasis, oxidative phosphorylation/glycolysis balance, and plays a critical role in mitochondrial dynamics and disease. However, the molecular mechanism of client protein recognition and remodeling by TRAP1 remains elusive. Here we established the succinate dehydrogenase B subunit (SdhB) from mitochondrial complex II as a client protein for TRAP1 amenable to detailed biochemical and structural investigation. SdhB accelerates the rate of TRAP1 dimer closure and ATP hydrolysis by 5-fold. Cryo-EM structures of the TRAP1:SdhB complex show TRAP1 stabilizes SdhB folding intermediates by trapping an SdhB segment in the TRAP1 lumen. Unexpectedly, client protein binding induces an asymmetric to symmetric transition in the TRAP1 closed state. Our results highlight a client binding mechanism conserved throughout Hsp90s that transcends the need for cochaperones and provide molecular insights into how TRAP1 modulates protein folding within mitochondria. Our structures also suggest a potential role for TRAP1 in Fe-S cluster biogenesis and mitochondrial protein import and will guide small molecule development for therapeutic intervention in specific TRAP1 client interactions.

Msp1/ATAD1 in Protein Quality Control and Regulation of Synaptic Activities

2020 ◽  
Vol 36 (1) ◽  
pp. 141-164
Author(s):  
Lan Wang ◽  
Peter Walter
Keyword(s):  
Quality Control ◽  
Mitochondrial Membrane ◽  
Protein Import ◽  
Protein Quality ◽  
Atp Hydrolysis ◽  
Mitochondrial Protein ◽  
Neurotransmitter Receptors ◽  
Functional Specialization ◽  
Outer Mitochondrial Membrane ◽  
Mitochondrial Protein Import

Mitochondrial function depends on the efficient import of proteins synthesized in the cytosol. When cells experience stress, the efficiency and faithfulness of the mitochondrial protein import machinery are compromised, leading to homeostatic imbalances and damage to the organelle. Yeast Msp1 (mitochondrial sorting of proteins 1) and mammalian ATAD1 (ATPase family AAA domain–containing 1) are orthologous AAA proteins that, fueled by ATP hydrolysis, recognize and extract mislocalized membrane proteins from the outer mitochondrial membrane. Msp1 also extracts proteins that have become stuck in the import channel. The extracted proteins are targeted for proteasome-dependent degradation or, in the case of mistargeted tail-anchored proteins, are given another chance to be routed correctly. In addition, ATAD1 is implicated in the regulation of synaptic plasticity, mediating the release of neurotransmitter receptors from postsynaptic scaffolds to allow their trafficking. Here we discuss how structural and functional specialization imparts the unique properties that allow Msp1/ATAD1 ATPases to fulfill these diverse functions and also highlight outstanding questions in the field.

scholarly journals Sequence and structural requirements of a mitochondrial protein import signal defined by saturation cassette mutagenesis

1989 ◽  
Vol 9 (3) ◽  
pp. 1014-1025
Author(s):  
D M Bedwell ◽  
S A Strobel ◽  
K Yun ◽  
G D Jongeward ◽  
S D Emr
Keyword(s):  
Protein Import ◽  
Critical Role ◽  
Mitochondrial Protein ◽  
Point Mutations ◽  
Beta Subunit ◽  
Yeast Cells ◽  
Signal Function ◽  
Subunit Gene ◽  
Mitochondrial Protein Import ◽  
Beta Subunit Gene

