scholarly journals Genetic Relationships Between Commercially Produced and Natural Populations of Bombus Terrestris Dalmatinus in Terms of Mitochondrial COI and CytB

2021 ◽  
Vol 65 (2) ◽  
pp. 315-330
Author(s):  
Kemal Karabağ ◽  
Emel Tüten Sevim ◽  
Şadiye Taşbaş
Keyword(s):  
High Frequency ◽  
Bombus Terrestris ◽  
Genetic Relationships ◽  
Natural Populations ◽  
Genetic Variations ◽  
Commercial Production ◽  
Bumble Bees ◽  
Natural Habitats ◽  
Mitochondrial Coi ◽  
Different Populations

Abstract Bombus terrestris dalmatinus is naturally common in many countries, including Turkey, and is also used commercially for the pollination of greenhouse plants. Intensive commercial production and international trade in many countries are considered as reasons for the disappearance of some natural populations. Hybridization of native bumble bees with those produced commercially, but having escaped from greenhouses and colonization of these commercial bees in natural habitats are cause for concern. In order to assess this concern, B. t. dalmatinus workers were collected from twelve different populations: five commercial producers, three surrounding greenhouse centers, three natural areas at least 30 km away from greenhouses, and one more recent greenhouse zone in Antalya, Turkey. The genetic variations and relationships among the twelve populations were estimated using SNP haplotypes determined in mitochondrial COI and CytB. Twenty and sixteen haplotypes were obtained for COI and CytB, respectively. A single haplotype, H1, was widespread with a high frequency in all individuals for both genes. Individuals collected from around greenhouse centers and commercial companies had more common haplotypes. The genetic variations of intra-populations were higher than the interpopulations in both COI (65.41%>34.59%) and CytB (72.47%>27.53%). The natural and commercial populations were genetically more distant from each other considering Fst values. However, samples from near the greenhouses had a higher similarity with the commercially produced samples, while the natural populations far away from greenhouses still retained their genetic distinctiveness.

scholarly journals iPBS polymorphism of rare relict and endangered Allium species growing on the territory of Kazakhstan Altai

2020 ◽  
Vol 200 (9) ◽  
pp. 63-73
Author(s):  
Olesya Rayzer ◽  
Oksana Hapilina
Keyword(s):  
Genetic Diversity ◽  
Molecular Genetic ◽  
Natural Populations ◽  
Dna Amplification ◽  
Practical Significance ◽  
Primer Binding Site ◽  
Natural Habitats ◽  
Allium Species ◽  
Different Populations ◽  
High Level

Abstract. The purpose of the study. The estimation of genetic polymorphism of Kazakhstan populations of rare relict and endemic Allium species. The novelty of the research is the use of the modern molecular genetic iPBS (Inter- Primer Binding Site Polymorphism) method of DNA amplification to assess the genetic diversity of different populations of Allium sp., collected in their natural habitats in the Kazakhstan Altai. Methods. Samples of medicinal relict and endangered species A. ledebourianum, A. altaicum, A. microdiction were collected in the places of their natural growth in the territory of the Kazakhstan Altai. DNA was isolated from 3–5 day sterile seedlings using lysis STAB buffer with RNaseA. PBS primers were used to assess the genetic diversity of different populations of Allium spp. The amplification results obtained using different PBS primers were evaluated in the GenAlex 6.5 macro program for Excel. Results. The polymorphism of 16 genotypes of the rare relict and endangered Allium sp. was analyzed using 7 PBS primers. Clearly distinguishable amplicons were obtained, the number of which varied depending on the primer used. The dendrogram, based on UPGMA analysis, grouped the studied genotypes into 2 main clusters, one of which included samples from the A. altaicum population, and the second cluster included samples from the A. ledebourianum population. A. microdiction represented by one sample did not enter any cluster, and formed a basal branch in the dendrogram. The results of the study have revealed a high degree of iPBS polymorphism and genetic diversity in rare relict and endangered Allium sp. Practical significance. The use of the molecular genetic iPBS method allows to identify a high level of polymorphism, which can serve as a basis for the identification of various genotypes of the Allium sp., which will significantly supplement traditional preservation methods of natural populations of this genus.

