scholarly journals Complete Genome Sequences of Two Hydrangea Ringspot Virus Isolates from Japan

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Akira Yusa ◽  
Nozomu Iwabuchi ◽  
Hiroaki Koinuma ◽  
Takuya Keima ◽  
Yutaro Neriya ◽  
...  
Keyword(s):  
Complete Genome ◽  
Rna Virus ◽  
Nucleotide Sequences ◽  
Ringspot Virus ◽  
Genomic Sequences ◽  
Genome Sequences ◽  
Hydrangea Macrophylla ◽  
Hydrangea Ringspot Virus ◽  
Virus Isolates

Hydrangea ringspot virus (HdRSV) is a plant RNA virus, naturally infecting Hydrangea macrophylla . Here, we report the first genomic sequences of two HdRSV isolates from hydrangea plants in Japan. The overall nucleotide sequences of these Japanese isolates were 96.0 to 96.3% identical to those of known European isolates.

scholarly journals Complete Genome Sequences of Chikungunya Viruses Isolated from Plasma Specimens Collected from Haitians in 2014

2017 ◽  
Vol 5 (15) ◽  
Author(s):  
Sarah K. White ◽  
J. Glenn Morris ◽  
Maha A. Elbadry ◽  
Valery Madsen Beau De Rochars ◽  
Bernard A. Okech ◽  
...  
Keyword(s):  
Human Plasma ◽  
Complete Genome ◽  
Chikungunya Virus ◽  
Phylogenetic Analyses ◽  
Genomic Sequences ◽  
Genome Sequences ◽  
Chikungunya Fever ◽  
Asian Lineage ◽  
Virus Isolates

ABSTRACT Ten chikungunya virus isolates from human plasma collected in Haiti from May to August 2014, in the midst of a chikungunya fever outbreak, were fully sequenced. The resulting genomic sequences are nearly identical, and phylogenetic analyses indicate they belong to the Asian lineage of the virus.

scholarly journals Complete Genome Sequences of Three Tomato Aspermy Virus Isolates in Japan

2018 ◽  
Vol 6 (22) ◽  
Author(s):  
Sota Inoue ◽  
Misato Tamura ◽  
Masashi Ugaki ◽  
Masashi Suzuki
Keyword(s):  
Complete Genome ◽  
Nucleotide Sequences ◽  
Genome Sequences ◽  
Genomic Rnas ◽  
Content Type ◽  
Tomato Aspermy Virus ◽  
Virus Isolates

ABSTRACT We report here the first complete nucleotide sequences of genomic RNAs of three Tomato aspermy virus (TAV) isolates in Japan. Analysis of these sequences showed that they have unique characteristics in RNAs 2 and 3. The Japanese isolates are similar to each other compared to other TAVs.

scholarly journals Creation of a new genus in the family Secoviridae substantiated by sequence variation of newly identified strawberry latent ringspot virus isolates

2019 ◽  
Vol 165 (1) ◽  
pp. 21-31 ◽  
Author(s):  
A. M. Dullemans ◽  
M. Botermans ◽  
M. J. D. de Kock ◽  
C. E. de Krom ◽  
T. A. J. van der Lee ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Amino Acid ◽  
Complete Genome ◽  
New Genus ◽  
Sequence Data ◽  
Amino Acid Sequences ◽  
Ringspot Virus ◽  
Genome Sequences ◽  
The Family ◽  
Virus Isolates

Abstract To obtain insight into the sequence diversity of strawberry latent ringspot virus (SLRSV), isolates from collections and diagnostic samples were sequenced by high-throughput sequencing. For five SLRSV isolates, the complete genome sequences were determined, and for 18 other isolates nearly complete genome sequences were determined. The sequence data were analysed in relation to sequences of SLRSV and related virus isolates available in the NCBI GenBank database. The genome sequences were annotated, and sequences of the protease-polymerase (Pro-Pol) region and coat proteins (CPs) (large and small CP together) were used for phylogenetic analysis. The amino acid sequences of the Pro-Pol region were very similar, whereas the nucleotide sequences of this region were more variable. The amino acid sequences of the CPs were less similar, which was corroborated by the results of a serological comparison performed using antisera raised against different isolates of SLRSV. Based on these results, we propose that SLRSV and related unassigned viruses be assigned to a new genus within the family Secoviridae, named “Stralarivirus”. Based on the phylogenetic analysis, this genus should include at least three viruses, i.e., SLRSV-A, SLRSV-B and lychnis mottle virus. The newly generated sequence data provide a basis for designing molecular tests to screen for SLRSV.

scholarly journals Genome Sequences of Three Ross River Virus Isolates Obtained from the Australian Defence Force

2019 ◽  
Vol 8 (14) ◽  
Author(s):  
Wenjun Liu ◽  
Joanne Kizu ◽  
Luke Le Grand ◽  
Ian Mitchell ◽  
Penelope J. Gauci ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Complete Genome ◽  
Nucleotide Sequences ◽  
Ross River Virus ◽  
Genome Sequences ◽  
Australian Defence Force ◽  
Virus Isolates

The complete genome sequences of three Ross River virus (RRV) isolates from infected Australian Defence Force (ADF) personnel and from mosquitoes collected in ADF training areas were determined. Phylogenetic analysis in comparison with all available complete RRV nucleotide sequences from GenBank split these three RRV isolates into two distinct sublineages.

scholarly journals Complete Genome Sequences of Two Sweet Potato Chlorotic Stunt Virus Isolates from China

2013 ◽  
Vol 1 (3) ◽  
Author(s):  
Y. Qin ◽  
Z. Zhang ◽  
Q. Qiao ◽  
D. Zhang ◽  
Y. Tian ◽  
...  
Keyword(s):  
Sweet Potato ◽  
Complete Genome ◽  
Genome Sequences ◽  
Virus Isolates

scholarly journals Complete Genome Sequences and Evolutionary Analysis of Cucurbit aphid-borne yellows virus Isolates from Melon in Korea

2018 ◽  
Vol 34 (6) ◽  
pp. 532-543 ◽  
Author(s):  
Hae-Ryun Kwak ◽  
Hee Ju Lee ◽  
Eun-A Kim ◽  
Jang-Kyun Seo ◽  
Chang-Seok Kim ◽  
...  
Keyword(s):  
Complete Genome ◽  
Evolutionary Analysis ◽  
Genome Sequences ◽  
Virus Isolates

scholarly journals Near-Complete Genome Sequences of Vesicular Stomatitis Virus Isolates from the 2020 Outbreak in Kansas

2021 ◽  
Vol 10 (7) ◽  
Author(s):  
Tyler Doerksen ◽  
Edward Bird ◽  
Jamie Henningson ◽  
Rachel Palinski
Keyword(s):  
United States ◽  
Vesicular Stomatitis Virus ◽  
Complete Genome ◽  
The United States ◽  
Genome Sequences ◽  
Vesicular Stomatitis ◽  
Virus Isolates

ABSTRACT Here, we report the near-complete genome sequences of vesicular stomatitis virus (VSV) serotype Indiana isolates from the 2020 U.S. outbreak. The sequences were obtained from swabs collected from Kansas horses in July and August. The four genome sequences help improve our understanding of VSV outbreak dynamics in the United States.

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