The Phylogenetic relationship study of Maturase K and Ribulose 1,5 bisphosphate carboxylase/oxygenase large subunit – A DNA barcoding marker region of Medicinal plant Beetroot (Beta vulgaris) from the region of Gujarat (INDIA)

Author(s):  
Shubham S Bumb ◽  
Sanjay Lal ◽  
Sandeep Chovatiya
2021 ◽  
Vol 908 (1) ◽  
pp. 012030
Author(s):  
M V Protopopova ◽  
N A Shvetsova ◽  
V V Pavlichenko

Abstract The methods of biological species identification using nucleotide sequences of short genome regions (DNA barcoding) are actively developed. The universal DNA barcode for plants remains to be discovered, and one of the leading candidates is the plastid gene of the large subunit of ribulose-bisphosphate carboxylase gene (rbcL). In our study, we estimated the part of rbcL gene as a possible marker for molecular identification of Rhaponticum carthamoides (Willd.) Iljin. Due to its officinal properties, the species is susceptible to uncontrolled and illegal harvesting from natural populations. Today, the species needs to be protected and therefore is included into the Red Data Books of the Russian Federation and certain regions. The study was carried out using plants from the natural populations sampled from the Khamar-Daban Ridge (South Siberia) and considering now as Rh. carthamoides var. chamarense (Peschkova) O S Zhirova. It was shown that rbcL gene can be used to identify Rh. carthamoides at least from the populations of the Khamar-Daban Ridge using a fragment of the maximum length or its 3’ region. Apparently, the 5’ region of the gene (rbcLa) most often used as DNA barcode for plants may be of lesser importance for Rh. carthamoides. The rbcL gene sequences can be also used for the development of approaches for Rh. carthamoides identification in the medicinal preparations and products containing dried tissues to prevent their falsification and illegal harvesting of this species. The combination of rbcL gene with additional markers seems to be highly desirable to create effective DNA barcodes for Rhaponticum species.


1976 ◽  
Vol 3 (1) ◽  
pp. 93 ◽  
Author(s):  
T Akazawa ◽  
CB Osmond

Ribulosebisphosphate carboxylase/oxygenase activity was detected in Halimeda cylindracea and Chaetomorpha crassa. In H. cylindracea carboxylase activity (72-250 micromoles CO2 fixed per hour per milligram chlorophyll) was sufficient to account for measured photosynthetic rates. The activity of the oxygenase was only 1 % that of the carboxylase but otherwise both enzymes showed properties similar to those of the same enzymes in higher green plants. Fraction-1 protein from H. cylindracea was purified to a homogeneous state as tested by poly- acrylamide gel electrophoresis at pH 8.9. The activity of the ribulose-1,5-bisphosphate carboxylase in the purified preparations was 0.1 micromoles CO2 fixed per minute per milligram protein (pH 7.0). The H. cylindracea fraction-1 protein was shown to comprise two subunits, A and B, with molecular weights 5.4 × 104, and 1.35 x 104, respectively, typical of the plant-type ribulose-1,5-bisphosphate carboxylase. The amino acid composition of the large subunit A was similar to that from spinach and Chlorella enzymes, whereas that of the subunit B was markedly distinguishable from the enzymes of other origins. The close resemblance of the H. cylindricea protein to the plant enzymes was further supported by the formation of a spur in the double immunodiffusion precipitation line, indicating probable existence of sequence-homology of the catalytic larger subunit A, typical of the plant-type enzyme molecules.


Plant Omics ◽  
2020 ◽  
pp. 65-77
Author(s):  
Heba El-Sayed Ghareb ◽  
Shafik Darwish Ibrahim ◽  
Ghada Abd El-Moneim Hegazi

Saint Katherine is considered a “biodiversity hotspot” because of the high level of endemism of reported plant species. In this study, conservation of the endangered endemic plant; Phlomis aurea of Saint Katherine, Southern Sinai, Egypt, was carried out through micropropagation and DNA barcoding. The first efficient micropropagation protocol for Phlomis aurea was established as a mean of ex situ conservation of the plant. Shoot tips and nodal segments of in vitro germinated seedlings were established on Murashige and Skoog medium supplemented with 0.54 µM β-naphthalene acetic acid (NAA) and 2.46 µM N6-(2-isopentenyl) adenine (2iP) in combination with 6-benzylaminopurine (BA) or kinetin (Kin). The medium supplemented with 3.48 µM Kin considered optimum for both explants. For multiplication, BA was the most efficient cytokinin. The percentage of rooted explants reached 100% at the concentration of 14.7 µM indolebutyric acid (IBA), whereas the highest number of roots was recorded for 4.90 µM, which considered the optimum concentration with a percentage of 80% of rooting. Rooted plantlets were transplanted in the greenhouse with 75% survival rate. The present study also aimed to carry out DNA barcoding of Phlomis aurea for accurate identification to provide a database for establishing an efficient conservation program for the plant. Three chloroplast DNA markers were used [ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL), maturase K (matK) and RNA polymerase C1 (rpoC1)] and all were successful in amplifying target regions, however the performance of both rbcL and matK markers seemed to be species‐specific. The similarity percentage was maximum for rbcL (99.81%) and matK (100%) compared to the database of the same species.


1983 ◽  
Vol 3 (4) ◽  
pp. 587-595 ◽  
Author(s):  
K K Oishi ◽  
K K Tewari

mRNA coding for the large subunit (LS) of ribulose-1,5-bisphosphate carboxylase was obtained by fractionating chloroplast polysomes on an affinity column, using anti-ribulose-1,5-bisphosphate carboxylase immunoglobulin G. Approximately 20% of the polysomal RNA specifically bound to the affinity column. LS mRNA was also isolated by fractionating chloroplast polysomal RNA on sucrose gradients. The LS mRNA fraction was identified by translation in vitro followed by immunoprecipitation with anti-ribulose-1,5-bisphosphate carboxylase immunoglobulin G. Labeled LS mRNA was hybridized to a genomic digests of pea chloroplast DNA. The LS gene was localized on a 3.55-kilobase pair BamHI fragment in SalI-SmaI DNA fragment 4. The BamHI fragment containing the LS gene was cloned, and a restriction endonuclease map was constructed. The LS gene was localized on a 1.9-kbp KpnI-EcoRI fragment. The LS gene was analyzed by electron microscopy, using the R loop mapping technique. LS mRNA was colinear with the gene, and its size was 1.35 +/- 0.2 kilobase pairs. When the LS mRNA was analyzed on methylmercury agarose gels, it comigrated with the 16S rRNA. The direction of transcription of the LS gene was in the same direction as that of the rRNA genes.


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