The Saccharomyces cerevisiae F1-ATPase beta subunit precursor contains redundant mitochondrial protein import information at its NH2 terminus (D. M. Bedwell, D. J. Klionsky, and S. D. Emr, Mol. Cell. Biol. 7:4038-4047, 1987). To define the critical sequence and structural features contained within this topogenic signal, one of the redundant regions (representing a minimal targeting sequence) was subjected to saturation cassette mutagenesis. Each of 97 different mutant oligonucleotide isolates containing single (32 isolates), double (45 isolates), or triple (20 isolates) point mutations was inserted in front of a beta-subunit gene lacking the coding sequence for its normal import signal (codons 1 through 34 were deleted). The phenotypic and biochemical consequences of these mutations were then evaluated in a yeast strain deleted for its normal beta-subunit gene (delta atp2). Consistent with the lack of an obvious consensus sequence for mitochondrial protein import signals, many mutations occurring throughout the minimal targeting sequence did not significantly affect its import competence. However, some mutations did result in severe import defects. In these mutants, beta-subunit precursor accumulated in the cytoplasm, and the yeast cells exhibited a respiration defective phenotype. Although point mutations have previously been identified that block mitochondrial protein import in vitro, a subset of the mutations reported here represents the first single missense mutations that have been demonstrated to significantly block mitochondrial protein import in vivo. The previous lack of such mutations in the beta-subunit precursor apparently relates to the presence of redundant import information in this import signal. Together, our mutants define a set of constraints that appear to be critical for normal activity of this (and possibly other) import signals. These include the following: (i) mutant signals that exhibit a hydrophobic moment greater than 5.5 for the predicted amphiphilic alpha-helical conformation of this sequence direct near normal levels of beta-subunit import (ii) at least two basic residues are necessary for efficient signal function, (iii) acidic amino acids actively interfere with import competence, and (iv) helix-destabilizing residues also interfere with signal function. These experimental observations provide support for mitochondrial protein import models in which both the structure and charge of the import signal play a critical role in directing mitochondrial protein targeting and import.

Altered mitochondrial morphology and defective protein import reveal novel roles for Bax and/or Bak in skeletal muscle

2013 ◽  
Vol 305 (5) ◽  
pp. C502-C511 ◽  
Author(s):  
Yuan Zhang ◽  
Sobia Iqbal ◽  
Michael F. N. O'Leary ◽  
Keir J. Menzies ◽  
Ayesha Saleem ◽  
...  
Keyword(s):  
Skeletal Muscle ◽  
Mitochondrial Function ◽  
Protein Import ◽  
Mitochondrial Dynamics ◽  
Mitochondrial Protein ◽  
Heat Shock Protein 90 ◽  
Mitochondrial Morphology ◽  
Double Knockout ◽  
Mitochondrial Protein Import ◽  
Protein Components

The function Bax and/or Bak in constituting a gateway for mitochondrial apoptosis in response to apoptotic stimuli has been unequivocally demonstrated. However, recent work has suggested that Bax/Bak may have unrecognized nonapoptotic functions related to mitochondrial function in nonstressful environments. Wild-type (WT) and Bax/Bak double knockout (DKO) mice were used to determine alternative roles for Bax and Bak in mitochondrial morphology and protein import in skeletal muscle. The absence of Bax and/or Bak altered mitochondrial dynamics by regulating protein components of the organelle fission and fusion machinery. Moreover, DKO mice exhibited defective mitochondrial protein import, both into the matrix and outer membrane compartments, which was consistent with our observations of impaired membrane potential and attenuated expression of protein import machinery (PIM) components in intermyofibrillar mitochondria. Furthermore, the cytosolic chaperones heat-shock protein 90 (Hsp90) and binding immunoglobulin protein (BiP) were markedly increased with the deletion of Bax/Bak, indicating that the cytosolic environment related to protein folding may be changed in DKO mice. Interestingly, endurance training fully restored the deficiency of protein import in DKO mice, likely via the upregulation of PIM components and through improved cytosolic chaperone protein expression. Thus our results emphasize novel roles for Bax and/or Bak in mitochondrial function and provide evidence, for the first time, of a curative function of exercise training in ameliorating a condition of defective mitochondrial protein import.

scholarly journals Reinvestigation of the Requirement of Cytosolic ATP for Mitochondrial Protein Import

2004 ◽  
Vol 279 (19) ◽  
pp. 19464-19470 ◽  
Author(s):  
Takeyoshi Asai ◽  
Takashi Takahashi ◽  
Masatoshi Esaki ◽  
Shuh-ichi Nishikawa ◽  
Kenzo Ohtsuka ◽  
...  
Keyword(s):  
Protein Import ◽  
Atp Hydrolysis ◽  
Mitochondrial Protein ◽  
Mitochondrial Matrix ◽  
Mitochondrial Protein Import ◽  
Precursor Proteins ◽  
Reticulocyte Lysate ◽  
Binding To Mitochondria

