scholarly journals Relaxometric learning: a pattern recognition method for T2 relaxation curves based on machine learning supported by an analytical framework

2020 ◽  
Author(s):  
Yasuhiro Date ◽  
Feifei Wei ◽  
Yuuri Tsuboi ◽  
Kengo Ito ◽  
Kenji Sakata ◽  
...  

Abstract Nuclear magnetic resonance (NMR)-based relaxometry is widely used in various fields of research because of its advantages such as simple sample preparation, easy handling, and relatively low cost compared with metabolomics approaches. However, there have been no reports on the application of the T2 relaxation curves in metabolomics studies involving the evaluation of metabolic mixtures, such as geographical origin determination and feature extraction by pattern recognition and data mining. In this study, we describe a data mining method for relaxometric data (i.e., relaxometric learning). This method is based on a machine learning algorithm supported by the analytical framework optimized for the relaxation curve analyses. In the analytical framework, we incorporated a variable optimization approach and bootstrap resampling-based matrixing to enhance the classification performance and balance the sample size between groups, respectively. The relaxometric learning enabled the extraction of features related to the physical properties of fish muscle and the determination of the geographical origin of the fish by improving the classification performance. Our results suggest that relaxometric learning is a powerful and versatile alternative to conventional metabolomics approaches for evaluating fleshiness of chemical mixtures in food and for other biological and chemical research requiring a nondestructive, cost-effective, and time-saving method.

BMC Chemistry ◽  
2021 ◽  
Vol 15 (1) ◽  
Author(s):  
Yasuhiro Date ◽  
Feifei Wei ◽  
Yuuri Tsuboi ◽  
Kengo Ito ◽  
Kenji Sakata ◽  
...  

AbstractNuclear magnetic resonance (NMR)-based relaxometry is widely used in various fields of research because of its advantages such as simple sample preparation, easy handling, and relatively low cost compared with metabolomics approaches. However, there have been no reports on the application of the T2 relaxation curves in metabolomics studies involving the evaluation of metabolic mixtures, such as geographical origin determination and feature extraction by pattern recognition and data mining. In this study, we describe a data mining method for relaxometric data (i.e., relaxometric learning). This method is based on a machine learning algorithm supported by the analytical framework optimized for the relaxation curve analyses. In the analytical framework, we incorporated a variable optimization approach and bootstrap resampling-based matrixing to enhance the classification performance and balance the sample size between groups, respectively. The relaxometric learning enabled the extraction of features related to the physical properties of fish muscle and the determination of the geographical origin of the fish by improving the classification performance. Our results suggest that relaxometric learning is a powerful and versatile alternative to conventional metabolomics approaches for evaluating fleshiness of chemical mixtures in food and for other biological and chemical research requiring a nondestructive, cost-effective, and time-saving method.


2020 ◽  
Author(s):  
Yasuhiro Date ◽  
Feifei Wei ◽  
Yuuri Tsuboi ◽  
Kengo Ito ◽  
Kenji Sakata ◽  
...  

Abstract Nuclear magnetic resonance (NMR)-based relaxometry is widely used in various fields of research because of its advantages such as simple sample preparation, easy handling, and relatively low cost compared with metabolomics approaches. However, there have been no reports on the application of the T2 relaxation curves in metabolomics studies involving the evaluation of metabolic mixtures, such as geographical origin determination and feature extraction by pattern recognition and data mining. In this study, we describe a data mining method for relaxometric data (i.e., relaxometric learning). This method is based on a machine learning algorithm supported by the analytical framework optimized for the relaxation curve analyses. In the analytical framework, we incorporated a variable optimization approach and bootstrap resampling-based matrixing to enhance the classification performance and balance the sample size between groups, respectively. The relaxometric learning enabled the extraction of features related to the physical properties of fish muscle and the determination of the geographical origin of the fish by improving the classification performance. Our results suggest that relaxometric learning is a powerful and versatile alternative to conventional metabolomics approaches for evaluating fleshiness of chemical mixtures in food and for other biological and chemical research requiring a nondestructive, cost-effective, and time-saving method.


2020 ◽  
Author(s):  
Yasuhiro Date ◽  
Feifei Wei ◽  
Yuuri Tsuboi ◽  
Kengo Ito ◽  
Kenji Sakata ◽  
...  

Abstract Nuclear magnetic resonance (NMR)-based relaxometry is widely used in various fields of research because of its advantages such as simple sample preparation, easy handling, and relatively low cost compared with metabolomics approaches. However, there have been no reports on the application of the T 2 relaxation curves in metabolomics studies involving the evaluation of metabolic mixtures, such as geographical origin determination and feature extraction by pattern recognition and data mining. In this study, we describe a data mining method for relaxometric data (i.e., relaxometric learning). This method is based on a machine learning algorithm supported by the analytical framework optimized for the relaxation curve analyses. In the analytical framework, we incorporated a variable optimization approach and bootstrap resampling-based matrixing to enhance the classification performance and balance the sample size between groups, respectively. The relaxometric learning enabled the extraction of features related to the physical properties of fish muscle and the determination of the geographical origin of the fish by improving the classification performance. Our results suggest that relaxometric learning is a powerful and versatile alternative to conventional metabolomics approaches for evaluating fleshiness of chemical mixtures in food and for other biological and chemical research requiring a nondestructive, cost-effective, and time-saving method.


2021 ◽  
Vol 1088 (1) ◽  
pp. 012035
Author(s):  
Mulyawan ◽  
Agus Bahtiar ◽  
Githera Dwilestari ◽  
Fadhil Muhammad Basysyar ◽  
Nana Suarna

In today’s world social media is one of the most important tool for communication that helps people to interact with each other and share their thoughts, knowledge or any other information. Some of the most popular social media websites are Facebook, Twitter, Whatsapp and Wechat etc. Since, it has a large impact on people’s daily life it can be used a source for any fake or misinformation. So it is important that any information presented on social media should be evaluated for its genuineness and originality in terms of the probability of correctness and reliability to trust the information exchange. In this work we have identified the features that can be helpful in predicting whether a given Tweet is Rumor or Information. Two machine learning algorithm are executed using WEKA tool for the classification that is Decision Tree and Support Vector Machine.


Minerals ◽  
2019 ◽  
Vol 9 (6) ◽  
pp. 376 ◽  
Author(s):  
Qiubing Ren ◽  
Mingchao Li ◽  
Shuai Han ◽  
Ye Zhang ◽  
Qi Zhang ◽  
...  

Geochemical discrimination of basaltic magmatism from different tectonic settings remains an essential part of recognizing the magma generation process within the Earth’s mantle. Discriminating among mid-ocean ridge basalt (MORB), ocean island basalt (OIB) and island arc basalt (IAB) is that matters to geologists because they are the three most concerned basalts. Being a supplement to conventional discrimination diagrams, we attempt to utilize the machine learning algorithm (MLA) for basalt tectonic discrimination. A combined MLA termed swarm optimized neural fuzzy inference system (SONFIS) was presented based on neural fuzzy inference system and particle swarm optimization. Two geochemical datasets of basalts from GEOROC and PetDB served as to test the classification performance of SONFIS. Several typical discrimination diagrams and well-established MLAs were also used for performance comparisons with SONFIS. Results indicated that the classification accuracy of SONFIS for MORB, OIB and IAB in both datasets could reach over 90%, superior to other methods. It also turns out that MLAs had certain advantages in making full use of geochemical characteristics and dealing with datasets containing missing data. Therefore, MLAs provide new research tools other than discrimination diagrams for geologists, and the MLA-based technique is worth extending to tectonic discrimination of other volcanic rocks.


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