scholarly journals Morphological and Genetic Structure of Two Equivalent Astyanax Species (Characiformes: Characidae) in the Region of Paranaíba Arc

2019 ◽  
Vol 2019 ◽  
pp. 1-8 ◽  
Author(s):  
Renan Rodrigues Rocha ◽  
Rosana de Mesquita Alves ◽  
Rubens Pasa ◽  
Karine Frehner Kavalco

The Astyanax scabripinnis complex is composed of a large number of almost morphological indistinguishable species, including Astyanax paranae and Astyanax rivularis, which exist in the Paraná and São Francisco Basins, respectively, and sometimes are considered subspecies of the A. scabripinnis group or even are cited just as A. scabripinnis. The two river basins are separated by the Upper Paranaíba Arc, likely the main cause of the isolation of these species. We used geometric morphometric tools and DNA analyses of populations of both species to identify the differences between them. Geometric morphometrics separated the two species into distinct groups, whose main difference was the body depth. This is generally related to the speed of the water flow in the river basins. The maximum likelihood phylogram based on mitochondrial DNA sequences formed two main clades: one composed of the population of A. rivularis and the other, of A. paranae. In the haplotype network, the species were similarly separated into two groups from the same ancestral haplotype, with A. rivularis dispersing into two lineages in the São Francisco River Basin. The distribution of A. paranae is a consequence of a secondary dispersion event in the Paraná River Basin. It forms two lineages from a haplotype derived from the ancestor. The vicariant effect of separate basins, through the elevation of the Upper Paranaíba Arc, led to the allopatric speciation of the populations originating the present species. The results of geometric morphometrics and molecular data of the fish show the importance of this geological event in the biogeography and evolutionary history of the ichthyofauna of the region and indicate that the isolation of these species seems to be effective.

2019 ◽  
Vol 42 (1) ◽  
pp. 75-100 ◽  
Author(s):  
C.G. Boluda ◽  
V.J. Rico ◽  
P.K. Divakar ◽  
O. Nadyeina ◽  
L. Myllys ◽  
...  

In many lichen-forming fungi, molecular phylogenetic analyses lead to the discovery of cryptic species within traditional morphospecies. However, in some cases, molecular sequence data also questions the separation of phenotypically characterised species. Here we apply an integrative taxonomy approach – including morphological, chemical, molecular, and distributional characters – to re-assess species boundaries in a traditionally speciose group of hair lichens, Bryoria sect. Implexae. We sampled multilocus sequence and microsatellite data from 142 specimens from a broad intercontinental distribution. Molecular data included DNA sequences of the standard fungal markers ITS, IGS, GAPDH, two newly tested loci (FRBi15 and FRBi16), and SSR frequencies from 18 microsatellite markers. Datasets were analysed with Bayesian and maximum likelihood phylogenetic reconstruction, phenogram reconstruction, STRUCTURE Bayesian clustering, principal coordinate analysis, haplotype network, and several different species delimitation analyses (ABGD, PTP, GMYC, and DISSECT). Additionally, past population demography and divergence times are estimated. The different approaches to species recognition do not support the monophyly of the 11 currently accepted morphospecies, and rather suggest the reduction of these to four phylogenetic species. Moreover, three of these are relatively recent in origin and cryptic, including phenotypically and chemically variable specimens. Issues regarding the integration of an evolutionary perspective into taxonomic conclusions in species complexes, which have undergone recent diversification, are discussed. The four accepted species, all epitypified by sequenced material, are Bryoria fuscescens, B. glabra, B. kockiana, and B. pseudofuscescens. Ten species rank names are reduced to synonymy. In the absence of molecular data, they can be recorded as the B. fuscescens complex. Intraspecific phenotype plasticity and factors affecting the speciation of different morphospecies in this group of Bryoria are outlined.


2019 ◽  
Vol 95 (2) ◽  
pp. 507-516
Author(s):  
Pâmella Silva de Brito ◽  
Erick Cristofore Guimarães ◽  
Luis Fernando Carvalho-Costa ◽  
Felipe Polivanov Ottoni

A new species of Aphyocharax is described from the Maracaçumé river basin, eastern Amazon, based on morphological and molecular data. The new species differs from all its congeners, mainly by possessing the upper caudal-fin lobe longer than the lower one in mature males, and other characters related to teeth counts, colour pattern, and body depth at dorsal-fin origin. In addition, the new species is corroborated by a haplotype phylogenetic analyses based on the Cytochrome B (Cytb) mitochondrial gene, where its haplotypes are grouped into an exclusive lineage, supported by maximum posterior probability value, a species delimitation method termed the Wiens and Penkrot analysis (WP).


PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5986 ◽  
Author(s):  
Maria Gabriela Cuezzo ◽  
Maria Jose Miranda ◽  
Roberto Eugenio Vogler ◽  
Ariel Anibal Beltramino

BackgroundLand gastropods of the Dry Chaco merit special attention because they comprise a highly diverse but barely studied group.ClessiniaDoering, 1875 are typical inhabitants of this ecoregion. The inclusion of their distribution areas intoSpixiarange, their shell shape similarities, and a former molecular study raised doubts on the monophyly of this genus. The present study review the species ofClessinia, under a morphological, geometric morphometrics, and molecular combined approach.MethodsAdults were collected, photographed, measured, and dissected for anatomical studies. Shell ultrastructure was studied with scanning electron microscope. Geometric morphometric analyses on shells were performed testing if they gave complementary information to anatomy. Two mitochondrial genes, and a nuclear region were studied. Phylogenetic reconstructions to explore the relationships of DNA sequences here obtained to those ofClessiniaandSpixiaspecies from GenBank were performed.ResultsSpecies description on shell, periostracal ornamentation and anatomy is provided. We raised formerClessinia cordovana striatato species rank, naming it asClessinia tulumbensissp. nov. The periostracum, consisting of hairs and lamellae, has taxonomic importance for species identification. Shell morphometric analyses, inner sculpture of penis and proportion of the epiphallus and penis, were useful tools to species identification. Nuclear markers do not exhibit enough genetic variation to determine species relationships. Based on the mitochondrial markers, genetic distances amongClessiniaspecies were greater than 10%, and whileC. cordovana,C. nattkemperi, andC. pagodawere recognized as distinct evolutionary genetic species, the distinction betweenC. stelzneriandC. tulumbensissp. nov. was not evident.ClessiniaandSpixiawere paraphyletic in the molecular phylogenetic analyses. Species ofClessiniahere treated have narrow distributional areas and are endemic to the Chaco Serrano subecoregion, restricted to small patches within the Dry Chaco.ClessiniaandSpixiaare synonymous, and the valid name of the taxon should beClessiniaDoering, 1875 which has priority overSpixiaPilsbry & Vanatta, 1894.DiscussionOur results support the composition ofC. cordovanacomplex by three species,C. cordovana,C. stelzneri, andC. tulumbensissp. nov. The low genetic divergence betweenC. stelzneriandC. tulumbensissp. nov. suggests that they have evolved relatively recently. The formerSpixiaandClessiniaare externally distinguished becauseClessiniahas a detached aperture from the body whorl forming a cornet, periostracal microsculpture extended over dorsal portion of the peristome, five inner teeth on the shell aperture instead of three–four found inSpixia. Morphological similarities exists between both genera in shell shape, type of periostracum microsculpture, reproductive anatomy, besides the overlap in geographic ranges.


2021 ◽  
Vol 13 (13) ◽  
pp. 19976-19984
Author(s):  
Sumit Kumar ◽  
Sharali Sharma ◽  
Deepak Singh

Truss-based morphometric analysis was used to examine phenotypic plasticity of Barilius vagra (Hamilton, 1822) inhabiting the tributaries of the Alaknanda (Ganga River basin) and Chenab (Indus River basin), two geographically distinct river basins in the Indian Himalaya. Fourteen landmarks were connected to generate a truss network of 90 parameters on the body of fish. Eighty morphometric traits out of ninety morphometric measurements explained statistically significant difference among six sampling locations of Barilius vagra from streams in the Alaknanda and Chenab basins. Discriminant function analysis revealed 82% of Barilius vagra specimens originally classified into their own groups. 95% of the variance was explained by 13 principal components. Morphometric characters (1–6, 1–13, 2–5, 2–6, 2–14, 3–6, 4–6, 4–14, 6–12, 7–8, 7–9, 10–11, and 13–14) contributed greatly in differentiation of B. vagra populations from different river basins. The Alaknanda basin reflected some mixing within populations, which may be due to common environmental conditions and fish migration in these streams. This study will be helpful in framing site-specific conservation and management strategies, such as net mesh size selection, avoiding overexploitation, stock augmentation and food availability for different fish populations.


2013 ◽  
Vol 63 (2) ◽  
pp. 217-232 ◽  
Author(s):  
Rosalía Aguilar-Medrano

Chromis is a circumglobal tropical and temperate genus with over 84 species of damselfishes. Studies based in osteological and molecular data have cited the relationship between Azurina and Chromis in the eastern Pacific. The main objectives of the study are: (1) to characterize size and shape in all Chromis and Azurina species of the eastern Pacific, (2) explore the phylogenetic signal of external morphology, and (3) present a hypothesis of the diversification process of this group. According to the results, there is no significant relationship between size and shape. The variation in body shape among all species is related to the height of the trunk, position of the snout and eye, and length of the caudal peduncle. The main morphologic variation between Azurina and Chromis is the degree of elongation of the body. Both Azurina species are closely related to C. punctipinnis and C. atrilobata. The morphological pattern of Azurina integrated it into Chromis. The phylogenetic pattern found by geometric morphometric analyses presented a high similarity with previous results based on molecular data. Phylogeny recovered two main clades, slender-bodied and deep-bodied species. This pattern of morphometric variation is closely related to exploitation of two different reef environments.


