scholarly journals Differing Growth Responses of Major Phylogenetic Groups of Marine Bacteria to Natural Phytoplankton Blooms in the Western North Pacific Ocean

2011 ◽  
Vol 77 (12) ◽  
pp. 4055-4065 ◽  
Author(s):  
Yuya Tada ◽  
Akito Taniguchi ◽  
Ippei Nagao ◽  
Takeshi Miki ◽  
Mitsuo Uematsu ◽  
...  
Keyword(s):  
Organic Matter ◽  
Bacterial Community ◽  
North Pacific ◽  
Bacterial Production ◽  
Western North Pacific ◽  
Bacterial Abundance ◽  
North Pacific Ocean ◽  
Growth Potential ◽  
Phytoplankton Blooms ◽  
Content Type

ABSTRACTGrowth and productivity of phytoplankton substantially change organic matter characteristics, which affect bacterial abundance, productivity, and community structure in aquatic ecosystems. We analyzed bacterial community structures and measured activities inside and outside phytoplankton blooms in the western North Pacific Ocean by using bromodeoxyuridine immunocytochemistry and fluorescencein situhybridization (BIC-FISH).Roseobacter/Rhodobacter, SAR11,Betaproteobacteria,Alteromonas, SAR86, andBacteroidetesresponded differently to changes in organic matter supply.Roseobacter/Rhodobacterbacteria remained widespread, active, and proliferating despite large fluctuations in organic matter and chlorophylla(Chl-a) concentrations. The relative contribution ofBacteroidetesto total bacterial production was consistently high. Furthermore, we documented the unexpectedly large contribution ofAlteromonasto total bacterial production in the bloom. Bacterial abundance, productivity, and growth potential (the proportion of growing cells in a population) were significantly correlated with Chl-aand particulate organic carbon concentrations. Canonical correspondence analysis showed that organic matter supply was critical for determining bacterial community structures. The growth potential of each bacterial group as a function of Chl-aconcentration showed a bell-shaped distribution, indicating an optimal organic matter concentration to promote growth. The growth ofAlteromonasandBetaproteobacteriawas especially strongly correlated with organic matter supply. These data elucidate the distinctive ecological role of major bacterial taxa in organic matter cycling during open ocean phytoplankton blooms.

scholarly journals Draft Genome Sequence of Rubricoccus marinus SG-29T, a Marine Bacterium within the Family Rhodothermaceae, Which Contains Two Different Rhodopsin Genes

2017 ◽  
Vol 5 (38) ◽  
Author(s):  
Yu Nakajima ◽  
Susumu Yoshizawa ◽  
Sanghwa Park ◽  
Yohei Kumagai ◽  
Shu-Kuan Wong ◽  
...  
Keyword(s):  
Genome Sequence ◽  
North Pacific ◽  
Western North Pacific ◽  
Marine Bacterium ◽  
North Pacific Ocean ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
The Family ◽  
Different Types

ABSTRACT Here, we report the draft genome sequence of Rubricoccus marinus SG-29T, a bacterium isolated from the western North Pacific Ocean. R. marinus SG-29T possesses two different types of rhodopsin genes and belongs to the family Rhodothermaceae, with which halophilic, thermophilic, and marine bacteria are associated.

scholarly journals Mesoscale Features Associated with Tropical Cyclone Formations in the Western North Pacific

2008 ◽  
Vol 136 (6) ◽  
pp. 2006-2022 ◽  
Author(s):  
Cheng-Shang Lee ◽  
Kevin K. W. Cheung ◽  
Jenny S. N. Hui ◽  
Russell L. Elsberry
Keyword(s):  
Tropical Cyclone ◽  
North Pacific ◽  
Western North Pacific ◽  
Large Scale ◽  
North Pacific Ocean ◽  
Deep Convection ◽  
Mesoscale Convective System ◽  
Convective System ◽  
Synoptic Patterns ◽  
The Mean

