scholarly journals Linking RNA Sequence, Structure, and Function on Massively Parallel High-Throughput Sequencers

2018 ◽  
Vol 11 (10) ◽  
pp. a032300 ◽  
Author(s):  
Sarah K. Denny ◽  
William J. Greenleaf
PLoS ONE ◽  
2008 ◽  
Vol 3 (7) ◽  
pp. e2720 ◽  
Author(s):  
Nicholas O. Fischer ◽  
Jeffrey B.-H. Tok ◽  
Theodore M. Tarasow

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Huihui Li ◽  
Mingzhe Xie ◽  
Yan Wang ◽  
Ludong Yang ◽  
Zhi Xie ◽  
...  

AbstractriboCIRC is a translatome data-oriented circRNA database specifically designed for hosting, exploring, analyzing, and visualizing translatable circRNAs from multi-species. The database provides a comprehensive repository of computationally predicted ribosome-associated circRNAs; a manually curated collection of experimentally verified translated circRNAs; an evaluation of cross-species conservation of translatable circRNAs; a systematic de novo annotation of putative circRNA-encoded peptides, including sequence, structure, and function; and a genome browser to visualize the context-specific occupant footprints of circRNAs. It represents a valuable resource for the circRNA research community and is publicly available at http://www.ribocirc.com.


2017 ◽  
Vol 112 (3) ◽  
pp. 237a
Author(s):  
Piyali Guhathakurta ◽  
Ewa Prochniewicz ◽  
Kurt C. Peterson ◽  
Benjamin D. Grant ◽  
Gregory D. Gillispie ◽  
...  

2014 ◽  
pp. 219-243 ◽  
Author(s):  
Joel Bruegger ◽  
Grace Caldara ◽  
Joris Beld ◽  
Michael D. Burkart ◽  
Shiou-Chuan Sheryl Tsai

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