scholarly journals Identification of QTL Combinations that Cause Spikelet Sterility in Rice Derived from Interspecific Crosses

Rice ◽  
2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Chang-Min Lee ◽  
Jung-Pil Suh ◽  
Hyun-Su Park ◽  
Man-Kee Baek ◽  
O-Young Jeong ◽  
...  
Keyword(s):  
Genetic Model ◽  
Major Effect ◽  
Spikelet Fertility ◽  
Interspecific Crosses ◽  
Hybrid Breakdown ◽  
Negative Effects ◽  
Wide Crosses ◽  
Spikelet Sterility ◽  
Gene Effects ◽  
Marker Loci

Abstract Background The exploitation of useful genes through interspecific and intersubspecific crosses has been an important strategy for the genetic improvement of rice. Postzygotic reproductive isolation routinely occurs to hinder the growth of pollen or embryo sacs during the reproductive development of the wide crosses. Result In this study, we investigated the genetic relationship between the hybrid breakdown of the population and transferred resistance genes derived from wide crosses using a near-isogenic population composed of 225 lines. Five loci (qSS12, qSS8, qSS11, ePS6-1, and ePS6-2) associated with spikelet fertility (SF) were identified by QTL and epistatic analysis, and two out of five epistasis interactions were found between the three QTLs (qSS12, qSS8 and qSS11) and background marker loci (ePS6-1 and ePS6-2) on chromosome 6. The results of the QTL combinations suggested a genetic model that explains most of the interactions between spikelet fertility and the detected loci with positive or negative effects. Moreover, the major-effect QTLs, qSS12 and qSS8, which exhibited additive gene effects, were narrowed down to 82- and 200-kb regions on chromosomes 12 and 8, respectively. Of the 13 ORFs present in the target regions, Os12g0589400 and Os12g0589898 for qSS12 and OS8g0298700 for qSS8 induced significantly different expression levels of the candidate genes in rice at the young panicle stage. Conclusion The results will be useful for obtaining a further understanding of the mechanism causing the hybrid breakdown of a wide cross and will provide new information for developing rice cultivars with wide compatibility.

scholarly journals Epistatic Control of Non-Mendelian Inheritance in Mouse Interspecific Crosses

Genetics ◽  
1996 ◽  
Vol 143 (4) ◽  
pp. 1739-1752 ◽  
Author(s):  
Xavier Montagutelli ◽  
Rowena Turner ◽  
Joseph H Nadeau
Keyword(s):  
X Chromosome ◽  
Genetic Basis ◽  
Mendelian Inheritance ◽  
The Other ◽  
Interspecific Crosses ◽  
Chromosome 2 ◽  
Mus Spretus ◽  
F1 Hybrid ◽  
Strong Deviation ◽  
Marker Loci

Abstract Strong deviation of allele frequencies from Mendelian inheritance favoring Mus spretus-derived alleles has been described previously for X-linked loci in four mouse interspecific crosses. We reanalyzed data for three of these crosses focusing on the location of the gene(s) controlling deviation on the X chromosome and the genetic basis for incomplete deviation. At least two loci control deviation on the X chromosome, one near Xist (the candidate gene controlling X inactivation) and the other more centromerically located. In all three crosses, strong epistasis was found between loci near Xist and marker loci on the central portion of chromosome 2. The mechanism for this deviation from Mendelian expectations is not yet known but it is probably based on lethality of embryos carrying particular combinations of alleles rather than true segregation distortion during oogenesis in F1 hybrid females.

Spikelet fertility and heat shock transcription factor (Hsf) gene responses to heat stress in tolerant and susceptible rice (Oryza sativa L.) genotypes

2019 ◽  
Vol 157 (04) ◽  
pp. 283-299 ◽  
Author(s):  
C. Malumpong ◽  
S. Cheabu ◽  
C. Mongkolsiriwatana ◽  
W. Detpittayanan ◽  
A. Vanavichit
Keyword(s):  
Heat Stress ◽  
Pollen Germination ◽  
Seed Set ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Pollen Viability ◽  
Spikelet Fertility ◽  
Anther Dehiscence ◽  
Spikelet Sterility ◽  
Plant Parts