2019 ◽  
Author(s):  
Alice Petzold ◽  
Alexandre Hassanin

AbstractMolecular data are now commonly used in taxonomy for delimiting cryptic species. In the case of giraffes, which were treated as a single species (Giraffa camelopardalis) during half of a century, several molecular studies have suggested a splitting into four to seven species, but the criteria applied for taxonomic delimitation were not fully described.In this study, we have analysed all multi-locus DNA sequences available for giraffes using multispecies coalescent (MSC: *BEAST, BPP and STACEY), population genetic (STRUCTURE, allelic networks, haplotype network and bootstrapping) and phylogenetic (MrBayes, PhyML, SuperTRI) methods to identify the number of species. Our results show that depending on the method chosen, different taxonomic hypotheses, recognizing from two to six species, can be considered for the genus Giraffa. Our results confirm that MSC methods can lead to taxonomic over-splitting, as they delimit geographic structure rather than species. The 3-species hypothesis, which recognizes G. camelopardalis sensu strico, G. giraffa, and G. tippelskirchi, is highly supported by phylogenetic analyses and also corroborated by most population genetic and MSC analyses. The three species show high levels of nucleotide divergence in both nuclear (0.35-0.51 %) and mitochondrial sequences (3-4 %), and they are characterised by 7 to 12 exclusive synapomorphies (ES) detected in nine of the 21 nuclear introns analysed for this study. By contrast, other putative species, such as G. peralta, G. reticulata, G. thornicrofti or G. tippelskirchi sensu stricto, do not exhibit any ES in nuclear genes.A robust mito-nuclear conflict was found for the position and monophyly of G. giraffa and G. tippelskirchi, which is explained firstly by a mitochondrial introgression from Masai giraffe to southeastern giraffe during the Pleistocene, and secondly, by gene flow mediated by male dispersal between southern populations (subspecies G.g. giraffa and G.g. angolensis).


2021 ◽  
Vol 82 (1) ◽  
Author(s):  
Tarek G. Ismail

Abstract Background Isopods shape features are sensitive and respond to several selective pressures which may result in variations of these features. These pressures might reflect the heterogeneity of the environment where an animal lives. Land isopods Porcellionides pruinosus were collected from an agricultural field. Landmarks geometric morphometrics was applied to evaluate its shape changes during two different seasons. The present work aims to (i) assess and characterize morphological changes in body shape of P. pruinosus as a response to seasonal variations, (ii) determine differences in the body shape during ontogeny, (iii) examine the effect of intraspecific allometry to interpret the observed variations in the species, and (iv) clarify whether the body shape of P. pruinosus can be used as a sexual differentiating trait. Results Juveniles showed no seasonal variations in the body shape, which were detected among adults, females and males as shown by PCA, DFA, and MANOVA. The adult winter forms have large bodies, small heads, broad pereons, and short but wide telsons. The adult summer forms have small slender bodies, slightly stretched heads, and relatively long telsons. Juveniles’ growth to adulthood showed body shape changes in the head and pereon, that include shrank of the head in the anteroposterior direction and its level became slightly lower than the body. The pereon becomes broader and the two anterolateral projections of the first pereonite extend anteriorly, reaching a little beyond the posterior margin of the eyes. Present species showed a shape sexual dimorphism which includes the broader body and more convex pereon in females and a small waist between the second and third pleonites in males. Shape sexual dimorphism was attributed to reproductive activity. Both allometric trajectories of juveniles and adults (ontogenetic allometry) and of sexes (static allometry) were parallel. Conclusions The landmark geometric morphometric technique was able to reveal the seasonal shape variations in terrestrial isopod P. pruinosus. Also, this method provides information about shape variations between juveniles and adults, as well as about shape sexual dimorphism.


Author(s):  
R. Stavetska ◽  
Y. Dynko ◽  
M. Bushtruk ◽  
I. Starostenko ◽  
O. Babenko ◽  
...  

