Synthesis of Novel α-amidino Carboxylic Acids and their Use as H-Bond Catalysts in Strecker Reaction

2018 ◽  
Vol 21 (8) ◽  
pp. 609-614
Author(s):  
Zahra Zaghari ◽  
Javad Azizian

Aim and Objective: A wide variety of synthesized amidine derivatives are bioactive compounds. They show a vast range of medical properties. Therefore, a simple route for synthesis of novel class of amidine derivatives called amidino carboxylic acids and their use as catalysts in Strecker reaction has been reported in the current work. The stability, local charge density and hydrogen bond parameters were calculated for eight derivatives with different substituents. Materials and Methods: In order to synthesize these amidino carboxylic acids, we initially prepared Knovenogel condensation products via the reaction of isatin derivatives with malonitrile. When the reaction was performed in water, the resulting nitrile groups of malonitrile derivatives was hydrolyzed with HOAC/ H2SO4 to generate the desired amide groups. The amide groups in resulting compound converted to amine groups with two Hoffman rearrangements in the presence of NaOH/Br2. Further neutralization led to the final zwitterionic α-amidino carboxylic acids. In the next step, the catalytic activity of these compounds as H-bond donor catalyst was investigated in Strecker reaction. Results: The overall yields of the derivatives with substituent on the aromatic ring of starting isatins are higher than that for the overall yields of nitrogen-substituted isatins. The reaction of 5-nitro isatin with the next reagent gives lower yield in aryl-substituted products. An increase of catalytic activity is observed by rising the electron-withdrawing power of the aromatic ring substituents., The presence of nitro group in the structure of catalyst caused a large increase of catalytic activity in Strecker reaction. DFT calculations at B3LYP/6-31++g(d,p) and Lanl2dz level of theory showed that these compounds act as single H-bond catalysts and higher yields were obtained for complexes with stronger hydrogen bond. Conclusion: A simple and efficient method for synthesis of ɑ-amidino carboxylic acids was developed in this research. These compounds have been used as a single H-bond donor catalyst in the Strecker reaction. DFT calculations were carried out to confirm the experimental results. The obtained data from computations are in good agreement with experimental results.

Catalysts ◽  
2019 ◽  
Vol 9 (6) ◽  
pp. 504 ◽  
Author(s):  
Yi Yu ◽  
Yuxue Yue ◽  
Bolin Wang ◽  
Haihua He ◽  
Zhong-Ting Hu ◽  
...  

We studied the acetylene hydrochlorination in gas–liquid phase reactions using ionic liquids (IL) as the reaction media and CuCl2 as the catalyst. The Cu-IL catalyst showed strong synergy between the IL and the Cu(II) active catalytic species. For [PrMIm]Cl, the Cu-IL catalyst exhibited significant enhancement of the catalytic activity in comparison with the CuCl2 catalyst supported on activated carbon and the IL alone as the catalyst. We have also performed DFT calculations of the reaction process, which provides a good explanation of our experimental results and for the synergetic effect. Our result suggests that ILs may be used to improve the activity of other metallic catalysts for the hydrochlorination reaction of acetylene.


2015 ◽  
Vol 44 (29) ◽  
pp. 13141-13155 ◽  
Author(s):  
Virginia San Nacianceno ◽  
Susan Azpeitia ◽  
Lourdes Ibarlucea ◽  
Claudio Mendicute-Fierro ◽  
Antonio Rodríguez-Diéguez ◽  
...  

Stereoselectivity assisted by hydrogen bond formation, inhibited by steric hindrance, predicted by DFT calculations.


