scholarly journals Genome Sequence of a Salmonella enterica subsp. enterica Serovar Corvallis Strain Isolated from Human Blood

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Emily L. McCutchen ◽  
Madeline Galac ◽  
Curtis Kapsak ◽  
Steven H. Hinrichs ◽  
Peter C. Iwen ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Human Blood ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
The United States ◽  
Multidrug Resistant ◽  
Content Type ◽  
Avian Populations ◽  
By Products

Salmonella enterica subsp. enterica serovar Corvallis is commonly reported in avian populations and avian by-products. We report the draft genome sequence of a multidrug-resistant S. Corvallis strain (NPHL 15376). To our knowledge, this is the first reported case of this serovar isolated from human blood in the United States.

scholarly journals Draft Genome Sequence of Invasive Salmonella enterica Serovar Cannstatt Harboring mcr-1.1, Isolated from a Fatal Sepsis Case

2021 ◽  
Vol 10 (8) ◽  
Author(s):  
Wantana Paveenkittiporn ◽  
Watcharaporn Kamjumphol ◽  
Anusak Kerdsin
Keyword(s):  
Genome Sequence ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Multidrug Resistant ◽  
Sequence Type ◽  
Whole Genome Sequence ◽  
Content Type ◽  
Fatal Sepsis ◽  
M 14

ABSTRACT Here, we report the whole-genome sequence of multidrug-resistant Salmonella enterica serovar Cannstatt harboring mcr-1.1, isolated from a fatal sepsis case. Genomic analysis revealed that the isolate was sequence type 2390 carrying mcr-1.1, blaCTX-M-14, aac(3)IId, aac(6′)Iaa, floR, qnrS1, sul2, tetA, and tetM. Three Inc plasmids were observed, including the IncX4 plasmid containing mcr-1.1.

scholarly journals Complete Genome Sequence of a Carbapenem-Resistant Escherichia coli Isolate with blaNDM-5 from a Dog in the United States

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Gregory H. Tyson ◽  
Cong Li ◽  
Olgica Ceric ◽  
Renate Reimschuessel ◽  
Stephen Cole ◽  
...  
Keyword(s):  
United States ◽  
Escherichia Coli ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Carbapenem Resistance ◽  
The United States ◽  
Multidrug Resistant ◽  
Content Type ◽  
E Coli

The carbapenem resistance gene bla NDM-5 was identified in an Escherichia coli strain isolated from a dog. We report here the complete genome sequence of this E. coli strain; the bla NDM-5 gene was present on a large IncFII multidrug-resistant plasmid. This is the first bla NDM-5-carrying E. coli strain from an animal in the United States.

scholarly journals Genomic Analysis of Xanthomonas oryzae Isolates from Rice Grown in the United States Reveals Substantial Divergence from Known X. oryzae Pathovars

2011 ◽  
Vol 77 (12) ◽  
pp. 3930-3937 ◽  
Author(s):  
L. R. Triplett ◽  
J. P. Hamilton ◽  
C. R. Buell ◽  
N. A. Tisserat ◽  
V. Verdier ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Xanthomonas Oryzae ◽  
Draft Genome Sequence ◽  
Diagnostic Tools ◽  
Putative Gene ◽  
Content Type ◽  
The U.S

ABSTRACTThe speciesXanthomonas oryzaeis comprised of two designated pathovars, both of which cause economically significant diseases of rice in Asia and Africa. AlthoughX. oryzaeis not considered endemic in the United States, anX. oryzae-like bacterium was isolated from U.S. rice and southern cutgrass in the late 1980s. The U.S. strains were weakly pathogenic and genetically distinct from characterizedX. oryzaepathovars. In the current study, a draft genome sequence from two U.S.Xanthomonasstrains revealed that the U.S. strains form a novel clade within theX. oryzaespecies, distinct from all strains known to cause significant yield loss. Comparative genome analysis revealed several putative gene clusters specific to the U.S. strains and supported previous reports that the U.S. strains lack transcriptional activator-like (TAL) effectors. In addition to phylogenetic and comparative analyses, the genome sequence was used for designing robust U.S. strain-specific primers, demonstrating the usefulness of a draft genome sequence in the rapid development of diagnostic tools.

scholarly journals Draft Genome Sequence of Mycobacterium virginiense Strain GF75, Isolated from the Mud of a Swine Farm in Japan

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Toshihiro Ito ◽  
Fumito Maruyama ◽  
Kotaro Sawai ◽  
Keiko Nozaki ◽  
Keiko Otsu ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence ◽  
Swine Farm ◽  
Content Type

ABSTRACT Mycobacterium virginiense , a newly described species of the Mycobacterium terrae complex, is a cause of tenosynovitis and osteomyelitis in the United States. Here, we report the 4,849,424-bp draft genome sequence of M. virginiense strain GF75, isolated from a mud sample taken from a Japanese swine farm.

scholarly journals Draft Genome Sequence of the Fish Strain Edwardsiella tarda NCIMB 2034

2017 ◽  
Vol 5 (20) ◽  
Author(s):  
Noemí Buján ◽  
Aide Lasa ◽  
Alicia E. Toranzo ◽  
Beatriz Magariños
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Edwardsiella Tarda ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Diseased Fish

ABSTRACT Edwardsiella tarda is an important pathogen for fish. The strain NCIMB 2034, obtained from the National Collection of Industrial Food and Marine Bacteria, was isolated from unknown diseased fish in the United States. The draft genome sequence has 3.79 Mb with a G+C content of 57.1% and >3,340 protein-coding genes.

scholarly journals Identification and Characterization of Multidrug-Resistant Salmonella enterica Serotype Albert Isolates in the United States