It has been experimentally proven that the strength and direction of the connection between the linear type traits evaluation of the Ukrainian black-and-white dairy breed cows and their body build depends on the type of the build and the sign of the exterior. The study was conducted in 2018 on a breeding plant of the Ukrainian Black-and-White Dairy breed SPC named Shchorsa in Kiev region (n=89). Differentiation of cows on types of their body build was conducted by the method proposed by Chernenko (low-capacity, mid-capacity and high-capacity types) and Kolesnik (by the massiveness index – on the friable and dense, the bone index – delicate and rough, the wide-breast and wide-rump indices – on narrow-body and wide-body types). It was found that the cow-heiferswere well-developed, had intermediate stature and optimum body condition score, deep body, and wide, slight slope rump. They alsohad desirable rear legs, set and foot angle but some toe-out, the udder was well-balanced. Under the good total score of the exterior of studied cows there were some animals with short stature (134– 136 cm), very wide rump, straight rear legs side view and toe-out, extremely steep foot angle, loose fore udder attachment, deep udder below hocks and front teat placement inside of quarter. The degree of development of the studied linear traits of cow-heifers confirms their in-herd variability. The variability of the exterior traits varies from 10,7 % (body depth) to 38,6 % (stature). In addition to the stature of a significant variability was characterized of angularity (22,4 %), rear legs set (22,5 %), body condition score (21,8 %), as well as traits that describe udder: rear udder attachment (31,4 %), udder depth (32,6 %) and front and rear teat position (31,3 % and 25,1 %, respectively). The high variability of linear traits indicates the possibility of effective their selection. As a result of the research, it has been established that the strength and direction of the correlations between the linear type traits evaluation of Ukrainian Black-and-White Dairy breed cows and the type of their body build depends on the type of the body build and the linear trait. The low-, mid- and high-capacity bodies build types (according to Chernenko) reliably correlate with chest width (r=0,58) and body depth (r=0,48), rear legs rear view (r=0,30), the central ligament (r=0,28), udder depth (r =-0,22) and teat length (r=0,25), P˂0,01–0,001. Friable and dense bodies build (according to Kolesnik) were most strongly associated with stature (r=-0,28), chest width (r =-0,70), and body depth (r=-0,38), as well as with rear legs rear view (r=-0,23), P˂0,05...0,001; delicate and rough bodies build – with stature (r=-0,51), angularity (r=-0,22),rump width (r=-0,35), udder depth (r=-0,27) and rear udder attachment (r =0,20), P ˂ 0,05–0,001; narrow-body and wide-body types – with chest width (r=0,30) and rump width (r=0,23), P˂0,05–0,01. Linear type trait evaluation of cows depends on the body build. The strength and direction of the correlations between types of body build and linear traits showed that the most informative is the classification of the body build by low-, mid- and high-capacity according to Chernenko – on the average η2x=17,5 %. The less informative – by narrow-body and wide-body types according to Kolesnik – η2x=7,6 %. The classification of cows on delicate-rough, narrow-body and wide-body types (according to Kolesnik) according to informativeness and reliability can have the intermediate position – η2x=10,0–11,5 %. The strongest influence on the body build has the cows’ height (η2x=27,9 % on average for all studied types of body build), chest width (η2x=33,5 %), body depth (η2x=21,8 %), rump width (η2x=24,1 %) and rear legs (η2x=18,7 %). Key words: cows, linear type trait evaluation, body build, correlation, power of influence.


2014 ◽  
Vol 25 (1-2) ◽  
pp. 61-68 ◽  
Author(s):  
V. I. Monchenko ◽  
L. P. Gaponova ◽  
V. R. Alekseev

Crossbreeding experiments were used to estimate cryptic species in water bodies of Ukraine and Russia because the most useful criterion in species independence is reproductive isolation. The problem of cryptic species in the genus Eucyclops was examined using interpopulation crosses of populations collected from Baltic Sea basin (pond of Strelka river basin) and Black Sea basin (water-reservoires of Dnieper, Dniester and Danube rivers basins). The results of reciprocal crosses in Eucyclops serrulatus-group are shown that E. serrulatus from different populations but from water bodies belonging to the same river basin crossed each others successfully. The interpopulation crosses of E. serrulatus populations collected from different river basins (Dnipro, Danube and Dniester river basins) were sterile. In this group of experiments we assigned evidence of sterility to four categories: 1) incomplete copulation or absence of copulation; 2) nonviable eggs; 3) absence of egg membranes or egg sacs 4) empty egg membranes. These crossbreeding studies suggest the presence of cryptic species in the E. serrulatus inhabiting ecologically different populations in many parts of its range. The same crossbreeding experiments were carries out between Eucyclops serrulatus and morphological similar species – Eucyclops macruroides from Baltic and Black Sea basins. The reciprocal crossings between these two species were sterile. Thus taxonomic heterogeneity among species of genus Eucyclops lower in E. macruroides than in E. serrulatus. The interpopulation crosses of E. macruroides populations collected from distant part of range were fertile. These crossbreeding studies suggest that E. macruroides species complex was evaluated as more stable than E. serrulatus species complex.


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