scholarly journals Morphobiochemical Variability and Selection Strategies for the Germplasm of Dactylorhiza hatagirea (D. Don) Soo: An Endangered Medicinal Orchid

2014 ◽  
Vol 2014 ◽  
pp. 1-5
Author(s):  
R. S. Chauhan ◽  
M. C. Nautiyal ◽  
R. K. Vashistha ◽  
P. Prasad
Keyword(s):  
Crop Improvement ◽  
Natural Populations ◽  
Natural Habitats ◽  
Improvement Program ◽  
Medicinal Uses ◽  
Alpine Regions ◽  
Selection Strategies ◽  
Different Populations ◽  
Medicinal Orchid ◽  
Endangered Medicinal Herb

Dactylorhiza hatagirea (D. Don) Soo (Orchidaceae) is an important endangered medicinal herb, distributed in subalpine to alpine regions of the Himalayas. Its tubers are important constituents of many medicines and health tonics. Overexploitation for medicinal uses has decreased availability in natural habitats and this species has been enlisted as endangered, making conservation and cultivation studies necessary. Variability studies may serve as an important tool for effective conservation and for a crop improvement program. Therefore, natural populations of D. hatagirea were analyzed for variability on the basis of morphological, biochemical, and isoenzyme patterns. The studied populations were grouped into two clusters. Existing variability among different populations opens up new areas for conservation and perspectives for a genetic improvement program for D. hatagirea.

Relevance of the genetic structure of natural populations, and sampling and classification approaches for conservation and use of wild crop relatives: potato as an example

Botany ◽  
2012 ◽  
Vol 90 (11) ◽  
pp. 1065-1072 ◽  
Author(s):  
Elsa L. Camadro
Keyword(s):  
Genetic Structure ◽  
Genetic Relationships ◽  
Sustainable Use ◽  
Natural Populations ◽  
Crop Wild Relatives ◽  
Ex Situ ◽  
Gene Frequencies ◽  
Natural Habitats ◽  
Allelic Frequencies ◽  
Essential Components

Crop wild relatives (CWRs) are wild taxa with close genetic relationships to species with direct socioeconomic importance. As essential components of natural habitats and agricultural systems, their conservation and sustainable use are vital. CWRs are ex situ conserved in germplasm banks as samples of natural populations (accessions). Most accessions have been assigned specific status according to the Taxonomic Species Concept, which presupposes that living organisms are at the end of speciation. Thus, the morphological and genetic variability that could be encountered in natural populations is disregarded, negatively affecting conservation of allelic frequencies and effective use in breeding. Passport information usually contains collection date and geographical data, but not reproductive behavior of the sampled population (which defines its genetic structure) and sampling strategies. For ex situ multiplications of original collections, no information is provided on the effectively used strategies. As information on how accessions were composed is lacking, conservation of the allelic frequencies from the originally sampled populations is unknown. Knowledge of reproductive biology of plant populations is of utmost importance to understanding their natural morphological and molecular variability and to developing appropriate methodological approaches for sampling, classifying, and ex situ multiplying to conserve gene frequencies for basic and applied purposes.

scholarly journals Olfactory coding in the antennal lobe of the bumble bee Bombus terrestris

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Marcel Mertes ◽  
Julie Carcaud ◽  
Jean-Christophe Sandoz
Keyword(s):  
Honey Bees ◽  
Antennal Lobe ◽  
Bombus Terrestris ◽  
Bumble Bees ◽  
Foraging Strategies ◽  
Bumble Bee ◽  
Carbon Chain Length ◽  
Olfactory Coding ◽  
Major Transitions

