Phylogenetic Analysis and Taxonomic Delimitation of the “Hairy-Fig” Complex of Ficus sect. Eriosycea (Moraceae) in China

Phytotaxa ◽  
2016 ◽  
Vol 261 (2) ◽  
pp. 121 ◽  
Author(s):  
JING LU ◽  
PING GUI ◽  
ZHONG-LING LU ◽  
LI-FANG ZHANG ◽  
HUAI-ZHEN TIAN ◽  
...  

The hairy-fig complex of Ficus sect. Eriosycea (Moraceae) includes F. hirta, F. esquiroliana, F. simplicissima and a Chinese entity misidentified as F. fulva. These species are difficult to delimit because of the continuously varying morphological characteristics. In order to re-evaluate the status of these taxa, herbarium specimens were extensively examined and 118 samples of the complex were selected for anatomical and molecular analysis. ITS, ETS and trnH-psbA were applied for constructing phylogenetic trees and fluorescently labeled microsatellite primers were screened for cluster analysis. The results showed that all the four species show continuously variable morphological characters and make up one well supported clade on the phylogenetic trees, and that this similar genetic background was confirmed by the cluster analysis. In conclusion, all the four taxa of the hairy-fig complex recorded in China should be combined as one species F. simplicissima, with two varieties: var. simplicissima and var. roxburghii (Miquel) Hong-Qing Li & Jing Lu.

Author(s):  
Udon Pongkawong ◽  
◽  
Jatupol Kampuansai ◽  
Rossarin Pollawatn ◽  
Arunothai Jampeetong ◽  
...  

Abstract “Dok Hin” is the Thai local name for Selaginella species that form rosettes. They commonly distributes in Siberia, Manchuria, southern China, Japan, the Philippines and Thailand. Morphology of Dok Hin is very resemble leading to misidentification. So, exactly number of species of Dok Hin in Thailand and their differences in morphological characteristics is not well understood. Thus, revision of morphological characters and phylogenetic confirmation of the taxonomic identification are needed. This study aims to examine morphological charateristics and phylogenetic patterns in eight populations of the Dok Hin in Northern Thailand. Morphology of Dok Hin from each populations was quantitatively examined using 15 vegetative and 6 reproductive characters meanwhile phylogenetic analyses was explored by DNA barcode ITS2. The results of the phylogenetic analysis revealed the existence of two species of Dok Hin, S. tamariscina and S. pulvinata. Selaginella tamariscina can be distinguished from S. pulvinata by its presence of a pseudotrunk above ground and ridges of dorsal leaves. On the other hand, the results of phylogenetic analysis indicated the differences among populations of S. pulvinata as well. Chiang Mai populations of S. pulvinata was characterized by peculiar set of characters long leaves and leaf apices look like caudate, while the rest of their populations have shorter leaves and leaf apices look like aristate. It indicates that S. pulvinata has genetic and phenotypic divergence among populations. However, additional studies of Dok Hin populations in other parts of Thailand and studies on different genetic markers are necessary to confirm the taxonomic status of S. pulvinata. Keywords: Dok Hin, Morphometric, Phylogeny, Pseudotrunk, Resurrection plant


Phytotaxa ◽  
2018 ◽  
Vol 360 (3) ◽  
pp. 220 ◽  
Author(s):  
ZAHRA ARABI ◽  
FARROKH GHAHREMANINEJAD ◽  
RICHARD K. RABELER ◽  
IRINA SOKOLOVA ◽  
GÜNTHER HEUBL ◽  
...  

The status of the genus Dichodon has long been debated, and its taxonomic position in tribe Alsineae has been changed during the time from a section or subgenus in Cerastium to genus sister to Holosteum. This group comprises important members of wet meadows in alpine and subalpine vegetation of Europe, arctic regions, and SW-Asia plus one species known as a weed in N-America, and a further one occuring in mountains of Taiwan. In order to clarify the taxonomic questions concerning this group and its species delimitation, we constructed phylogenetic trees, selecting several species belonging to tribe Alsineae as representatives of major lineages of this tribe as well as several accessions of Dichodon. Morphological studies focused more intensively on members of Dichodon using herbarium specimens and direct field examinations. The results confirm those of recent molecular phylogenetic studies, indicating Dichodon as a monophyletic genus sister to Holosteum and not Cerastium. In addition, the obtained cladograms support five distinct groups in Dichodon corresponding to five species of this genus we recognize in Iran, the focal area of this study. Seed micromorphology provides strong support for the recognition of Dichodon as a separate genus, but it is not informative at species and subspecies ranks due to constancy of most of seed characters within the genus. As part of this study, a new species—Dichodon alborzensis—is described, D. kotschyi is reported in Iran for the first time, and Cerastium schischkinii is placed in synonymy (new synonymy) under D. kotschyi.


