scholarly journals Genome-wide analysis and comparison of the DNA-binding one zinc finger gene family in diploid and tetraploid cotton (Gossypium)

PLoS ONE ◽  
2020 ◽  
Vol 15 (6) ◽  
pp. e0235317
Author(s):  
YuZhe Li ◽  
Zhen Liu ◽  
KaiYue Zhang ◽  
SenYi Chen ◽  
MengJie Liu ◽  
...  
Keyword(s):  
Dna Binding ◽  
Gene Family ◽  
Zinc Finger ◽  
Tetraploid Cotton ◽  
Zinc Finger Gene ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula

2013 ◽  
Vol 32 (10) ◽  
pp. 1543-1555 ◽  
Author(s):  
Cuiqin Zhang ◽  
Hongmei Zhang ◽  
Yang Zhao ◽  
Haiyang Jiang ◽  
Suwen Zhu ◽  
...  
Keyword(s):  
Gene Family ◽  
Zinc Finger ◽  
Medicago Truncatula ◽  
Zinc Finger Gene ◽  
Genome Wide Analysis ◽  
Ccch Zinc Finger ◽  
Genome Wide

Comprehensive analysis of CCCH-type zinc finger gene family in citrus (Clementine mandarin) by genome-wide characterization

2014 ◽  
Vol 289 (5) ◽  
pp. 855-872 ◽  
Author(s):  
Shengrui Liu ◽  
Muhammad Rehman Gul Khan ◽  
Yongping Li ◽  
Jinzhi Zhang ◽  
Chungen Hu
Keyword(s):  
Gene Family ◽  
Zinc Finger ◽  
Comprehensive Analysis ◽  
Zinc Finger Gene ◽  
Genome Wide

scholarly journals Genome-wide study of C2H2 zinc finger gene family in Medicago truncatula

2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Zhicheng Jiao ◽  
Liping Wang ◽  
Huan Du ◽  
Ying Wang ◽  
Weixu Wang ◽  
...  
Keyword(s):  
Gene Family ◽  
Zinc Finger ◽  
Medicago Truncatula ◽  
Zinc Finger Gene ◽  
C2h2 Zinc Finger ◽  
Genome Wide ◽  
Genome Wide Study

Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis

2007 ◽  
Vol 65 (4) ◽  
pp. 467-485 ◽  
Author(s):  
Pinky Agarwal ◽  
Rita Arora ◽  
Swatismita Ray ◽  
Ashok K. Singh ◽  
Vijay P. Singh ◽  
...  
Keyword(s):  
Gene Family ◽  
Zinc Finger ◽  
Expression Analysis ◽  
Zinc Finger Gene ◽  
C2h2 Zinc Finger ◽  
Genome Wide

scholarly journals Genome-wide analysis and expression characterization of zinc finger homeodomain (ZHD) family genes responsed to different abiotic stresses and hormonal treatments in grape (Vitis vinifera L.)

2020 ◽  
Author(s):  
Guojie Nai ◽  
Juan Mao ◽  
Shixiong Lu ◽  
Yanmei Li ◽  
Zonghuan Ma ◽  
...  
Keyword(s):  
Gene Family ◽  
Zinc Finger ◽  
Defense Mechanisms ◽  
Treatment Time ◽  
Expression Profiles ◽  
Vitis Vinifera L ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Expression Characterization

Abstract Background Zinc finger homeodomain (ZHD) proteins transcription factors (TFs) family occupy a crucial role in regulating plant growth and development. The ZHD TFs family had been studied in diverse organisms such as humans, Drosophila, nematode worms and plants. Especially in plants there is an extensive exploration involved in photosynthesis, defense mechanisms and responses to stress. In this further research, we will provide a better understanding of the ZHD gene family in grape. Results In this study, a total of 12 VvZHD genes were identified from the Grape Genome. The exploration of detailed bioinformatics found that the full length of VvZHD genes ranges from 150 bp (base pair) to 26706 bp, isoelectric points (pIs) were 6.25–9.68, molecular weights (MWs) ranged from 10.28 kilodaltons (KDa) to 97.93 kDa. Also, analysis of phylogenetic evolution showed there existed a common ancestor between Arabidopsis and grape. Ka (Nonsynonymous) / Ks (Synonymous) was lower than 1 and strong collinearity showed there were tandem duplications of genes between Arabidopsis and grape. Codon bias levels of ZHD gene family were relatively higher overall. Gene chip data analysis of cabernet sauvignon seedlings showed VvZHD genes had different expression under different time of different treatments, and with the prolongation of treatment time, most of VvZHD genes were slightly downregulated. The qRT-PCR was carried out under different hormones and stresses to verify expression profiles in grape roots and leaves. Results revealed that most VvZHD genes had higher expressions in roots but lower expressions in leaves. Also, most of the VvZHD gene members were responsed with high expressions after the treatment of ABA, IAA and MeJA in roots. However, VvZHD9, VvZHD11 and VvZHD12 were highly expressed by inducing of PEG in leaves. Conclusions Through genome-wide analysis and expression characterization of ZHD family genes, results showed 12 members had the diversity of function, structure and unique expression characterization under various abiotic stress and hormone treatments. This study will provide us with a newer insight on ZHD gene family of grape and promote to explore the biological functions of ZHD genes in other plants.

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