AbstractSociality is classified as one of the major transitions in evolution, with the largest number of eusocial species found in the insect order Hymenoptera, including the Apini (honey bees) and the Bombini (bumble bees). Bumble bees and honey bees not only differ in their social organization and foraging strategies, but comparative analyses of their genomes demonstrated that bumble bees have a slightly less diverse family of olfactory receptors than honey bees, suggesting that their olfactory abilities have adapted to different social and/or ecological conditions. However, unfortunately, no precise comparison of olfactory coding has been performed so far between honey bees and bumble bees, and little is known about the rules underlying olfactory coding in the bumble bee brain. In this study, we used in vivo calcium imaging to study olfactory coding of a panel of floral odorants in the antennal lobe of the bumble bee Bombus terrestris. Our results show that odorants induce reproducible neuronal activity in the bumble bee antennal lobe. Each odorant evokes a different glomerular activity pattern revealing this molecule’s chemical structure, i.e. its carbon chain length and functional group. In addition, pairwise similarity among odor representations are conserved in bumble bees and honey bees. This study thus suggests that bumble bees, like honey bees, are equipped to respond to odorants according to their chemical features.

scholarly journals Genetic Diversity of Salvia Species Assessed by ISSR and RAPD Markers

2016 ◽  
Vol 44 (2) ◽  
pp. 431-436 ◽  
Author(s):  
Masoumeh YOUSEFIAZARKHANIAN ◽  
Ali ASGHARI ◽  
Jafar AHMADI ◽  
Behvar ASGHARI ◽  
Ali Ashraf JAFARI
Keyword(s):  
Genetic Diversity ◽  
Genetic Polymorphisms ◽  
Genomic Dna ◽  
Rapd Markers ◽  
Genetic Relationships ◽  
Genetic Variations ◽  
Molecular Techniques ◽  
Wild Populations ◽  
Similarity Coefficients ◽  
The World

The genus Salvia includes an enormous assemblage of nearly 1,000 species dispersed around the world. Due to possible threats to this genus, there is an immediate requirement to evaluate the diversity of its wild populations. ISSR and RAPD molecular techniques were used to evaluate the genetic relationships among twenty-one ecotypes of eight Salvia species. Amplification of genomic DNA using 23 primers (15 RAPD and eight ISSR) produced 280 bands, of which 91% were polymorphic. The results of marker parameters showed no clear difference between two marker systems. It was generally observed that both ISSR and RAPD markers had similar efficiency in detecting genetic polymorphisms with remarkable ability to differentiate the closely related ecotypes of Salvia. Nei’s similarity coefficients for these techniques ranged from 0.48 to 0.98. Based on the results of clustering, PCoA and AMOVA, the genetic diversity between and within species was confirmed. So, conservation and domestication of the genus Salvia must be due to levels of genetic variations.

scholarly journals Parasite variation and the evolution of virulence in a Daphnia-microparasite system

Parasitology ◽  
2007 ◽  
Vol 135 (3) ◽  
pp. 303-308 ◽  
Author(s):  
T. J. LITTLE ◽  
W. CHADWICK ◽  
K. WATT
Keyword(s):  
Genetic Variation ◽  
Rank Order ◽  
Genetic Relationships ◽  
Natural Populations ◽  
Host Genotype ◽  
Relative Growth ◽  
Trade Off ◽  
Relative Growth Rates ◽  
Pasteuria Ramosa ◽  
Evolution Of Virulence

SUMMARYUnderstanding genetic relationships amongst the life-history traits of parasites is crucial for testing hypotheses on the evolution of virulence. This study therefore examined variation between parasite isolates (the bacterium Pasteuria ramosa) from the crustacean Daphnia magna. From a single wild-caught infected host we obtained 2 P. ramosa isolates that differed substantially in the mortality they caused. Surprisingly, the isolate causing higher early mortality was, on average, less successful at establishing infections and had a slower growth rate within hosts. The observation that within-host replication rate was negatively correlated with mortality could violate a central assumption of the trade-off hypothesis for the evolution of virulence, but we discuss a number of caveats which caution against premature rejection of the trade-off hypothesis. We sought to test if the characteristics of these parasite isolates were constant across host genotypes in a second experiment that included 2 Daphnia host clones. The relative growth rates of the two parasite isolates did indeed depend on the host genotype (although the rank order did not change). We suggest that testing evolutionary hypotheses for virulence may require substantial sampling of both host and parasite genetic variation, and discuss how selection for virulence may change with the epidemiological state of natural populations and how this can promote genetic variation for virulence.