2019 ◽  
Vol 57 (4) ◽  
pp. 449
Author(s):  
Trung Tien Nguyen ◽  
Tri Ngoc Nguyen ◽  
Dai Quoc Ho

We investigated the adsorption of enrofloxacin (ENR) antibiotic on rutile-TiO2 (r-TiO2­) (110) surface using DFT calculations. Stable configurations of the adsorption of ENR on r-TiO2 (110) were observed. The origin and role of interactions in stablizing the configurations are thoroughly analyzed using NBO and AIM analyses. Obtained results indicate that the adsorption process is characterized as a strong chemisorption with an associated energy of ca. -35.1 kcal.mol-1 for the most stable configuration. Quantum chemical analysis shows that the stability of configurations is mainly determined by >C=O∙∙∙Ti5f electrostatic interaction along with supplement of H∙∙∙Ob hydrogen bond.


2015 ◽  
Vol 71 (9) ◽  
pp. 1812-1823 ◽  
Author(s):  
Yamuna Kalyani Mathiharan ◽  
H. S. Savithri ◽  
M. R. N. Murthy

The survival protein SurE fromSalmonella typhimurium(StSurE) is a dimeric protein that functions as a phosphatase. SurE dimers are formed by the swapping of a loop with a pair of β-strands and a C-terminal helix between two protomers. In a previous study, the Asp230 and His234 residues were mutated to Ala to abolish a hydrogen bond that was thought to be crucial for C-terminal helix swapping. These mutations led to functionally inactive and distorted dimers in which the two protomers were related by a rotation of 167°. New salt bridges involving Glu112 were observed in the dimeric interface of the H234A and D230A/H234A mutants. To explore the role of these salt bridges in the stability of the distorted structure, E112A, E112A/D230A, E112A/H234A, E112A/D230A/H234A, R179L/H180A/H234A and E112A/R179L/H180A/H234A mutants were constructed. X-ray crystal structures of the E112A, E112A/H234A and E112A/D230A mutants could be determined. The dimeric structures of the E112A and E112A/H234A mutants were similar to that of native SurE, while the E112A/D230A mutant had a residual rotation of 11° between theBchains upon superposition of theAchains of the mutant and native dimers. The native dimeric structure was nearly restored in the E112A/H234A mutant, suggesting that the new salt bridge observed in the H234A and D230A/H234A mutants was indeed responsible for the stability of their distorted structures. Catalytic activity was also restored in these mutants, implying that appropriate dimeric organization is necessary for the activity of SurE.


2020 ◽  
Author(s):  
Nadia Balucani ◽  
Pedro Recio ◽  
Demian Marchione ◽  
Adriana Caracciolo ◽  
Piergiorgio Casavecchia