Protein import into mitochondria requires the energy of ATP hydrolysis inside and/or outside mitochondria. Although the role of ATP in the mitochondrial matrix in mitochondrial protein import has been extensively studied, the role of ATP outside mitochondria (external ATP) remains only poorly characterized. Here we developed a protocol for depletion of external ATP without significantly reducing the import competence of precursor proteins synthesizedin vitrowith reticulocyte lysate. We tested the effects of external ATP on the import of various precursor proteins into isolated yeast mitochondria. We found that external ATP is required for maintenance of the import competence of mitochondrial precursor proteins but that, once they bind to mitochondria, the subsequent translocation of presequence-containing proteins, but not the ADP/ATP carrier, proceeds independently of external ATP. Because depletion of cytosolic Hsp70 led to a decrease in the import competence of mitochondrial precursor proteins, external ATP is likely utilized by cytosolic Hsp70. In contrast, the ADP/ATP carrier requires external ATP for efficient import into mitochondria even after binding to mitochondria, a situation that is only partly attributed to cytosolic Hsp70.

scholarly journals Sequence and structural requirements of a mitochondrial protein import signal defined by saturation cassette mutagenesis.

1989 ◽  
Vol 9 (3) ◽  
pp. 1014-1025 ◽  
Author(s):  
D M Bedwell ◽  
S A Strobel ◽  
K Yun ◽  
G D Jongeward ◽  
S D Emr
Keyword(s):  
Protein Import ◽  
Critical Role ◽  
Mitochondrial Protein ◽  
Point Mutations ◽  
Beta Subunit ◽  
Yeast Cells ◽  
Signal Function ◽  
Subunit Gene ◽  
Mitochondrial Protein Import ◽  
Beta Subunit Gene

The Saccharomyces cerevisiae F1-ATPase beta subunit precursor contains redundant mitochondrial protein import information at its NH2 terminus (D. M. Bedwell, D. J. Klionsky, and S. D. Emr, Mol. Cell. Biol. 7:4038-4047, 1987). To define the critical sequence and structural features contained within this topogenic signal, one of the redundant regions (representing a minimal targeting sequence) was subjected to saturation cassette mutagenesis. Each of 97 different mutant oligonucleotide isolates containing single (32 isolates), double (45 isolates), or triple (20 isolates) point mutations was inserted in front of a beta-subunit gene lacking the coding sequence for its normal import signal (codons 1 through 34 were deleted). The phenotypic and biochemical consequences of these mutations were then evaluated in a yeast strain deleted for its normal beta-subunit gene (delta atp2). Consistent with the lack of an obvious consensus sequence for mitochondrial protein import signals, many mutations occurring throughout the minimal targeting sequence did not significantly affect its import competence. However, some mutations did result in severe import defects. In these mutants, beta-subunit precursor accumulated in the cytoplasm, and the yeast cells exhibited a respiration defective phenotype. Although point mutations have previously been identified that block mitochondrial protein import in vitro, a subset of the mutations reported here represents the first single missense mutations that have been demonstrated to significantly block mitochondrial protein import in vivo. The previous lack of such mutations in the beta-subunit precursor apparently relates to the presence of redundant import information in this import signal. Together, our mutants define a set of constraints that appear to be critical for normal activity of this (and possibly other) import signals. These include the following: (i) mutant signals that exhibit a hydrophobic moment greater than 5.5 for the predicted amphiphilic alpha-helical conformation of this sequence direct near normal levels of beta-subunit import (ii) at least two basic residues are necessary for efficient signal function, (iii) acidic amino acids actively interfere with import competence, and (iv) helix-destabilizing residues also interfere with signal function. These experimental observations provide support for mitochondrial protein import models in which both the structure and charge of the import signal play a critical role in directing mitochondrial protein targeting and import.

scholarly journals Mgr2 regulates mitochondrial preprotein import by associating with channel-forming Tim23 subunit

2020 ◽  
Vol 31 (11) ◽  
pp. 1112-1123 ◽  
Author(s):  
Srujan Kumar Matta ◽  
Abhishek Kumar ◽  
Patrick D’Silva
Keyword(s):  
Crucial Role ◽  
Protein Import ◽  
Mitochondrial Dynamics ◽  
Mitochondrial Protein ◽  
Transmembrane Region ◽  
Mitochondrial Protein Import

Mgr2 regulates the gating behavior of the TIM23 complex and mgr2∆ and causes aberrations in mitochondrial dynamics. Here, we show that Mgr2 directly associates with channel-forming Tim23. Additionally, the Mgr2 transmembrane region plays a crucial role in coupling the TIM23 complex with OXPHOS machinery and thus regulates mitochondrial protein import and dynamics.