AbstractThe reproductive stage of rice is the most sensitive to heat stress, which can lead to spikelet sterility. Thus, heat-tolerant and heat-susceptible genotypes were used to investigate their differences in terms of phenotypic responses and expression changes of Hsf genes at the pre-flowering stage under heat stress. Results clearly showed that panicles had the highest temperature compared with other plant parts under both natural and heated conditions. However, the temperatures of tolerant and susceptible genotypes were not significantly different. In terms of spikelet fertility, the tolerant lines M9962 and M7988 had high seed set because their anther dehiscence, pollen viability and pollen germination were only slightly affected. In contrast, the susceptible line Sinlek showed severe effects at all steps of fertilization, and the pollen viability of M7766 was slightly affected under heat stress but was more affected in terms of anther dehiscence and pollen germination. Both susceptible lines showed dramatically decreased seed set. In addition, the expression of six HsfA genes in the flag leaves and spikelets at the R2 stage of plants under heat stress showed different responses. Notably, expression of the HsfA2a gene was predominantly upregulated in the flag leaf and spikelets under heat stress in M9962. Therefore, it can be concluded that heat stress has severe effects on the stamen, and that different genotypes have different susceptibilities to heat stress.

Identification of Novel QTLs for Spikelet Fertility, Panicle Compactness and Phytohormone Ethylene to Decipher Poor Grain Filling of Basal Spikelets in Dense Panicle Rice

2021 ◽  
Author(s):  
Sudhanshu Sekhar ◽  
Jitendra Kumar ◽  
Soumya Mohanty ◽  
Niharika Mohanty ◽  
Rudraksh Shovan Panda ◽  
...  
Keyword(s):  
Candidate Genes ◽  
Ethylene Production ◽  
Recombinant Inbred Lines ◽  
Grain Filling ◽  
Spikelet Fertility ◽  
Rice Cultivars ◽  
Spikelet Number ◽  
Spikelet Sterility ◽  
Ubiquitin Protein Ligase ◽  
Comparative Expression Analysis

Abstract High grain number is positively correlated with grain yield in rice, but it is compromised because of poor filling of basal spikelets in dense panicle bearing numerous spikelets. The phenomenon that turns the basal spikelets of compact panicle sterile in rice is largely unknown. In order to understand the factor(s) that possibly determines such spikelet sterility in compact panicle cultivars, QTLs and candidate genes were identified for spikelet fertility percentage, panicle compactness and ethylene production that significantly influence the grain filling using recombinant inbred lines developed from a cross between indica rice cultivars, PDK Shriram (compact, high spikelet number) and Heera (lax, low spikelet number). Novel QTLs, qSFP1.1, qSFP3.1 and qSFP6.1 for spikelet fertility percentage; qIGS3.2 and qIGS4.1 for panicle compactness; and qETH1.2, qETH3.1 and qETH4.1 for ethylene production were consistently identified in both kharif seasons of 2017 and 2018. The comparative expression analysis of candidate genes like ERF3, AP2-like ethylene-responsive transcription factor, EREBP, GBSS1, E3 ubiquitin-protein ligase GW2, and LRR receptor-like serine/threonine-protein kinase ERL1 associated with identified QTLs revealed their role in poor grain filling of basal spikelets in dense panicle. These candidate genes thus could be important for improving grain filling in compact-panicle rice cultivars through biotechnological interventions.

Estimating genetic gains from alternative breeding strategies for clonal forestry

1992 ◽  
Vol 22 (1) ◽  
pp. 14-23 ◽  
Author(s):  
T.J. Mullin ◽  
Y.S. Park
Keyword(s):  
Linear Model ◽  
Genetic Parameters ◽  
Genetic Variance ◽  
Genetic Model ◽  
Large Fraction ◽  
Breeding Strategies ◽  
Clonal Forestry ◽  
Components Of Variance ◽  
Gene Effects ◽  
Dominance Variance

Concepts and procedures are presented for the analysis of progeny trials that incorporate clonal replication as a means to resolve variance arising from nonadditive gene effects. Components of variance from the linear model may be expressed in terms of expected covariances among relatives, and these, in turn, may be used to derive approximations of additive, dominance, and epistatic components of genetic variance. In addition to the usual assumptions applied to conventional progeny trials, the use of this expanded genetic model in the analysis of tests with clonal replicates assumes that the greatest portion of the total epistasis is due to interactions involving groups of more than two or three loci. If this assumption is not satisfied, estimates of additive and dominance variance, including those from trials without clonal replicates, will be contaminated by a large fraction of epistasis, and total epistasis will be underestimated by a corresponding amount. Heritability and gain formulae for alternative selection and deployment schemes are developed and illustrate the use of genetic parameters in the comparison of seedling and clonal reforestation strategies.

scholarly journals Pollen and Spikelet Analysis in F1 Rice Hybrids and their Parents

