scholarly journals Reconstruction of a Nearly Complete Pseudomonas Draft Genome Sequence from a Coalbed Methane-Produced Water Metagenome

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Daniel E. Ross ◽  
Djuna Gulliver
Keyword(s):  
Nitrogen Fixation ◽  
Microbial Community ◽  
Genome Sequence ◽  
Coalbed Methane ◽  
Produced Water ◽  
Draft Genome ◽  
Pseudomonas Stutzeri ◽  
Draft Genome Sequence ◽  
Degradation Pathways ◽  
Naphthalene Degradation

The draft genome sequence of Pseudomonas stutzeri strain K35 was separated from a metagenome derived from a produced water microbial community of a coalbed methane well. The genome encodes a complete nitrogen fixation pathway and the upper and lower naphthalene degradation pathways.

scholarly journals Draft Genome Sequence of Pseudomonas stutzeri ODKF13, Isolated from Farmland Soil in Alvin, Texas

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Rupa Iyer ◽  
Ashish Damania
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Draft Genome ◽  
Pseudomonas Stutzeri ◽  
Draft Genome Sequence ◽  
Naphthalene Degradation ◽  
Farmland Soil

Pseudomonas stutzeri ODKF13 is a bacterial microorganism isolated from farmland soil in Alvin, Texas. This strain is notable for its naphthalene degradation and nitrogen fixation pathways and for its characterization as an organophosphate degrader of phosphotriester and phosphorothioate insecticides.

scholarly journals Draft Genome Sequence of Thermophilic Halotolerant Aeribacillus pallidus TD1, Isolated from Tao Dam Hot Spring, Thailand

2019 ◽  
Vol 8 (17) ◽  
Author(s):  
Wariya Yamprayoonswat ◽  
Satapanawat Sittihan ◽  
Watthanachai Jumpathong ◽  
Montri Yasawong
Keyword(s):  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
Naphthalene Dioxygenase ◽  
Content Type ◽  
Naphthalene Degradation ◽  
Key Enzyme

Aeribacillus pallidus TD1 is a thermophilic bacterium isolated from a hot spring in Thailand. The genome sequence of A. pallidus TD1 contains a gene-encoded naphthalene dioxygenase, which is a key enzyme for naphthalene degradation.

scholarly journals Whole-Genome Sequence of Brevibacillus borstelensis SDM, Isolated from a Sorghum-Adapted Microbial Community

2020 ◽  
Vol 9 (48) ◽  
Author(s):  
Martina Aulitto ◽  
Lauren M. Tom ◽  
Javier A. Ceja-Navarro ◽  
Blake A. Simmons ◽  
Steven W. Singer
Keyword(s):  
Microbial Community ◽  
Genome Sequence ◽  
Environmental Samples ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Compost Sample

ABSTRACT The isolation of novel microbes from environmental samples continues to be a key strategy for the discovery of new metabolic capacities for the degradation and transformation of lignocellulose. We report the draft genome sequence of a new strain of Brevibacillus borstelensis isolated from a sorghum-adapted microbial community derived from a compost sample.

scholarly journals Genome Sequence of Pseudomonas sp. HUK17, Isolated from Hexachlorocyclohexane-Contaminated Soil

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Cyrielle Gasc ◽  
Jean-Yves Richard ◽  
Pierre Peyret
Keyword(s):  
Genome Sequence ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Degradation Pathways ◽  
Pseudomonas Sp ◽  
Pesticide Degradation

Pseudomonas sp. HUK17 has been isolated from hexachlorocyclohexane (HCH) long-term contaminated soil. The genome of strain HUK17 was sequenced to elucidate its adaptation toward HCH and to evaluate the presence of pesticide degradation pathways. Here, we report the annotated draft genome sequence (~2.6 Mbp) of this strain.

scholarly journals Draft Genome Sequence of Tepidimonas taiwanensis Strain MB2, a Chemolithotrophic Thermophile Isolated from a Hot Spring in Central India

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Darshan B. Dhakan ◽  
Rituja Saxena ◽  
Nikhil Chaudhary ◽  
Vineet K. Sharma
Keyword(s):  
Nitrogen Fixation ◽  
Organic Acids ◽  
Genome Sequence ◽  
Hot Spring ◽  
Sulfur Metabolism ◽  
Draft Genome ◽  
Central India ◽  
Draft Genome Sequence ◽  
Ammonia Metabolism