Abstract The mesoscale features of 124 tropical cyclone formations in the western North Pacific Ocean during 1999–2004 are investigated through large-scale analyses, satellite infrared brightness temperature (TB), and Quick Scatterometer (QuikSCAT) oceanic wind data. Based on low-level wind flow and surge direction, the formation cases are classified into six synoptic patterns: easterly wave (EW), northeasterly flow (NE), coexistence of northeasterly and southwesterly flow (NE–SW), southwesterly flow (SW), monsoon confluence (MC), and monsoon shear (MS). Then the general convection characteristics and mesoscale convective system (MCS) activities associated with these formation cases are studied under this classification scheme. Convection processes in the EW cases are distinguished from the monsoon-related formations in that the convection is less deep and closer to the formation center. Five characteristic temporal evolutions of the deep convection are identified: (i) single convection event, (ii) two convection events, (iii) three convection events, (iv) gradual decrease in TB, and (v) fluctuating TB, or a slight increase in TB before formation. Although no dominant temporal evolution differentiates cases in the six synoptic patterns, evolutions ii and iii seem to be the common routes taken by the monsoon-related formations. The overall percentage of cases with MCS activity at multiple times is 63%, and in 35% of cases more than one MCS coexisted. Most of the MC and MS cases develop multiple MCSs that lead to several episodes of deep convection. These two patterns have the highest percentage of coexisting MCSs such that potential interaction between these systems may play a role in the formation process. The MCSs in the monsoon-related formations are distributed around the center, except in the NE–SW cases in which clustering of MCSs is found about 100–200 km east of the center during the 12 h before formation. On average only one MCS occurs during an EW formation, whereas the mean value is around two for the other monsoon-related patterns. Both the mean lifetime and time of first appearance of MCS in EW are much shorter than those developed in other synoptic patterns, which indicates that the overall formation evolution in the EW case is faster. Moreover, this MCS is most likely to be found within 100 km east of the center 12 h before formation. The implications of these results to internal mechanisms of tropical cyclone formation are discussed in light of other recent mesoscale studies.

scholarly journals 18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacific

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Tsuyoshi Watanabe ◽  
Satoshi Nagai ◽  
Yoko Kawakami ◽  
Taiga Asakura ◽  
Jun Kikuchi ◽  
...  
Keyword(s):  
Organic Matter ◽  
Particulate Organic Matter ◽  
North Pacific ◽  
Western North Pacific ◽  
18S Rrna ◽  
18S Rrna Gene ◽  
Gut Contents ◽  
Rrna Gene ◽  
Marine Snow ◽  
Chlorophyll Maximum

AbstractEel larvae apparently feed on marine snow, but many aspects of their feeding ecology remain unknown. The eukaryotic 18S rRNA gene sequence compositions in the gut contents of four taxa of anguilliform eel larvae were compared with the sequence compositions of vertically sampled seawater particulate organic matter (POM) in the oligotrophic western North Pacific Ocean. Both gut contents and POM were mainly composed of dinoflagellates as well as other phytoplankton (cryptophytes and diatoms) and zooplankton (ciliophoran and copepod) sequences. Gut contents also contained cryptophyte and ciliophoran genera and a few other taxa. Dinoflagellates (family Gymnodiniaceae) may be an important food source and these phytoplankton were predominant in gut contents and POM as evidenced by DNA analysis and phytoplankton cell counting. The compositions of the gut contents were not specific to the species of eel larvae or the different sampling areas, and they were most similar to POM at the chlorophyll maximum in the upper part of the thermocline (mean depth: 112 m). Our results are consistent with eel larvae feeding on marine snow at a low trophic level, and feeding may frequently occur in the chlorophyll maximum in the western North Pacific.