2014 ◽  
Vol 8 ◽  
pp. 120-126 ◽  
Author(s):  
Bal K. Joshi ◽  
Laxmi P. Subedi ◽  
Santa B. Gurung ◽  
Ram C. Sharma
Keyword(s):  
Pollen Fertility ◽  
Practical Importance ◽  
Pollen Grains ◽  
Gene Interaction ◽  
Pollen Sterility ◽  
Spikelet Fertility ◽  
High Fertility ◽  
Male Sterile ◽  
Pollen Abortion ◽  
Spikelet Sterility

Pollen analysis can be used to discriminate between different species, identify possible  interspecies hybrids, identify restorer and maintainer lines, useful to study genetics of  restorer gene, interaction between chromosome and cytoplasm and relationship between  parents. Pollen abortion system of male sterility is an important tool in hybrid rice  production and spikelet is the major yield components. Nine improved cultivars, six  landraces and three wild aborted cytoplasmic-genetic male sterile (CMS) lines were used to  analyze pollen and spikelet in F1 rice hybrids and their parents. The frequency of pollen  categories and its relationship to spikelet fertility were investigated. Pollen sterility of the  F1s was determined by staining pollen grains in 1% potassium iodide-iodine (I-KI) solution.  Spikelet fertility was determined by counting the total number of seed set in proportion to  the total number of spikelets. Correlation and regression coefficients for some traits were  computed. In hybrids, pollen fertility ranged from 0.5 to 82% and spikelet fertility from 0 to  87%. Pollen fertility varied from 28 to 97%, while spikelet fertility from 73 to 91% in pollen  parents. The highest and the lowest percentages of pollen fertility were found in Chaite-6  and Chiunde cultivars respectively. Spikelet fertility percentage varied widely among  hybrids and many hybrids had lower spikelet fertility percentage than their parents.  Therefore, it is of practical importance to understand the causes of high spikelet sterility in  hybrids for possible increase in spikelet fertility. Highly significant positive correlation was  found between stained round fertile (SRF) pollen and spikelet fertility. The positive value of  correlation and regression coefficient on SRF and spikelet fertility were found between F1  and mid parent, and F1 and male parent. High fertility of cross may be due to the presence of  a wide compatibility gene or restorer genes in the cultivar. Lower pollen and spikelet  fertility of the crosses was attributed to effect of the genetic background of the tester parent. Nepal Agric. Res. J. Vol. 8, 2007, pp. 120-126 DOI: http://dx.doi.org/10.3126/narj.v8i0.11605  

scholarly journals Mapping segregation distortion loci and quantitative trait loci for spikelet sterility in rice (Oryza sativa L.)

2005 ◽  
Vol 86 (2) ◽  
pp. 97-106 ◽  
Author(s):  
CHUNMING WANG ◽  
CHENGSONG ZHU ◽  
HUQU ZHAI ◽  
JIANMIN WAN
Keyword(s):  
Oryza Sativa ◽  
Segregation Distortion ◽  
Quantitative Trait ◽  
Oryza Sativa L ◽  
Segregation Ratio ◽  
Chromosome 8 ◽  
Spikelet Fertility ◽  
Spikelet Sterility ◽  
Multipoint Method ◽  
Two Populations

Markers with segregation ratio distortion are commonly observed in data sets used for quantitative trait locus (QTL) mapping. In this study, a multipoint method of maximum likelihood (ML) was newly developed to estimate the positions and effects of the segregation distortion loci (SDLs) in two F2 populations of rice (Oryza sativa L.), i.e. Taichung65/Bhadua (TB; japonica–indica cross) and CPSLO17/W207-2 (CW; japonica–japonica). Of the four parents, W207-2 and Bhadua were found to be spikelet semi-sterile and stably inherited through selfing, and spikelet fertility segregated in the two populations. Therefore, recombination frequencies were recalculated after mapping the SDLs by using the multipoint method, and the molecular linkage maps of the two F2 populations were constructed to detect QTLs underlying spikelet fertility. As a result, five SDLs in the TB population were mapped on chromosomes 1, 3, 8 and 9, respectively. Two major QTLs underlying spikelet fertility, namely qSS-6a and qSS-8a, were detected on chromosomes 6 and 8, respectively. In the CW population, a total of 12 SDLs were detected on all 12 chromosomes except 1, 5, 7 and 11. Three QTLs underlying spikelet sterility, namely qSS-2, qSS-6b and qSS-8b on chromosomes 2, 6 and 8, were determined on the whole genome scale. Interestingly, both qSS-6a and qSS-6b, detected in the two F2 populations respectively, were located on a similar position as the S5 gene on chromosome 6; while qSS-8a and qSS-8b were also simultaneously detected on similar positions of the short arm of chromosome 8 in the two populations, which should be a new sterility gene showing the same type of zygotic selection.