scholarly journals Inversion polymorphism in some natural populations of Drosophila pseudoobscura from central Mexico

Genetika ◽  
2007 ◽  
Vol 39 (3) ◽  
pp. 343-354 ◽  
Author(s):  
Víctor Salceda ◽  
Judith Guzmán ◽  
Olga Olvera
Keyword(s):  
Relative Frequency ◽  
Polytene Chromosomes ◽  
Natural Populations ◽  
Chromosomal Polymorphism ◽  
Drosophila Pseudoobscura ◽  
Central Mexico ◽  
The Third ◽  
Grand Total ◽  
Different Populations ◽  
Single Larva

Samples of D. pseudoobscura were taken in seventeen localities in Central Mexico inside the parallels 18o - 20o N, with the purpose of determine the chromosomal polymorphism in the third of the different populations of this species. From each captured female a single larva of its offspring was taken, its salivary glands extracted and stained with a solution of aceto orcein to observe the polytene chromosomes. From these smears the corresponding karyotype of each larva was determined, keeping a record of them. With the information gathered the relative frequency of each one of the fourteen different inversions found was calculated. A grand total of 1894 third chromosomes were analyzed. The fourteen different inversions found are equivalent to a 34.1 % of the total chromosomal variation of the species. The most abundant inversions found were: TL 50.6 %, CU 27.2 5, SC 9.1 % and EP 5.5 %; the remaining ten inversions detected are in general grounds rare ones with variable relative frequencies depending on the locality. Analysis of the predominant inversions for each population was done. The presence of West-East gradients is reported, even if in cases not so well defined, since as one moves in a particular direction the ups and downs in relative frequency for the alternating pairs TL-CU; TL-SC in the western populations and TL-CU in the eastern ones were observed. The assignment of each population to a particular race was also done, and such a way we were able to recognize three different races coexisting in the area of study.

scholarly journals STATISTICAL STUDIES ON PROTEIN POLYMORPHISM IN NATURAL POPULATIONS II. GENE DIFFERENTIATION BETWEEN POPULATIONS

Genetics ◽  
1978 ◽  
Vol 88 (2) ◽  
pp. 367-390
Author(s):  
Ranajit Chakraborty ◽  
Paul A Fuerst ◽  
Masatoshi Nei
Keyword(s):  
Genetic Differentiation ◽  
Natural Populations ◽  
Drift Theory ◽  
Alternative Hypotheses ◽  
Mean And Variance ◽  
Statistical Studies ◽  
Different Populations ◽  
Using Data ◽  
Almost All ◽  
Good Agreement

ABSTRACT With the aim of testing the validity of the mutation-drift hypothesis, we examined the pattern of genetic differentiation between populations by using data from Drosophila, fishes, reptiles, and mammals. The observed relationship between genetic identity and correlation of heterozygosities of different populations or species was generally in good agreement with the theoretical expectations from the mutation-drift theory, when the variation in mutation rate among loci was taken into account. In some species of Drosophila, however, the correlation was unduly high. The relationship between the mean and variance of genetic distance was also in good agreement with the theoretical prediction in almost all organisms. We noted that both the distribution of heterozygosity within species and the pattern of genetic differentiation between species can be explained by the same set of genetic parameters in each group of organisms. Alternative hypotheses for explaining these observations are discussed.

scholarly journals Micro-geographic variation of inversions in natural populations of Drosophila pseudoobscura

