1SE1100 Dynamical reaction mechanisms of hybrid ribozyme/protein catalyst revealed by using ab initio computer simulations(1SE Recent Advances in Structural Analyses of Funcitonal Mechanisms Based on Dynamics of Biological Reactions,The 48th Annual Meeting of the Biophysical Society of Japan)

Masaru Tateno

doi:10.2142/biophys.50.s4_1

1SE1100 Dynamical reaction mechanisms of hybrid ribozyme/protein catalyst revealed by using ab initio computer simulations(1SE Recent Advances in Structural Analyses of Funcitonal Mechanisms Based on Dynamics of Biological Reactions,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s4_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S4

Author(s):

Masaru Tateno

Keyword(s):

Ab Initio ◽

Annual Meeting ◽

Computer Simulations ◽

Reaction Mechanisms ◽

Recent Advances ◽

Biophysical Society

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3P291 Development of an "ab initio" identification system of transcriptional factor binding motifs in genome DNA sequences(Genome biology: Genome analysis,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s196_6 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S196-S197

Author(s):

Ryoh Nakaki ◽

Masaru Tateno

Keyword(s):

Ab Initio ◽

Annual Meeting ◽

Dna Sequences ◽

Genome Analysis ◽

Transcriptional Factor ◽

Genome Biology ◽

Identification System ◽

Binding Motifs ◽

Factor Binding ◽

Biophysical Society

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1B1424 P35 Computer Simulations Reveal Proton Transfer Pathways in Nitric Oxide Reductases(Membrane Proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s31_4 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S31

Author(s):

Andrei Pisliakov ◽

Yuji Sugita

Keyword(s):

Nitric Oxide ◽

Membrane Proteins ◽

Proton Transfer ◽

Annual Meeting ◽

Computer Simulations ◽

Biophysical Society

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1P026 MD and ab initio MO simulations on transcriptional mechanism controlled by lactose repressor protein and ligand(Protein: Structure & Function,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s145_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S145

Author(s):

Matsushita Yuki ◽

Shimamura Kanako ◽

Oishi Masato ◽

Ohyama Tatsuya ◽

Kurita Noriyuki

Keyword(s):

Protein Structure ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Repressor Protein ◽

Lactose Repressor ◽

Biophysical Society ◽

Ab Initio Mo

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2SC1013 Theoretical analysis for structures and reaction mechanisms of atypical cytochrome P450(2SC Structure and Function of Weak Interaction in Metalloproteins-Protein Field and Highly Organized Specific Reaction,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s10_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S10

Author(s):

Seiji Mori

Keyword(s):

Cytochrome P450 ◽

Theoretical Analysis ◽

Annual Meeting ◽

Weak Interaction ◽

Reaction Mechanisms ◽

Structure And Function ◽

Specific Reaction ◽

Biophysical Society ◽

And Function

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2P029 Ab initio fragment molecular orbital calculations on specific interactions between butylcholinesterase and its inhibitors(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s199_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S199

Author(s):

Takeru Murakawa ◽

Tomoya Suzuki ◽

Tareq Khan ◽

Noriyuki Kurita

Keyword(s):

Protein Structure ◽

Structure Function ◽

Ab Initio ◽

Annual Meeting ◽

Molecular Orbital ◽

Molecular Orbital Calculations ◽

Specific Interactions ◽

Fragment Molecular Orbital ◽

Biophysical Society

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1SE0940 Reaction mechanism of cytochrome c oxidase based on the O_2 analogues-bound structures(1SE Recent Advances in Structural Analyses of Funcitonal Mechanisms Based on Dynamics of Biological Reactions,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s3_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S3

Author(s):

Kazumasa Muramoto ◽

Tomoko Maeda ◽

Kyoko Shinzawa-Itoh ◽

Eiki Yamashita ◽

Tomitake Tsukihara ◽

...

Keyword(s):

Reaction Mechanism ◽

Cytochrome C ◽

Cytochrome C Oxidase ◽

Annual Meeting ◽

Recent Advances ◽

Biophysical Society

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2P140 Protein-Inhibitor Binding Enthalpy Calculation with ab initio Fragment Molecular Orbital Method(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s107_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S107

Author(s):

Hiroh Miyagawa ◽

Mayumi Endo

Keyword(s):

Ab Initio ◽

Annual Meeting ◽

Molecular Orbital ◽

Orbital Method ◽

Molecular Orbital Method ◽

Protein Inhibitor ◽

Inhibitor Binding ◽

Fragment Molecular Orbital ◽

Biophysical Society ◽

Binding Enthalpy

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3S4-6 The water splitting enzyme : recent advances(3S4 New trend of photosynthesis =New energy innovation based on the photosynthesis=,The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s18_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S18

Author(s):

Alain Boussac

Keyword(s):

Annual Meeting ◽

Water Splitting ◽

Recent Advances ◽

Biophysical Society ◽

New Energy ◽

Energy Innovation

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1SE1020 Genetic code extension and establishment by aminoacyl-tRNA synthetase and tRNA modification enzymes(1SE Recent Advances in Structural Analyses of Funcitonal Mechanisms Based on Dynamics of Biological Reactions,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s3_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S3

Author(s):

Kotaro Nakanishi ◽

Luc Bonnefond ◽

Kayo Nozawa ◽

Dieter Soll ◽

Tsutomu Suzuki ◽

...

Keyword(s):

Genetic Code ◽

Annual Meeting ◽

Trna Synthetase ◽

Trna Modification ◽

Aminoacyl Trna Synthetase ◽

Recent Advances ◽

Biophysical Society ◽

Code Extension

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1P106 Evaluating the impact of charged residues in proton channel Hv1 by computer simulations(03.Membrane proteins,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s123_4 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S123

Author(s):

Matsuyuki Shirota ◽

Susumu Chiba ◽

Kota Kasahara ◽

Hiroko Kondo ◽

Kengo Kinoshita

Keyword(s):

Membrane Proteins ◽

Annual Meeting ◽

Computer Simulations ◽

Proton Channel ◽

Biophysical Society ◽

Charged Residues ◽

The Impact

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