scholarly journals Precise implications for real-space pair distribution function modeling of effects intrinsic to modern time-of-flight neutron diffractometers

2018 ◽  
Vol 74 (4) ◽  
pp. 293-307 ◽  
Author(s):  
Daniel Olds ◽  
Claire N. Saunders ◽  
Megan Peters ◽  
Thomas Proffen ◽  
Joerg Neuefeind ◽  
...  
Keyword(s):  
Distribution Function ◽  
Pair Distribution Function ◽  
Amorphous Materials ◽  
Best Practice ◽  
Time Of Flight ◽  
Real Space ◽  
Mitigation Strategies ◽  
Total Scattering ◽  
Conventional Analysis ◽  
Pdf Analysis

Total scattering and pair distribution function (PDF) methods allow for detailed study of local atomic order and disorder, including materials for which Rietveld refinements are not traditionally possible (amorphous materials, liquids, glasses and nanoparticles). With the advent of modern neutron time-of-flight (TOF) instrumentation, total scattering studies are capable of producing PDFs with ranges upwards of 100–200 Å, covering the correlation length scales of interest for many materials under study. Despite this, the refinement and subsequent analysis of data are often limited by confounding factors that are not rigorously accounted for in conventional analysis programs. While many of these artifacts are known and recognized by experts in the field, their effects and any associated mitigation strategies largely exist as passed-down `tribal' knowledge in the community, and have not been concisely demonstrated and compared in a unified presentation. This article aims to explicitly demonstrate, through reviews of previous literature, simulated analysis and real-world case studies, the effects of resolution, binning, bounds, peak shape, peak asymmetry, inconsistent conversion of TOF to d spacing and merging of multiple banks in neutron TOF data as they directly relate to real-space PDF analysis. Suggestions for best practice in analysis of data from modern neutron TOF total scattering instruments when using conventional analysis programs are made, as well as recommendations for improved analysis methods and future instrument design.

scholarly journals A simple correction for the parallax effect in X-ray pair distribution function measurements

2019 ◽  
Vol 52 (5) ◽  
pp. 1072-1076 ◽  
Author(s):  
Frederick Marlton ◽  
Oleh Ivashko ◽  
Martin v. Zimmerman ◽  
Olof Gutowski ◽  
Ann-Christin Dippel ◽  
...  
Keyword(s):  
Distribution Function ◽  
Rietveld Refinement ◽  
Powder Diffraction ◽  
Pair Distribution Function ◽  
Reference Data ◽  
Real Space ◽  
X Ray ◽  
Local Structures ◽  
Pdf Analysis ◽  
Complex Nanostructures

Total scattering and pair distribution function (PDF) analysis has created new insights that traditional powder diffraction methods have been unable to achieve in understanding the local structures of materials exhibiting disorder or complex nanostructures. Care must be taken in such analyses as subtle and discrete features in the PDF can easily be artefacts generated in the measurement process, which can result in unphysical models and interpretation. The focus of this study is an artefact called the parallax effect, which can occur in area detectors with thick detection layers during the collection of X-ray PDF data. This effect results in high-Q peak offsets, which subsequently cause an r-dependent shift in the PDF peak positions in real space. Such effects should be accounted for if a truly accurate model is to be achieved, and a simple correction that can be conducted via a Rietveld refinement against the reference data is proposed.

scholarly journals Total-scattering pair-distribution function analysis of zinc from high-energy synchrotron data

2019 ◽  
Vol 33 (33) ◽  
pp. 1950410 ◽  
Author(s):  
Ahmad S. Masadeh ◽  
Moneeb T. M. Shatnawi ◽  
Ghosoun Adawi ◽  
Yang Ren
Keyword(s):  
Crystal Structure ◽  
Distribution Function ◽  
Pair Distribution Function ◽  
Function Analysis ◽  
High Energy ◽  
Ambient Conditions ◽  
Total Scattering ◽  
X Ray ◽  
Zinc Metal ◽  
Pdf Analysis

The crystal structure of zinc metal deviates from the ideal hexagonal close packing structure by a significantly increased axial ratio (c/a). The local atomic structure of zinc metal is investigated using the total scattering atomic pair distribution function (PDF) analysis based on X-ray powder diffraction data collected at ambient conditions. The X-ray total scattering PDF analysis confirms that the crystal structure of zinc can be described in terms of wurtzite structure, but with an anomalously atomic displacement parameters [Formula: see text], indicating a significant displacement disorder along the [Formula: see text]-axis. For the long [Formula: see text]-range PDF refinements, the thermal motion of zinc shows a notable anisotropy as expressed by the ratio [Formula: see text]/[Formula: see text] of 2.5 at ambient conditions. This average distortion level along the [Formula: see text]-axis, was not reflected locally for the features below 5.0 Å as it fits the high [Formula: see text] region. Based on PDF refinements over different [Formula: see text]-ranges, we measure an interesting increase of the [Formula: see text] value with decreasing the [Formula: see text]-range of the refinement. This suggests that the local structure features in zinc metal differ from the average structure ones.