1994 ◽  
Vol 72 (12) ◽  
pp. 2217-2237 ◽  
Author(s):  
Hinrich Kaiser ◽  
David M. Green ◽  
Michael Schmid

Populations of Eleutherodactylus on the island of Dominica, West Indies, differ from other Lesser Antillean members of the genus by their vocalizations, morphology, sexual size dimorphism, allozymes, and chromosomes. Thus, these populations comprise a new endemic species, closely related to E. johnstonei and E. martinicensis. The new species is most abundant in montane forest habitats at elevations of more than 500 m. Females commonly attain snout–vent lengths of more than 35 mm, making them the largest Lesser Antillean Eleutherodactylus. Frogs are brown during the day, but change color to dark orange when active at night. This species is the ninth Eastern Caribbean Eleutherodactylus species and the fifth single-island endemic. A phylogenetic analysis of external and internal morphological characteristics shows that Eastern Caribbean Eleutherodactylus are members of two distinct clades, one of South American origin, the other of Greater Antillean ancestry. We suggest that the present distribution of these species results from the dispersal of elements of the larger herpetofaunas from the Greater Antilles and South America, and that rapid divergence of the Eastern Caribbean Eleutherodactylus fauna may be continuing. The phylogenetic analysis also confirms that morphological characters of Eleutherodactylus species can be highly homoplastic.


Phytotaxa ◽  
2013 ◽  
Vol 145 (1) ◽  
pp. 1 ◽  
Author(s):  
Federico O. Robbiati ◽  
Alícia Lamarque ◽  
Ana M. Anton ◽  
Renée H. Fortunato

Multivariate and univariate analyses based on morphological characters and seed soluble protein electrophoretic profiles were carried out in order to understand the taxonomic status within the complex S. fabrisii-S. trichosepala. Twenty morphological characters from herbarium specimens were recorded and analyzed by ANOVA, principal component and cluster analysis. The seed protein electrophoretic analysis including cluster analysis was based on three populations: one of S. fabrisii and two of S. trichosepala. The results showed that both taxa differed only by three morphological features; in parallel, the CPA and CA demonstrate that no clearly separated group can be recognized. The seed protein electrophoretic profiles show a high degree of similarity. Based on these results, and due to the variability observed, the inclusion of S. fabrisii in the synonymy of S. trichosepala is proposed.


2020 ◽  
Vol 96 (2) ◽  
pp. 455-498
Author(s):  
Kai Horst George

Uncovering the systematics of CopepodaHarpacticoida, the second-most abundant component of the meiobenthos after Nematoda, is of major importance for any further research dedicated especially to ecological and biogeographical approaches. Based on the evolution of the podogennontan first swimming leg, a new phylogenetic concept of the Ancorabolidae Sars and Cletodidae T. Scott sensu Por (Copepoda, Harpacticoida) is presented, using morphological characteristics. It confirms the polyphyletic status of the Ancorabolidae and its subfamily Ancorabolinae Sars and the paraphyletic status of the subfamily Laophontodinae Lang. Moreover, it clarifies the phylogenetic relationships of the so far assigned members of the family. An exhaustive phylogenetic analysis was undertaken using 150 morphological characters, resulting in the establishment of a now well-justified monophylum Ancorabolidae. In that context, the Ancorabolus-lineage sensu Conroy-Dalton and Huys is elevated to sub-family rank. Furthermore, the membership of Ancorabolina George in a rearranged monophylum Laophontodinae is confirmed. Conversely, the Ceratonotus-group sensu Conroy-Dalton is transferred from the hitherto Ancorabolinae to the Cletodidae. Within these, the Ceratonotus-group and its hypothesised sister-group Cletodes Brady are combined to form a monophyletic subfamily Cletodinae T. Scott, subfam. nov. Consequently, it was necessary to restructure the Ancorabolidae, Ancorabolinae and Laophontodinae and extend the Cletodidae to include the displacement and exclusion of certain taxa. Moreover, comparison of the Ancorabolidae, Cletodidae, Laophontoidea and other Podogennonta shows that the Ancorabolidae and Cletodidae form sister-groups in a monophylum Cletodoidea Bowman and Abele, which similarly has a sister-group-relationship with the Laophontoidea T. Scott. According to the present study, both taxa constitute a derived monophylum within the Podogennonta Lang.


