Nutrigenomic marker discovery by de novo transcriptomic sequencing during early development of the tropical gar ( Atractosteus tropicus )

2021 ◽  
Author(s):  
Talhia Martínez‐Burguete ◽  
Emyr Saul Peña‐Marin ◽  
Alejandra García‐Gasca ◽  
Carlos Alfonso Alvarez‐González ◽  
Raúl Llera‐Herrera
Keyword(s):  
Early Development ◽  
De Novo ◽  
Transcriptomic Sequencing ◽  
Tropical Gar ◽  
Marker Discovery ◽  
Atractosteus Tropicus

scholarly journals Early Development and Rupture of De Novo Aneurysm. Case Report.

2002 ◽  
Vol 42 (8) ◽  
pp. 334-337 ◽  
Author(s):  
Jae Hong SIM ◽  
Soo Chun KIM ◽  
Moo Seong KIM
Keyword(s):  
Case Report ◽  
Early Development ◽  
De Novo ◽  
De Novo Aneurysm

Partial sequence characterization and ontogenetic expression of genes involved in lipid metabolism in the tropical gar ( Atractosteus tropicus )

2018 ◽  
Vol 50 (1) ◽  
pp. 162-172 ◽  
Author(s):  
Luis D. Jiménez‐Martínez ◽  
Carlos A. Álvarez‐González ◽  
Erick De la Cruz‐Hernández ◽  
Dariel Tovar‐Ramírez ◽  
Mario A. Galaviz ◽  
...  
Keyword(s):  
Lipid Metabolism ◽  
Partial Sequence ◽  
Sequence Characterization ◽  
Expression Of Genes ◽  
Tropical Gar ◽  
Atractosteus Tropicus

Partial characterization of digestive proteases in tropical gar Atractosteus tropicus juveniles

2013 ◽  
Author(s):  
R. Guerrero-Zárate ◽  
C. A. Alvarez-González ◽  
M. A. Olvera-Novoa ◽  
N. Perales-García ◽  
C. A. Frías-Quintana ◽  
...  
Keyword(s):  
Partial Characterization ◽  
Digestive Proteases ◽  
Tropical Gar ◽  
Atractosteus Tropicus

The complete mitochondrial DNA of the tropical gar (Atractosteus tropicus)

2014 ◽  
Vol 27 (1) ◽  
pp. 557-558 ◽  
Author(s):  
Miguel A. Del Río-Portilla ◽  
Carmen E. Vargas-Peralta ◽  
Fabiola Lafarga-De La Cruz ◽  
Lenin Arias-Rodriguez ◽  
Rigoberto Delgado-Vega ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Tropical Gar ◽  
Atractosteus Tropicus

scholarly journals Species-Specific Marker Discovery in Tilapia

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Mochamad Syaifudin ◽  
Michaël Bekaert ◽  
John B. Taggart ◽  
Kerry L. Bartie ◽  
Stefanie Wehner ◽  
...  
Keyword(s):  
Phylogenetic Trees ◽  
Restriction Site ◽  
De Novo ◽  
Snp Markers ◽  
Specific Marker ◽  
Nucleotide Polymorphism ◽  
Single Nucleotide ◽  
Species Analysis ◽  
Species Specific ◽  
Marker Discovery

Abstract Tilapias (family Cichlidae) are of importance in aquaculture and fisheries. Hybridisation and introgression are common within tilapia genera but are difficult to analyse due to limited numbers of species-specific genetic markers. We tested the potential of double digested restriction-site associated DNA (ddRAD) sequencing for discovering single nucleotide polymorphism (SNP) markers to distinguish between 10 tilapia species. Analysis of ddRAD data revealed 1,371 shared SNPs in the de novo-based analysis and 1,204 SNPs in the reference-based analysis. Phylogenetic trees based on these two analyses were very similar. A total of 57 species-specific SNP markers were found among the samples analysed of the 10 tilapia species. Another set of 62 species-specific SNP markers was identified from a subset of four species which have often been involved in hybridisation in aquaculture: 13 for Oreochromis niloticus, 23 for O. aureus, 12 for O. mossambicus and 14 for O. u. hornorum. A panel of 24 SNPs was selected to distinguish among these four species and validated using 91 individuals. Larger numbers of SNP markers were found that could distinguish between the pairs of species within this subset. This technique offers potential for the investigation of hybridisation and introgression among tilapia species in aquaculture and in wild populations.

Trypsin gene expression in adults and larvae of tropical gar Atractosteus tropicus

2019 ◽  
Vol 46 (1) ◽  
pp. 145-155
Author(s):  
Kristal de M. Jesús-De la Cruz ◽  
Ángela Ávila-Fernández ◽  
Emyr Saúl Peña-Marín ◽  
Luis Daniel Jiménez-Martínez ◽  
Dariel Tovar-Ramírez ◽  
...  
Keyword(s):  
Gene Expression ◽  
Tropical Gar ◽  
Atractosteus Tropicus

Digestive enzymatic activity on Tropical gar (Atractosteus tropicus) larvae fed different diets

2011 ◽  
Vol 38 (3) ◽  
pp. 679-691 ◽  
Author(s):  
Carlos Aguilera ◽  
Roberto Mendoza ◽  
Israel Iracheta ◽  
Gabriel Marquez
Keyword(s):  
Enzymatic Activity ◽  
Tropical Gar ◽  
Atractosteus Tropicus

scholarly journals Sequencing, De Novo Assembly, and Annotation of the Transcriptome of the Endangered Freshwater Pearl Bivalve, Cristaria plicata, Provides Novel Insights into Functional Genes and Marker Discovery

PLoS ONE ◽  
2016 ◽  
Vol 11 (2) ◽  
pp. e0148622 ◽  
Author(s):  
Bharat Bhusan Patnaik ◽  
Tae Hun Wang ◽  
Se Won Kang ◽  
Hee-Ju Hwang ◽  
So Young Park ◽  
...  
Keyword(s):  
De Novo Assembly ◽  
De Novo ◽  
Functional Genes ◽  
Marker Discovery

scholarly journals Properties and developmental regulation of an α-d-galactosidase from Dictyostelium discoideum

1976 ◽  
Vol 158 (2) ◽  
pp. 409-417 ◽  
Author(s):  
D C Kilpatrick ◽  
J L Stirling
Keyword(s):  
Protein Synthesis ◽  
Dictyostelium Discoideum ◽  
Early Development ◽  
Subcellular Distribution ◽  
De Novo ◽  
Specific Activity ◽  
Soluble Fraction ◽  
Developmental Regulation ◽  
Cellular Slime Mould ◽  
Cellular Slime

An alpha-D-galactosidase was detected in cells of the cellular slime mould, Dictyostelium discoideum, at all stages of development. Its specific activity was highest during early development (interphase), and this accumulation of enzyme appears to require protein synthesis de novo. Its subcellular distribution differs from that of other D. discoideum glycosidases, since most activity was recovered in the soluble fraction. No evidence was obtained for more than one isoenzymic form after subjection of extracts to electrophoresis and various chromatographic procedures. It is excreted from the cell during development, but no evidence was found for an extracellular function for the enzyme.

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