scholarly journals Role of Mitochondrial Protein Import in Age-Related Neurodegenerative and Cardiovascular Diseases

Cells ◽  
2021 ◽  
Vol 10 (12) ◽  
pp. 3528
Author(s):  
Andrey Bogorodskiy ◽  
Ivan Okhrimenko ◽  
Dmitrii Burkatovskii ◽  
Philipp Jakobs ◽  
Ivan Maslov ◽  
...  
Keyword(s):  
Cardiovascular Diseases ◽  
Cell Survival ◽  
Protein Import ◽  
Fundamental System ◽  
State Of The Art ◽  
Critical Role ◽  
Mitochondrial Protein ◽  
Mitochondrial Protein Import ◽  
Age Related

Mitochondria play a critical role in providing energy, maintaining cellular metabolism, and regulating cell survival and death. To carry out these crucial functions, mitochondria employ more than 1500 proteins, distributed between two membranes and two aqueous compartments. An extensive network of dedicated proteins is engaged in importing and sorting these nuclear-encoded proteins into their designated mitochondrial compartments. Defects in this fundamental system are related to a variety of pathologies, particularly engaging the most energy-demanding tissues. In this review, we summarize the state-of-the-art knowledge about the mitochondrial protein import machinery and describe the known interrelation of its failure with age-related neurodegenerative and cardiovascular diseases.

scholarly journals Role of the Mitochondrial Protein Import Machinery and Protein Processing in Heart Disease

2021 ◽  
Vol 8 ◽  
Author(s):  
Fujie Zhao ◽  
Ming-Hui Zou
Keyword(s):  
Heart Disease ◽  
Protein Import ◽  
Protein Quality ◽  
Mitochondrial Dynamics ◽  
Mitochondrial Protein ◽  
Nuclear Genome ◽  
Major Protein ◽  
Intermembrane Space ◽  
Mitochondrial Protein Import ◽  
Mitochondrial Import

Mitochondria are essential organelles for cellular energy production, metabolic homeostasis, calcium homeostasis, cell proliferation, and apoptosis. About 99% of mammalian mitochondrial proteins are encoded by the nuclear genome, synthesized as precursors in the cytosol, and imported into mitochondria by mitochondrial protein import machinery. Mitochondrial protein import systems function not only as independent units for protein translocation, but also are deeply integrated into a functional network of mitochondrial bioenergetics, protein quality control, mitochondrial dynamics and morphology, and interaction with other organelles. Mitochondrial protein import deficiency is linked to various diseases, including cardiovascular disease. In this review, we describe an emerging class of protein or genetic variations of components of the mitochondrial import machinery involved in heart disease. The major protein import pathways, including the presequence pathway (TIM23 pathway), the carrier pathway (TIM22 pathway), and the mitochondrial intermembrane space import and assembly machinery, related translocases, proteinases, and chaperones, are discussed here. This review highlights the importance of mitochondrial import machinery in heart disease, which deserves considerable attention, and further studies are urgently needed. Ultimately, this knowledge may be critical for the development of therapeutic strategies in heart disease.

How to get to the other side of the mitochondrial inner membrane – the protein import motor

2020 ◽  
Vol 401 (6-7) ◽  
pp. 723-736 ◽  
Author(s):  
Dejana Mokranjac
Keyword(s):  
Protein Import ◽  
Atp Hydrolysis ◽  
Mitochondrial Protein ◽  
The Other ◽  
Mitochondrial Protein Import ◽  
Inner Membrane ◽  
Mitochondrial Inner Membrane ◽  
The Matrix ◽  
Biogenesis Of Mitochondria ◽  
Translocation Pathway

AbstractBiogenesis of mitochondria relies on import of more than 1000 different proteins from the cytosol. Approximately 70% of these proteins follow the presequence pathway – they are synthesized with cleavable N-terminal extensions called presequences and reach the final place of their function within the organelle with the help of the TOM and TIM23 complexes in the outer and inner membranes, respectively. The translocation of proteins along the presequence pathway is powered by the import motor of the TIM23 complex. The import motor of the TIM23 complex is localized at the matrix face of the inner membrane and is likely the most complicated Hsp70-based system identified to date. How it converts the energy of ATP hydrolysis into unidirectional translocation of proteins into mitochondria remains one of the biggest mysteries of this translocation pathway. Here, the knowns and the unknowns of the mitochondrial protein import motor are discussed.

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