Genetika ◽  
2006 ◽  
Vol 38 (2) ◽  
pp. 97-105 ◽  
Author(s):  
Víctor Salceda ◽  
José Espinoza-Velazquez
Keyword(s):  
Geographic Variation ◽  
Population Sample ◽  
Polytene Chromosomes ◽  
Natural Populations ◽  
Chromosomal Polymorphism ◽  
Drosophila Pseudoobscura ◽  
Natural Habitats ◽  
San Luis ◽  
San Luis Potosi ◽  
San Luis Potosí

Chromosomal polymorphism for the third chromosome in Drosophila pseudoobscura has been widely studied for genetic variation in different environments or locations far apart. However, there is less information regarding sites geographically near one another. Targeting on possible micro-geographic variation in the species, a serial study was done on 12 Mexican populations grouped in four regions, including locations in Durango (DU), the border area of Guanajuato-San Luis Potosi states (GP), Chiapas (CH) and Saldilo (SA). Flies were trapped in their natural habitats using fermenting bananas as bait. They were individually cultivated in the laboratory for larvae production. In a given population sample several flies were cultivated together but only one larva per culture provided salivary tissue to observe polytene chromosomes. Gene arrangements or inversions were identified and frequencies were calculated. A total of 767 third chromosomes were studied and 11 different inversions detected. The type and relative frequencies of the arrangements varied among regions. From the 11 inversions observed, 10 were found in Durango, five in Guanajuato-San Luis Potosi and Chiapas, and eight in Saltillo. The inversion frequencies in the Durango locations varied in four cases, but only one in Chiapas, three cases in Guanajuato-San Luis Potosi, and five in Saltillo. It was also observed that there were geographical gradients for inversions within regions as follows: four arrangements in Saltillo and Durango, three in Guanajuato-San Luis Potos? and one in Chiapas. Moreover, all four regions studied showed evidences for micro-geographical variation. Nevertheless, more studies are needed to elucidate the relevance of the inversion frequencies changes in neighboring populations and also any seasonal-annual frequencies observed in the locations studied here.

scholarly journals Male and female reproductive success in natural and anthropogenic populations of Malaxis monophyllos (L.) Sw. (Orchidaceae)

2015 ◽  
Vol 39 (1) ◽  
pp. 37-44 ◽  
Author(s):  
Edyta Jermakowicz ◽  
Beata Ostrowiecka ◽  
Izabela Tałałaj ◽  
Artur Pliszko ◽  
Agata Kostro-Ambroziak
Keyword(s):  
Reproductive Success ◽  
Fruit Set ◽  
Natural Populations ◽  
Floral Display ◽  
Natural Habitats ◽  
Female Reproductive Success ◽  
Male And Female ◽  
Demographic Processes ◽  
Preliminary Study ◽  
Effective Pollinators

Abstract In the presented study, male and female reproductive success was analyzed in relation to the population size, floral display and pollinators’ availability in natural and anthropogenic populations of the orchid Malaxis monophyllos (L.) Sw. Our results indicated significant differences between all investigated populations in parameters of floral display, including heights and number of flowers per inflorescence, as well the number of flowering individuals and their spatial structure. Additionally, populations differed both in male (pollinia removal) and female (fruit set) reproductive success, but only the fruit set clearly differentiated anthropogenic and natural populations. Despite the average flower number per plant being significantly higher in two of the anthropogenic populations, it was not related to the fruits set, which was significantly lower there. Moreover, our preliminary study concerning the potential pollinators of M. monophyllos showed a higher contribution of flies in natural habitats than in anthropogenic ones. Thus, we can suspect that the main factors influencing the level of female reproductive success in M. monophyllos populations are abundance of effective pollinators, as well as flower visitors, which may have resulted in a different level of pollen discounting in populations. Therefore, further studies concerning breeding system and pollination as important forces that shape demographic processes in M. monophyllos populations are necessary. Our results also indicate that suitable conservation methods in M. monophyllos should always include the preservation of potential pollinators, especially in these new, secondary habitats.

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