scholarly journals Complete Genome Sequence of a Novel Human Gammapapillomavirus Isolated from Skin

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Rosario N. Brancaccio ◽  
Alexis Robitaille ◽  
Sankhadeep Dutta ◽  
Dana E. Rollison ◽  
Nicole Fischer ◽  
...  
Keyword(s):  
Human Papillomavirus ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frame ◽  
Next Generation ◽  
Degenerate Pcr ◽  
Reading Frame ◽  
Generation Sequencing

ABSTRACT A novel human papillomavirus (HPV ICB1) was fully characterized from a skin swab by using a sensitive degenerate PCR protocol combined with next-generation sequencing. The L1 open reading frame of HPV ICB1 shares 70.54% nucleotide homology with its closest relative, HPV164, and thus constitutes a novel human gammapapillomavirus.

scholarly journals Complete Genome Sequence of a Novel Human Gammapapillomavirus Isolated from a Cervical Swab in Luxembourg

2018 ◽  
Vol 6 (11) ◽  
Author(s):  
Ardashel Latsuzbaia ◽  
Marc Arbyn ◽  
Sankhadeep Dutta ◽  
Marc Fischer ◽  
Tarik Gheit ◽  
...  
Keyword(s):  
Human Papillomavirus ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frame ◽  
Reading Frame ◽  
Cervical Swab ◽  
Generation Sequencing ◽  
Swab Specimen

ABSTRACT A novel human papillomavirus genotype was detected in a cervical swab specimen by next-generation sequencing after rolling circular amplification. It was fully cloned and characterized. The L1 open reading frame showed 77% nucleotide similarity with the closest genotype, HPV101, belonging to the gamma-6 species.

scholarly journals Complete Genome Sequence of a Novel Human Betapapillomavirus Isolated from a Skin Sample

2017 ◽  
Vol 5 (13) ◽  
Author(s):  
Sankhadeep Dutta ◽  
Alexis Robitaille ◽  
Dana E. Rollison ◽  
Massimo Tommasino ◽  
Tarik Gheit
Keyword(s):  
Human Papillomavirus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genetic Characterization ◽  
Open Reading Frame ◽  
Skin Sample ◽  
Reading Frame ◽  
Beta 2

ABSTRACT We report the genetic characterization of a new papillomavirus (HPV_MTS1) isolated and fully cloned from a skin swab. The L1 open reading frame of HPV_MTS1 was 85% identical to its closest human papillomavirus (HPV) type 80, which belongs to the species beta-2 of the genus Betapapillomavirus, hence qualifying it as a new HPV type.

scholarly journals Complete Genome Sequence of an Emergent Recombinant GII.P16-GII.2 Norovirus Strain Associated with an Epidemic Spread in the Winter of 2016-2017 in Hong Kong, China

2017 ◽  
Vol 5 (20) ◽  
Author(s):  
Martin C. W. Chan ◽  
Kirsty Kwok ◽  
Tin-Nok Hung ◽  
Lok-Yi Chan ◽  
Paul K. S. Chan
Keyword(s):  
Hong Kong ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nucleotide Identity ◽  
Epidemic Spread ◽  
Next Generation ◽  
Generation Sequencing

ABSTRACT A new recombinant norovirus, GII.P16-GII.2, emerged in the winter of 2016-2017. Here, we report the complete genome of this strain (Hu/GII/HK/2016/GII.P16-GII.2/CUHK-NS-1082), which was collected from a patient hospitalized with gastroenteritis in September 2016 in Hong Kong, China, and sequenced using next-generation sequencing. This genome had a 95.2% nucleotide identity to the closest sequence in GenBank.

scholarly journals Complete Genome Sequence of Ornithogalum Mosaic Virus Infecting Gladiolus spp. in South Korea

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Sang-Yun Cho ◽  
Seungmo Lim ◽  
Hongsup Kim ◽  
Seung-In Yi ◽  
Jae Sun Moon
Keyword(s):  
Next Generation Sequencing ◽  
South Korea ◽  
Mosaic Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Sequence Information ◽  
Next Generation ◽  
Generation Sequencing

We report here the first complete genome sequence of Ornithogalum mosaic virus (OrMV) isolated from Taean, South Korea, in 2011, which was obtained by next-generation sequencing and Sanger sequencing. The sequence information provided here may serve as a potential reference for other OrMV isolates.

scholarly journals Next-Generation Sequencing Reveals the First Complete Genome Sequence of Cowpea aphid-borne mosaic virus from Uganda

2018 ◽  
Vol 6 (3) ◽  
Author(s):  
E. K. Mbeyagala ◽  
P. Tukamuhabwa ◽  
J. Bisikwa ◽  
T. Holton ◽  
S. B. Mukasa
Keyword(s):  
Next Generation Sequencing ◽  
Mosaic Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Indian Isolate ◽  
Next Generation ◽  
Genome Sequences ◽  
Cowpea Aphid ◽  
Generation Sequencing

ABSTRACT We present here the first complete genome sequence of Cowpea aphid-borne mosaic virus (CABMV) isolated from cowpea in Uganda and compare it with five CABMV complete genome sequences from Brazil (2), India (2), and Zimbabwe (1). It most resembled the genomes of two Brazilian isolates (MG-Avr and BR1) and one Indian isolate (RR3).

scholarly journals Novel Circo-Like Virus Detected in a Croatian Bat Population

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Ivana Šimić ◽  
Tomaž Mark Zorec ◽  
Nina Krešić ◽  
Mario Poljak ◽  
Tomislav Bedeković ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Viral Metagenomics ◽  
Next Generation ◽  
Content Type ◽  
Bat Rabies ◽  
Generation Sequencing ◽  
Metagenomics Analysis

Viral metagenomics analysis of samples from bats has been carried out as part of bat rabies surveillance in Croatia. Here, we report the complete genome sequence of a novel circo-like virus isolated from a sample of Miniopterus schreibersii bat guano determined by Illumina next-generation sequencing.

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