<p>Pyridine is a heterocyclic aromatic molecule of gross formula C<sub>5</sub>H<sub>5</sub>N where the N atom is included in the aromatic ring. The molecule as such is not abundant in nature, but its derivatives are often part of important biomolecules. For instance, it is one of the basic units in the nicotinamide adenine dinucleotide, NADH, which is an essential reducing agent in various biological processes. Interestingly, pyridine derivatives (e.g. 2,4,6-trimethylpyridine and pyridine carboxylic acids) were identified in carbonaceous chondrites [1-4] along with many other molecules of biological significance. In addition to that, nicotinonitrile (3-cyanopyridine) as well as 2- and 4-cyanopyridine have been synthesized in a version of the Miller experiment by the action of electric discharges on ethylene and ammonia, with an intermediate step being the synthesis of pyridine [5]. The possibility that nicotinonitrile hydrolyzed in the primitive ocean to nicotinamide and nicotinic acid reinforces the prebiotic potential of pyridine.</p> <p>In conclusion, either formed locally on Earth from simple precursors or brought by extraterrestrial carriers, the presence of pyridine or of one of its derivatives could have played an important role in the organic chemistry that triggered the origin of life on Earth. Pyridine formation can also be seen as an intermediate step towards the formation of pyrimidine (C<sub>4</sub>H<sub>4</sub>N<sub>2</sub>), a species constituting the molecular skeleton of important nucleobases (cytosine, uracil and thymine). Pyridine and pyrimidine are also expected to share similarities in their chemical behavior because of the presence of N in the aromatic ring in the place of one (pyridine) or two (pyrimidine) methine groups (=CH−).</p> <p>For the above reasons, in our laboratory we have undertaken a systematic experimental investigation to address pyridine stability in the conditions of primitive Earth. In a first series of experiments, we have exposed isolated pyridine molecules to the attack of very reactive species, namely atomic oxygen and nitrogen. The aim is to verify whether the N-containing aromatic ring of pyridine is preserved after the chemical attack of reactive transient species like O and N atoms that might have been relatively abundant under the conditions of primitive Earth when the O<sub>2</sub>/O<sub>3</sub> UV shield was not present yet. The employed experimental technique is the one described in Ref. [6]. The implications for the stability of pyridine and its derivatives, or of other molecules for which pyridine can be considered as a proxy, will be noted.</p> <p>The Authors wish to thank the Italian Space Agency for co-funding the <span class="markrnqlbh7dn" data-markjs="true" data-ogac="" data-ogab="" data-ogsc="" data-ogsb="">Life</span> in Space project (<span class="markn33axkulf" data-markjs="true" data-ogac="" data-ogab="" data-ogsc="" data-ogsb="">ASI</span> N. 2019-3-U.0).</p> <p> </p> <p>[1] P. G.Stoks, A. W. Schwartz. Basic nitrogen-heterocyclic compounds in the Murchison meteorite. Geochimica et Cosmochimica Acta 46, 309-315 (1982).</p> <p>[2] Y. Yamashita, H. Naraoka. Two homologous series of alkylpyridines in the Murchison meteorite. Geochemical Journal 48, 519-525, (2014).</p> <p>[3] S. Pizzarello, Y. Huang, L. Becker, R. J. Poreda, R. A. Nieman, G. Cooper, M. Williams. The Organic Content of the Tagish Lake Meteorite. Science 293, 2236- 2239 (2001).</p> <p>[4] K. E. Smith, M. P. Callahan, P. A. Gerakines, J. P. Dworkin, C. H. House. Investigation of pyridine carboxylic acids in CM2 carbonaceous chondrites: Potential precursor molecules for ancient coenzymes. Geochimica et Cosmochimica Acta 136, 1–12 (2014).</p> <p>[5] N. Friedmann, S. L. Miller, R. A. Sanchez. Primitive Earth Synthesis of Nicotinic Acid Derivatives. Science Vol. 171, 1026-1027 (1971).</p> <p>[6] N. Balucani. Elementary reactions of N atoms with hydrocarbons: first steps towards the formation of prebiotic N-containing molecules in planetary atmospheres. Chem. Soc. Rev. 41, 5473–5483 (2012).</p>


2008 ◽  
Vol 64 (3) ◽  
pp. 401-403 ◽  
Author(s):  
Angelo Gavezzotti

In a study of 101 crystal structures of carboxylic acids we have observed a clear trend in the difference between the formally single and formally double C—O bond distances, as observed by X-ray diffraction, with a clear-cut distinction between aromatic acids, where the two distances are similar, and non-aromatic acids, where the two distances distinctly differ by 0.06–0.12 Å. A tentative energy classification – within the limits of the many assumptions – and a correlation with the O...O separation over the hydrogen bond indicate that the stability of the carboxylic acid dimer increases as the difference between the two apparent C—O distances becomes smaller, owing to an increasing Coulombic contribution to the dimerization energy. No simple hypothesis is adequate for a complete explanation of the origin, of the details and of the variations of this phenomenon. As often happens in crystal chemistry problems, one is presumably confronted with a balance of several subtle intra- and intermolecular factors.


2021 ◽  
Author(s):  
Jeremy Guaramato ◽  
Franmerly Fuentes ◽  
Rocío Rivera-Campos ◽  
Deivi Oliveros ◽  
José R. Mora ◽  
...  