Tepidimonas taiwanensis strain MB2 is a thermophile isolated from a hot spring located in central India. Here, we report a 28,49,160 bp draft genome sequence of Tepidimonas taiwanensis MB2. The genome shows properties of sulfur metabolism, nitrogen fixation, ammonia metabolism, assimilation of organic acids, and a wide variety of proteases.

scholarly journals Draft Genome Sequence of the Toluene-Degrading Pseudomonas stutzeri Strain ST-9

2015 ◽  
Vol 3 (3) ◽  
Author(s):  
Margarita Gomila ◽  
Antonio Busquets ◽  
Elena García-Valdés ◽  
Esti Michael ◽  
Rivka Cahan ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Pseudomonas Stutzeri ◽  
Draft Genome Sequence

scholarly journals Draft Genome Sequence ofMethanohalophilus mahiiStrain DAL1 Reconstructed from a Hydraulic Fracturing-Produced Water Metagenome

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Daniel Lipus ◽  
Amit Vikram ◽  
Daniel E. Ross ◽  
Kyle Bibby
Keyword(s):  
Hydraulic Fracturing ◽  
Genome Sequence ◽  
Genome Annotation ◽  
Produced Water ◽  
Marcellus Shale ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Methanohalophilus Mahii

We report here the 1,882,100-bp draft genome sequence ofMethanohalophilus mahiistrain DAL1, recovered from Marcellus Shale hydraulic fracturing-produced water using metagenomic contig binning. Genome annotation revealed several key methanogenesis genes and provides valuable information on archaeal activity associated with hydraulic fracturing-produced water environments.

scholarly journals Draft Genome Sequence of Burkholderia vietnamiensis Strain RS1, a Nitrogen-Fixing Endophyte Isolated from Sweet Potato

2018 ◽  
Vol 7 (3) ◽  
Author(s):  
Rina Shinjo ◽  
Kazuma Uesaka ◽  
Kunio Ihara ◽  
Shunsuke Sakazaki ◽  
Katsuya Yano ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Sweet Potato ◽  
Genome Sequence ◽  
Draft Genome ◽  
Endophytic Bacterium ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Burkholderia Vietnamiensis ◽  
Tuberous Roots

Burkholderia vietnamiensis strain RS1 is an endophytic bacterium with nitrogen-fixing ability that was isolated from tuberous roots of sweet potato. Here, we present its draft genome of 6,542,727 bases that contains a cluster of genes associated with nitrogen fixation.

scholarly journals Draft Genome Sequence of Pseudomonas stutzeri Strain KMS 55, an Endophytic Diazotroph Isolated from Rice Roots

2017 ◽  
Vol 5 (40) ◽  
Author(s):  
Kannepalli Annapurna ◽  
Venkadasamy Govindasamy ◽  
Meenakshi Sharma ◽  
Yuvika Rajrana ◽  
Karivaradharajan Swarnalakshmi ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Pseudomonas Stutzeri ◽  
Single Copy ◽  
23S Rrna ◽  
Protein Coding ◽  
Content Type ◽  
A Genome

ABSTRACT Pseudomonas stutzeri strain KMS 55 (MTCC 12703) is an isolate from the root tissues of rice (Oryza sativa L.) that displays a high biological nitrogen fixation ability. Here, we report the complete genome sequence of this strain, which contains 4,637,820 bp, 4,289 protein-coding genes, 5,006 promoter sequences, 62 tRNAs, a single copy of 5S-16S-23S rRNA, and a genome average GC content of 51.18%. Analysis of the ~4.64-Mb genome sequence will give support to increased understanding of the genetic determinants of host range, endophytic colonization behavior, endophytic nitrogen fixation, and other plant-beneficial roles of Pseudomonas stutzeri.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii Strain SEMIA 938, Used in Commercial Inoculants for Lupinus spp. in Brazil

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Mariangela Hungria ◽  
Jakeline Renata Marçon Delamuta ◽  
Renan Augusto Ribeiro ◽  
Marco Antonio Nogueira
Keyword(s):  
Nitrogen Fixation ◽  
Genome Sequence ◽  
Draft Genome ◽  
High Capacity ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Nodulation Genes ◽  
Bradyrhizobium Elkanii ◽  
Commercial Inoculants

Due to its high capacity for nitrogen fixation, strain SEMIA 938 is used in commercial inoculants for lupins in Brazil. Its genome was estimated at 8,780,064 bp and indicates that it belongs to the Bradyrhizobium elkanii species, while the analysis of nodulation genes classifies the strain in the symbiovar sojae.

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