scholarly journals PDF Analysis on a Laboratory System: Adapting the Experiment to the Material

2014 ◽  
Vol 70 (a1) ◽  
pp. C870-C870
Author(s):  
Céleste Reiss ◽  
Milen Gateshki ◽  
Marco Sommariva
Keyword(s):  
Distribution Function ◽  
Pair Distribution Function ◽  
Amorphous Materials ◽  
Nearest Neighbors ◽  
High Energy ◽  
Experimental Point ◽  
Laboratory System ◽  
Crystalline Materials ◽  
X Ray ◽  
Pdf Analysis

The increased interest in recent years regarding the properties and applications of nanomaterials has also created the need to characterize the structures of these materials. However, due to the lack of long-range atomic ordering, the structures of nanostructured and amorphous materials are not accessible by conventional diffraction methods used to study crystalline materials. One of the most promising techniques to study nanostructures using X-ray diffraction is by using the total scattering (Bragg peaks and diffuse scattering) from the samples and the pair distribution function (PDF) analysis. The pair distribution function provides the probability of finding atoms separated by a certain distance. This function is not direction-dependent; it only looks at the absolute value of the distance between the nearest neighbors, the next nearest neighbors and so on. The method can therefore also be used to analyze non-crystalline materials. From experimental point of view a typical PDF analysis requires the use of intense high-energy X-ray radiation (E ≥ 20 KeV) and a wide 2θ range. After the initial feasibility studies regarding the use of standard laboratory diffraction equipment for PDF analysis [1-3] this application has been further developed to achieve improved data quality and to extend the range of materials, environmental conditions and geometrical configurations that can be used for PDF experiments. Studies performed on different nanocrystalline and amorphous materials of scientific and technological interest, including organic substances, oxides, metallic alloys, etc. have demonstrated that PDF analysis with a laboratory diffractometer can be a valuable tool for structural characterization of nanomaterials. This contribution presents several examples of laboratory PDF studies, in which the experimental conditions have been successfully adapted to match the specific requirements of materials under investigation.

Mitigation of errors in pair distribution function analysis of nanoparticles

2011 ◽  
Vol 44 (4) ◽  
pp. 788-797 ◽  
Author(s):  
Katharine Mullen ◽  
Igor Levin
Keyword(s):  
Distribution Function ◽  
Pair Distribution Function ◽  
Function Analysis ◽  
Structural Parameters ◽  
Real Space ◽  
Scattering Data ◽  
Parameter Estimates ◽  
Total Scattering ◽  
Counting Statistics ◽  
Space Data

Information on the size and structure of nanoparticles can be obtainedviaanalysis of the atomic pair distribution function (PDF), which is calculated as the Fourier transform of X-ray/neutron total scattering. The structural parameters are commonly extracted by fitting a model PDF calculated from atomic coordinates to the experimental data. This paper discusses procedures for minimizing systematic errors in PDF calculations for nanoparticles and also considers the effects of noise due to counting statistics in total scattering data used to obtain the PDF. The results presented here demonstrate that smoothing of statistical noise in reciprocal-space data can improve the precision of parameter estimates obtained from PDF analysis, facilitating identification of the correct model (from multiple plausible choices) from real-space PDF fits.

scholarly journals Total scattering and pair distribution function analysis in modelling disorder in PZN (PbZn1/3Nb2/3O3)

IUCrJ ◽  
2016 ◽  
Vol 3 (1) ◽  
pp. 20-31 ◽  
Author(s):  
Ross E. Whitfield ◽  
Darren J. Goossens ◽  
T. Richard Welberry
Keyword(s):  
Distribution Function ◽  
Diffuse Scattering ◽  
Pair Distribution Function ◽  
Short Range ◽  
Function Analysis ◽  
Qualitative Comparison ◽  
Total Scattering ◽  
Local Ordering ◽  
Pdf Analysis ◽  
Short Range Correlations

The ability of the pair distribution function (PDF) analysis of total scattering (TS) from a powder to determine the local ordering in ferroelectric PZN (PbZn1/3Nb2/3O3) has been explored by comparison with a model established using single-crystal diffuse scattering (SCDS). While X-ray PDF analysis is discussed, the focus is on neutron diffraction results because of the greater extent of the data and the sensitivity of the neutron to oxygen atoms, the behaviour of which is important in PZN. The PDF was shown to be sensitive to many effects not apparent in the average crystal structure, including variations in the B-site—O separation distances and the fact that 〈110〉 Pb2+ displacements are most likely. A qualitative comparison between SCDS and the PDF shows that some features apparent in SCDS were not apparent in the PDF. These tended to pertain to short-range correlations in the structure, rather than to interatomic separations. For example, in SCDS the short-range alternation of the B-site cations was quite apparent in diffuse scattering at (½ ½ ½), whereas it was not apparent in the PDF.

scholarly journals Characterization of Nanomaterials with Total Scattering and Pair Distribution Function Analysis: Examples from Metal Oxide Nanochemistry