2015 ◽  
Vol 59 (5) ◽  
pp. 2774-2779 ◽  
Author(s):  
Jason P. Folster ◽  
Davina Campbell ◽  
Julian Grass ◽  
Allison C. Brown ◽  
Amelia Bicknese ◽  
...  
Keyword(s):  
United States ◽  
Human Disease ◽  
Salmonella Enterica ◽  
The United States ◽  
Multidrug Resistant ◽  
Antimicrobial Treatment ◽  
Human Infection ◽  
Content Type ◽  
Extended Spectrum ◽  
Resistance Plasmids

ABSTRACTSalmonella entericais one of the most common causes of bacterial foodborne illness in the United States. Although mostSalmonellainfections are self-limiting, antimicrobial treatment of invasive salmonellosis is critical. The primary antimicrobial treatment options include fluoroquinolones or extended-spectrum cephalosporins, and resistance to these antimicrobial drugs may complicate treatment. At present,S. entericais composed of more than 2,600 unique serotypes, which vary greatly in geographic prevalence, ecological niche, and the ability to cause human disease, and it is important to understand and mitigate the source of human infection, particularly when antimicrobial resistance is found. In this study, we identified and characterized 19S. entericaserotype Albert isolates collected from food animals, retail meat, and humans in the United States during 2005 to 2013. All five isolates from nonhuman sources were obtained from turkeys or ground turkey, and epidemiologic data suggest poultry consumption or live-poultry exposure as the probable source of infection.S. entericaserotype Albert also appears to be geographically localized to the midwestern United States. All 19 isolates displayed multidrug resistance, including decreased susceptibility to fluoroquinolones and resistance to extended-spectrum cephalosporins. Turkeys are a likely source of multidrug-resistantS. entericaserotype Albert, and circulation of resistance plasmids, as opposed to the expansion of a single resistant strain, is playing a role. More work is needed to understand why these resistance plasmids spread and how their presence and the serotype they reside in contribute to human disease.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain MWU12-2534b, Isolated from a Wild Cranberry Bog in Truro, Massachusetts

2018 ◽  
Vol 7 (13) ◽  
Author(s):  
Ghazal Ebadzadsahrai ◽  
Jonathon Thomson ◽  
Scott Soby
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Draft Genome ◽  
The United States ◽  
Draft Genome Sequence ◽  
Cape Cod ◽  
Pseudomonas Sp ◽  
Content Type ◽  
National Seashore

An unknown Pseudomonas sp. most closely related to Pseudomonas ficuserectae and Pseudomonas protegens was isolated from the rhizospheres of wild cranberry plants in the Cape Cod National Seashore, in the United States.

scholarly journals First Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Worthington Strain CFSAN051295, Isolated from Pistachio

2018 ◽  
Vol 7 (20) ◽  
Author(s):  
Julie Haendiges ◽  
Kuan Yao ◽  
Jesse D. Miller ◽  
Maria Hoffmann
Keyword(s):  
United States ◽  
Dna Sequencing ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Salmonella Enterica ◽  
Complete Genome ◽  
The United States ◽  
Third Generation ◽  
Content Type

We report here, using third-generation, single-molecule, real-time DNA sequencing, the first complete genome sequence of Salmonella enterica serovar Worthington CFSAN051295, isolated from pistachios in the United States. The genome consists of a single 4.9-Mb chromosome.

scholarly journals Human Infections Caused by Clonally Related African Clade (Clade III) Strains of Candida auris in the Greater Houston Region

2020 ◽  
Vol 58 (7) ◽  
Author(s):  
S. Wesley Long ◽  
Matthew Ojeda Saavedra ◽  
Paul A. Christensen ◽  
James M. Musser ◽  
Randall J. Olsen
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Clinical Laboratory ◽  
Draft Genome ◽  
The United States ◽  
Metropolitan Region ◽  
Whole Genome Sequence ◽  
Candida Auris ◽  
Content Type ◽  
African Clade

ABSTRACT Candida auris is a pathogen of considerable public health importance. It was first reported in 2009. Five clades, determined by genomic analysis and named by the distinct regions where they were initially identified, have been defined. We previously completed a draft genome sequence of an African clade (clade III) strain cultured from the urine of a patient hospitalized in the greater Houston metropolitan region (strain LOM). Although initially uncommon, reports of the African clade in the United States have grown to include a recent cluster in California. Here, we describe a second human C. auris infection in the Houston area. Whole-genome sequence analysis demonstrated the Houston patient isolates to be clonally related to one another but distantly related to other African clade organisms recovered in the United States or elsewhere. Infections in these patients were present on admission to the hospital and occurred several months apart. Taken together, the data demonstrate the emergence and persistence of a clonal C. auris population and highlights the importance of routine high-resolution genomic surveillance of emerging human pathogens in the clinical laboratory.

scholarly journals Corrected Genome Sequence of Acinetobacter baumannii Strain AB0057, an Antibiotic-Resistant Isolate from Lineage 1 of Global Clone 1

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Mohammad Hamidian ◽  
Pratap Venepally ◽  
Ruth M. Hall ◽  
Mark D. Adams
Keyword(s):  
United States ◽  
Acinetobacter Baumannii ◽  
Genome Sequence ◽  
The United States ◽  
Targeted Sequencing ◽  
Resistant Isolate ◽  
Illumina Hiseq ◽  
Antibiotic Resistant ◽  
Content Type ◽  
Pcr Products

ABSTRACT Extensively antibiotic-resistant Acinetobacter baumannii isolate AB0057 recovered in the United States in 2004 was one of the first global clone 1 isolates to be completely sequenced. Here, the complete 4.05-Mb genome sequence (chromosome and one plasmid) has been revised using Illumina HiSeq data and targeted sequencing of PCR products.

Sign in / Sign up

Export Citation Format

Share Document