<p>A copper(I) complex [CuCl{<i>k</i><sup>1</sup>(P)-<b>1a</b>}{k<sup>2</sup>(P,N)-<b>1a</b>}] (<b>1a</b> = 2,5-bis(2-pyridyl)-1-phenylphosphole) with pseudo tetrahedral geometry was synthesized. In solution, <b>1a</b> displays a hemilabile behaviour leading to a dynamic equilibrium between four and three-coordinate specie. Its catalytic potential was tested in synthesis of propargylamines and 1,2,3-triazoles via three-component reactions. <a>Experimental results discussed on base to DFT calculations. </a></p>


2021 ◽  
Author(s):  
Jeremy Guaramato ◽  
Franmerly Fuentes ◽  
Rocío Rivera-Campos ◽  
Deivi Oliveros ◽  
José R. Mora ◽  
...  

<p>A copper(I) complex [CuCl{<i>k</i><sup>1</sup>(P)-<b>1a</b>}{k<sup>2</sup>(P,N)-<b>1a</b>}] (<b>1a</b> = 2,5-bis(2-pyridyl)-1-phenylphosphole) with pseudo tetrahedral geometry was synthesized. In solution, <b>1a</b> displays a hemilabile behaviour leading to a dynamic equilibrium between four and three-coordinate specie. Its catalytic potential was tested in synthesis of propargylamines and 1,2,3-triazoles via three-component reactions. <a>Experimental results discussed on base to DFT calculations. </a></p>


2014 ◽  
Vol 59 (6) ◽  
Author(s):  
Rebecca Wilhelm ◽  
Istabrak Hasan ◽  
Ludger Keilig ◽  
Friedhelm Heinemann ◽  
Helmut Stark ◽  
...  

AbstractThe use of short implants has increased widely within the last years. However, the stability of these implants has not yet been comprehensively investigated, in particular the difference in geometry and dimension of short implants. The aim of the present study was to investigate experimentally the difference of the secondary stability of different commercial short implants by measuring their displacements. Eleven implant geometries were investigated in this study. A total of 22 implants were inserted in porcine rib segments, two implants for each system. Implant displacements were measured using a self-developed biomechanical hexapod measurement system (HexMeS). The highest displacement was observed with Straumann BL NC 3.3×8.0 mm (266 μm), followed by Straumann Standard 4.1×6.0 mm (156 μm), while the lowest displacement of 61 μm was shown by Dentaurum type 1 implant (4.2×5.0 mm). No obvious difference of displacements was observed between hammered and screw-shaped implants with relevant dimensions. The experimental results were in good agreement with the numerical ones (19–42%) for Dentaurum implants. However, a difference of 70–80% was obtained for the Astra implant (4.0×6.0 mm) and Bicon implant (6.0×5.7 mm). The geometry of short implants directly affects their stability within the bone.


2019 ◽  
Vol 22 (2) ◽  
pp. 88-93
Author(s):  
Hamed Khanger Mina ◽  
Waleed K. Al-Ashtrai

This paper studies the effect of contact areas on the transient response of mechanical structures. Precisely, it investigates replacing the ordinary beam of a structure by two beams of half the thickness, which are joined by bolts. The response of these beams is controlled by adjusting the tightening of the connecting bolts and hence changing the magnitude of the induced frictional force between the two beams which affect the beams damping capacity. A cantilever of two beams joined together by bolts has been investigated numerically and experimentally. The numerical analysis was performed using ANSYS-Workbench version 17.2. A good agreement between the numerical and experimental results has been obtained. In general, results showed that the two beams vibrate independently when the bolts were loosed and the structure stiffness is about 20 N/m and the damping ratio is about 0.008. With increasing the bolts tightening, the stiffness and the damping ratio of the structure were also increased till they reach their maximum values when the tightening force equals to 8330 N, where the structure now has stiffness equals to 88 N/m and the damping ratio is about 0.062. Beyond this force value, increasing the bolts tightening has no effect on stiffness of the structure while the damping ratio is decreased until it returned to 0.008 when the bolts tightening becomes immense and the beams behave as one beam of double thickness.


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