2018 ◽  
Vol 10 (2) ◽  
pp. 245-251
Author(s):  
Weni Lestari ◽  
Jumari Jumari ◽  
Rejeki Siti Ferniah

Nepenthes spp. is a typical plant of Southeast Asia especially Indonesia which has a special leaf modification called a pitcher. The largest number of Nepenthes spp. species in Indonesia is on the island of Sumatra. The purpose of this reseach was to identify and analyze cluster Nepenthes spp. from South Sumatra based on morphological characteristics. The specimens were collected from the forest of Tekorejo Village, Air Itam Village and cultivation location in Palembang city of South Sumatra. Identification of morphological characters performed on the characteristics of root, stem, leaves, and pitcher. The morphological data is used for cluster analysis using NTSYS software version 2.02. The identification results showed 9 variants of Nepenthes spp. which belong to the species N. mirabilis, N. gracilis, and N. sumatrana. Dendogram analysis results form two main clusters with a similarity value of 22%. The first cluster consists of N. mirabilis and N. sumatrana. The second cluster consists of N. gracilis. Based on the results of this study can be concluded that the species Nepenthes spp. South Sumatra is N. mirabilis, N. gracilis, and N. sumatrana. The results of this study will be dedicated to updating information about the existence of Nepenthes spp. from South Sumatra and his cluster.


2020 ◽  
Vol 21 (11) ◽  
Author(s):  
Rahayu Rahayu ◽  
Fatimah Suwardjo ◽  
Ji Bae Eun ◽  
Geun Mo Yang ◽  
Soo Choi Joon

Abstract. Rahayu, Fatimah, Bae EJ, Mo YG, Choi JS. 2020. Genetic diversity and morphological characteristics of native seashore paspalum in Indonesia. Biodiversitas 21: 4981-4989. Seashore paspalum (Paspalum vaginatum) is a warm-season turfgrass indigenous to tropical and coastal areas worldwide. The objectives of this study were to measure the genetic diversity and genetic variation of Indonesian seashore paspalum germplasm. Three turf quality, six morphological characters, and ten SSR (microsatellite) markers were used to assess genetic relationships and genetic variation among 22 germplasm resources from Indonesia and one commercial variety (Salam) from United States of America. The results showed significant variation for five morphological characters among 23 tested seashore paspalum accessions. The cluster analysis of morphological characters of 23 seashore paspalum accessions using 0,6 cut off divided into three morphological types: tall high-density, intermediate, and dwarf low-density ecotype. The genetic variation revealed 22 alleles with average number of alleles per locus was 2 and polymorphism information content (PIC) values average was 0.33. The microsatellite marker cluster analysis showed that 23 seashore paspalum accessions were grouped into two major groups, with a genetic similarity coefficient was 0,72. The low level of genetic diversity occurred among Indonesia natural grass germplasm and the genetic distance was relatively low between Indonesian germplasm and Salam variety. The genetic diversity and morphological characteristics will be useful for further study and utilization of Indonesian seashore paspalum germplasm.


2019 ◽  
Author(s):  
Natalia Tkach ◽  
Julia Schneider ◽  
Elke Döring ◽  
Alexandra Wölk ◽  
Anne Hochbach ◽  
...  