scholarly journals Issues with Romance in the Workplace Environment

2022 ◽  
Vol 14 (2) ◽  
pp. 41-50
Author(s):  
Amanda Murray
Keyword(s):  
Sexual Harassment ◽  
Daily Basis ◽  
Major Effect ◽  
Negative Effects ◽  
Workplace Environment ◽  
Job Productivity ◽  
Workplace Environments ◽  
Workplace Policies ◽  
Divided Subject ◽  
A Company

Due to the increased interaction between coworkers on a daily basis, studies show there is a direct correlation with romance that stems from the workplace. While there can be benefits, this paper will show how romances in the workplace can result in negative effects on the workplace environments through a multitude of ways. Workplace Romances deal with issues originating from hierarchal relationships, including sexual harassment and favouritism, which further impacts job productivity and morale. The existence of these forms of relationships may be unavoidable, yet they can also be damaging to a company when relationships become unsuccessful. Workplace Romances can have a major effect on coworkers, including tension and conflict. Workplace policies are a divided subject, as they could perhaps prevent issues, while at the same time, they may create further issues.

scholarly journals Molecular-Marker-Facilitated Investigations of Quantitative-Trait Loci in Maize. I. Numbers, Genomic Distribution and Types of Gene Action

Genetics ◽  
1987 ◽  
Vol 116 (1) ◽  
pp. 113-125
Author(s):  
M D Edwards ◽  
C W Stuber ◽  
J F Wendel
Keyword(s):  
Quantitative Trait Loci ◽  
Phenotypic Variation ◽  
Quantitative Trait ◽  
Quantitative Traits ◽  
Gene Action ◽  
Individual Plant ◽  
Gene Effects ◽  
Individual Gene ◽  
Trait Loci ◽  
Marker Loci

ABSTRACT Individual genetic factors which underlie variation in quantitative traits of maize were investigated in each of two F2 populations by examining the mean trait expressions of genotypic classes at each of 17–20 segregating marker loci. It was demonstrated that the trait expression of marker locus classes could be interpreted in terms of genetic behavior at linked quantitative trait loci (QTLs). For each of 82 traits evaluated, QTLs were detected and located to genomic sites. The numbers of detected factors varied according to trait, with the average trait significantly influenced by almost two-thirds of the marked genomic sites. Most of the detected associations between marker loci and quantitative traits were highly significant, and could have been detected with fewer than the 1800–1900 plants evaluated in each population. The cumulative, simple effects of marker-linked regions of the genome explained between 8 and 40% of the phenotypic variation for a subset of 25 traits evaluated. Single marker loci accounted for between 0.3% and 16% of the phenotypic variation of traits. Individual plant heterozygosity, as measured by marker loci, was significantly associated with variation in many traits. The apparent types of gene action at the QTLs varied both among traits and between loci for given traits, although overdominance appeared frequently, especially for yield-related traits. The prevalence of apparent overdominance may reflect the effects of multiple QTLs within individual marker-linked regions, a situation which would tend to result in overestimation of dominance. Digenic epistasis did not appear to be important in determining the expression of the quantitative traits evaluated. Examination of the effects of marked regions on the expression of pairs of traits suggests that genomic regions vary in the direction and magnitudes of their effects on trait correlations, perhaps providing a means of selecting to dissociate some correlated traits. Marker-facilitated investigations appear to provide a powerful means of examining aspects of the genetic control of quantitative traits. Modifications of the methods employed herein will allow examination of the stability of individual gene effects in varying genetic backgrounds and environments.

scholarly journals Genetic control of resistance to gray leaf spot of maize in tropical germplasm

2012 ◽  
Vol 12 (2) ◽  
pp. 145-150 ◽  
Author(s):  
André Humberto de Brito ◽  
Livia Maria Chamma Davide ◽  
Renzo Garcia Von Pinho ◽  
Rafael Pelloso de Carvalho ◽  
Matheus Costa dos Reis
Keyword(s):  
Genetic Control ◽  
Leaf Spot ◽  
Genetic Model ◽  
Block Design ◽  
Gray Leaf Spot ◽  
Cercospora Leaf Spot ◽  
Gene Effects ◽  
Randomized Block Design ◽  
Tropical Germplasm ◽  
Plant Level

The main goal of this study was to assess the nature and magnitude of gene effects for resistance to Cercospora leaf spot. A randomized block design with three replications was used. The data were obtained at the plant level by assessing the disease severity. The data were analyzed per experiment, using the average data per plot. A dominant-additive genetic model without epistasis was considered, with estimation of the components of means and variance. The genetic control of resistance to gray leaf spot is polygenic with predominance of the additive effects. Dominance was observed in a few small-effect loci and high heritability values.

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