2021 ◽  
Vol 75 (5) ◽  
pp. 368-375
Author(s):  
Kirsten M. Ø. Jensen
Keyword(s):  
Distribution Function ◽  
Metal Oxide ◽  
Pair Distribution Function ◽  
Bulk Material ◽  
Function Analysis ◽  
Structure Characterization ◽  
Scattering Data ◽  
Material Structure ◽  
Total Scattering ◽  
Pdf Analysis

The development of new functional nanomaterials builds on an understanding of the intricate relation between material structure and properties. Only by knowing the atomic arrangement can the mechanisms responsible for material properties be elucidated and new materials and technologies developed. Nanomaterials challenge the crystallographic techniques often used for structure characterization, and the structure of many nanomaterials are therefore often assumed to be 'cut-outs' of the corresponding bulk material. Here, I will discuss how Pair Distribution Function (PDF) analysis of total scattering data can aid nanochemists in obtaining a structural understanding of nanoscale materials, focusing on examples from metal oxide chemistry.

Simultaneous reverse Monte Carlo refinements of local structures in perovskite solid solutions using EXAFS and the total scattering pair-distribution function

2008 ◽  
Vol 41 (4) ◽  
pp. 705-714 ◽  
Author(s):  
Victor Krayzman ◽  
Igor Levin ◽  
Mathew G. Tucker
Keyword(s):  
Monte Carlo ◽  
Distribution Function ◽  
Solid Solutions ◽  
Pair Distribution Function ◽  
Computer Software ◽  
Real Space ◽  
Reverse Monte Carlo ◽  
Total Scattering ◽  
X Ray ◽  
Local Structures

Reverse Monte Carlo (RMC) refinements using a combined real-space fit of the neutron/X-ray total scattering pair-distribution function (PDF) and the extended X-ray absorption fine structure (EXAFS) were developed and implemented as an extension to the public domain computer softwareRMCProfile. The effectiveness of combined PDF/EXAFS RMC refinements was tested using perovskite Ca(Zr,Ti)O3solid solutions. The analyses revealed that combining two types of data yields correct distributions of the Ti—O and Zr—O distances that could not be recovered using either of the techniques alone because of the substantial overlap between the Ti—O and Zr—O partial PDFs. The combined refinements enabled reasonably accurate reproduction of most of the local structure characteristics, including the dependence of Ca displacements on the localB-cation coordination around Ca.

scholarly journals A previously unknown cyclic alkanolamine and molecular ranking using the pair distribution function

2021 ◽  
Vol 77 (6) ◽  
Author(s):  
Gianpiero Gallo ◽  
Maxwell W. Terban ◽  
Igor Moudrakovski ◽  
Tatjana Huber ◽  
Martin Etter ◽  
...  
Keyword(s):  
Molecular Structure ◽  
Distribution Function ◽  
Pair Distribution Function ◽  
Real Space ◽  
Gaseous Ammonia ◽  
Orthorhombic Space Group ◽  
Hexagonal Ring ◽  
Cell Parameters ◽  
Carbon And Nitrogen ◽  
Pdf Analysis

A new six-membered cyclic alkanolamine with chemical formula C6H15N3O3 was synthesized by the reaction of glycolaldehyde with gaseous ammonia. The molecular structure, characterized by a hexagonal ring of alternating carbon and nitrogen atoms with three hydroxymethyl groups attached to the carbon atoms, could not be unambiguously determined by elemental analysis and 1H/13C/15N NMR. The molecular structure and conformation were further determined using a combination of vibrational spectroscopy (IR and Raman) and real-space pair distribution function (PDF) analysis. The crystal structure was determined ab initio from laboratory X-ray powder diffraction (XRPD) with orthorhombic space group Ama2 (No. 40) and unit-cell parameters a = 12.1054 (2) Å, b = 13.5537 (2) Å and c = 5.20741 (8) Å. Consistent structure models could be obtained by symmetry-independent PDF and PDF-Rietveld co-refinements. Independent local structure refinements indicate that the most likely deviations from the average structure consist of small tilting and translational distortions of hydrogen-bonded molecular stacks. Thermal analysis (TG/DTA) and temperature-dependent XRPD measurements were also performed to determine the thermal behavior.

Real-Space X-Ray Pair Distribution Function Analysis and Molecular-Dynamics Modelling of Diflunisal Channel Hydrates

2020 ◽  
Author(s):  
Anuradha Pallipurath ◽  
Francesco Civati ◽  
Jonathan Skelton ◽  
Dean Keeble ◽  
Clare Crowley ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Distribution Function ◽  
Structural Dynamics ◽  
First Principles ◽  
Pair Distribution Function ◽  
Function Analysis ◽  
Real Space ◽  
X Ray ◽  
Dynamics Modelling ◽  
Dynamics Simulations

X-ray pair distribution function analysis is used with first-principles molecular dynamics simulations to study the co-operative H<sub>2</sub>O binding, structural dynamics and host-guest interactions in the channel hydrate of diflunisal.

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