ABSTRACTTo investigate the evolutionary diversification and morphological evolution of grass supertribe Poodae (subfam. Pooideae, Poaceae) we conducted a comprehensive molecular phylogenetic analysis including representatives from most of their accepted genera. We focused on generating a DNA sequence dataset of plastid matK gene–3’trnK exon and trnL– trnF regions and nuclear ribosomal ITS1–5.8S gene–ITS2 and ETS that was taxonomically overlapping as completely as possible (altogether 257 species). The idea was to infer whether phylogenetic trees or certain clades based on plastid and nuclear DNA data correspond with each other or discord, revealing signatures of past hybridization. The datasets were analysed using maximum parsimony, maximum likelihood and Bayesian approaches. Instances of severe conflicts between the phylogenetic trees derived from both datasets, some of which have been noted earlier, unambiguously point to hybrid origin of several lineages (subtribes, groups of genera, sometimes genera) such as Phalaridinae, Scolochloinae, Sesleriinae, Torreyochloinae; Arctopoa, Castellia, Graphephorum, Hyalopodium, Lagurus, Macrobriza, Puccinellia plus Sclerochloa, Sesleria, Tricholemma, American Trisetum, etc. and presumably Airinae, Holcinae and Phleinae. ‘Calamagrostis’ flavens appears to be an intergeneric hybrid between Agrostis and Calamagrostis. Most frequently there is good agreement of other regions of the trees, apart from intrinsic different phylogenetic resolution of the respective DNA markers. To explore the to date rather unclear morphological evolution of our study group a data matrix encompassing finally 188 characters was analysed for ancestral state reconstructions (ASR) using the tree from the combined molecular dataset as presumably best approximation to the species phylogeny. For 74 characters ASRs were feasible and yielded partly surprising results for the study group as a whole but also for some of their subdivisions. Considering taxonomy and classification it became evident, that many morphological characters show a very high degree of homoplasy and are seemingly able to change within comparatively short timespans in the evolution of our grasses. Most of the taxonomic units distinguished within our study group, e.g. as subtribes, are defined less by consistent morphological characters or character combinations and should be rather understood as clades revealed by molecular phylogenetic analysis. One reason for this extreme homoplasy concerning traditionally highly rated characters of inflorescences or spikelets and their components might be that they have little to do with pollination (always wind) or adaptation to pollinators as in other angiosperms but rather with dispersal and diaspores. Easily changing structure of spikelet disarticulation, of glume, lemma or awn characters might be advantageous in the rapid adaptation to different habitats and micro-habitats, which was evidently most successfully accomplished by these grasses. A partly revised classification of Poodae is presented, including a re-instatement of tribes Aveneae and Poeae s.str. Following a comparatively narrow delineation of preferably monophyletic subtribes, Antinoriinae, Avenulinae, Brizochloinae, Helictochloinae, Hypseochloinae are described as new. New genera are Arctohyalopoa and Hyalopodium. New combinations are Arctohyalopoa lanatiflora, A. lanatiflora subsp. ivanoviae, A. lanatiflora subsp. momica, Colpodium biebersteinianum, C. kochii, C. trichopodum, C. verticillatum, Deschampsia micrathera, Dupontia fulva, Festuca masafuerana, Hyalopodium araraticum, Paracolpodium baltistanicum, Parapholis cylindrica, P. ×pauneroi. Festuca masatierrae is a new name.Supporting Information may be found online in the Supporting Information section at the end of the article.


2009 ◽  
Vol 23 (5) ◽  
pp. 422
Author(s):  
Xiao-Yan Li ◽  
Hong-Zhang Zhou

The paederine genus Paederus s.l. (Coleoptera : Staphylinidae) is a hyperdiverse group of some 500 species worldwide. Although the subtribe Paederina, in which the genus resides, is monophyletic the status of numerous genera and subgenera is questionable and the current classification is likely to be flawed. As part of detailed studies on the paederine fauna of China, we undertook a preliminary morphologically-based phylogenetic analysis to determine the relationships of Paederus (Gnathopaederus) and related subgenera, as a basis for a revision of the subgenus, and as an attempt to provide a better framework for future taxonomic studies on the group as a whole. The analysis was based on 66 adult morphological characters for 30 ingroup taxa, including all six species of P. (Gnathopaederus). The results show that P. (Gnathopaederus) and P. (Paederus), and the genera Megalopaederus, Pachypaederus and Paederidus are monophyletic, and that P. (Eopaederus) and P. (Harpopaederus) are paraphylyetic. However, our analysis did not offer a robust solution to relationships among other clades within Paederus s.l. although it seems clear that Paederus s.l. is not monophyletic with respect to the above genera. The monophyly of P. (Gnathopaederus) is supported by the mandibular basal medial tooth having two cuspids separated dorsoventrally. Based largely on this character state, the definition of the subgenus is refined; six species are recognized, including two new species described from China as follows: P. (G.) daozhenensis, sp. nov. from Guizhou, and P. (G.) jilongensis, sp. nov. from Xizang; three species, P. bursavacua Willers, P. yunnanensis Willers and P. solodovnikovi Willers, are newly assigned to the subgenus according to a revised subgeneric definition. New morphological characters including important secondary sexual characters and sexual dimorphism are described and male genitalia are illustrated for the first time for the type species of the subgenus, P. (G.) szechuanus (Chapin). A key to the six species is presented and the distribution of each species is documented and discussed.


1997 ◽  
Vol 45 (3) ◽  
pp. 317 ◽  
Author(s):  
D. A. Good ◽  
A. M. Bauer ◽  
R. A. Sadlier

The phylogenetic analysis of allozyme characters within the New Caledonian giant geckos, genus Rhacodactylus, yields a pattern of relationships that is largely congruent with that derived from morphological data. A ‘total evidence’ approach, incorporating 13 allozyme and 29 morphological characters, yields a single most-parsimonious tree with the pattern: R. auriculatus ((R. leachainus (R. ciliatus, R. chahoua)) (R. sarasinorum, R. trachyrhynchus)). A phenetic analysis based on Nei’s genetic distance data results in a similar branching pattern. The genus Pseudothecadactylus is tentatively regarded as valid because allozyme data conflict strongly with morphological data that suggest that these geckos evolved from within Rhacodactylus. Allozymes and available morphological data do not support the recognition of the recently described subspecies R. leachianus henkeli.


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