Satellite-Derived Tropical Cyclone Intensity in the North Pacific Ocean Using the Deviation-Angle Variance Technique

2014 ◽  
Vol 29 (3) ◽  
pp. 505-516 ◽  
Author(s):  
Elizabeth A. Ritchie ◽  
Kimberly M. Wood ◽  
Oscar G. Rodríguez-Herrera ◽  
Miguel F. Piñeros ◽  
J. Scott Tyo
Keyword(s):  
Tropical Cyclone ◽  
North Atlantic ◽  
North Pacific ◽  
Western North Pacific ◽  
North Pacific Ocean ◽  
Deviation Angle ◽  
Intensity Estimation ◽  
The North ◽  
The North Atlantic ◽  
The North Pacific

Abstract The deviation-angle variance technique (DAV-T), which was introduced in the North Atlantic basin for tropical cyclone (TC) intensity estimation, is adapted for use in the North Pacific Ocean using the “best-track center” application of the DAV. The adaptations include changes in preprocessing for different data sources [Geostationary Operational Environmental Satellite-East (GOES-E) in the Atlantic, stitched GOES-E–Geostationary Operational Environmental Satellite-West (GOES-W) in the eastern North Pacific, and the Multifunctional Transport Satellite (MTSAT) in the western North Pacific], and retraining the algorithm parameters for different basins. Over the 2007–11 period, DAV-T intensity estimation in the western North Pacific results in a root-mean-square intensity error (RMSE, as measured by the maximum sustained surface winds) of 14.3 kt (1 kt ≈ 0.51 m s−1) when compared to the Joint Typhoon Warning Center best track, utilizing all TCs to train and test the algorithm. The RMSE obtained when testing on an individual year and training with the remaining set lies between 12.9 and 15.1 kt. In the eastern North Pacific the DAV-T produces an RMSE of 13.4 kt utilizing all TCs in 2005–11 when compared with the National Hurricane Center best track. The RMSE for individual years lies between 9.4 and 16.9 kt. The complex environment in the western North Pacific led to an extension to the DAV-T that includes two different radii of computation, producing a parametric surface that relates TC axisymmetry to intensity. The overall RMSE is reduced by an average of 1.3 kt in the western North Pacific and 0.8 kt in the eastern North Pacific. These results for the North Pacific are comparable with previously reported results using the DAV for the North Atlantic basin.

scholarly journals Observations of Upper-Tropospheric Influence on a Monsoon Trough over the Western North Pacific

2014 ◽  
Vol 142 (4) ◽  
pp. 1472-1488 ◽  
Author(s):  
Biao Geng ◽  
Kunio Yoneyama ◽  
Ryuichi Shirooka
Keyword(s):  
North Pacific ◽  
Western North Pacific ◽  
North Pacific Ocean ◽  
Low Pressure ◽  
Monsoon Trough ◽  
Pressure Cell ◽  
Intensive Observations ◽  
Upper Level ◽  
Synoptic Observations ◽  
Eastern Edge

Abstract This study examined the synoptic evolution and internal structure of a monsoon trough in association with the deep equatorward intrusion of a midlatitude upper trough in the western North Pacific Ocean in June 2008. The study was based on data from routine synoptic observations and intensive observations conducted on board the research vessel Mirai at 12°N, 135°E. The monsoon trough was first observed to extend southeastward from the center of a tropical depression. It then moved northward, with its eastern edge moving faster and approaching a surface low pressure cell induced by the upper trough. The distinct northward migration caused the monsoon trough to become oriented from the southwest to the northeast. The monsoon trough merged with the surface low pressure cell and extended broadly northeastward. The passage of the monsoon trough over the Mirai was accompanied by lower pressure, higher air and sea surface temperature, and minimal rainfall. The monsoon trough extended upward to nearly 500 hPa and sloped southward with height. It was overlain by northwesterly winds, negative geopotential height and temperature anomalies, and extremely dry air in the upper troposphere. Precipitation systems were weak and scattered near the monsoon trough but were intense and extensive south of the surface monsoon trough, where intense low-level convergence and upper-level divergence caused deep and vigorous upward motion. It appears that the upper trough exerted important impacts on the development of both the monsoon trough and associated precipitation, which are discussed according to the observational results.

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