scholarly journals Excited State Dynamics of 7-Deazaguanosine and Guanosine 5’ Monophosphate in Aqueous Solution

2020 ◽  
Author(s):  
Sarah E. Krul ◽  
Sean J. Hoehn ◽  
Karl Feierabend ◽  
Carlos Crespo-Hernández
Keyword(s):  
Aqueous Solution ◽  
Excited State ◽  
Potential Energy Surfaces ◽  
Internal Conversion ◽  
Transient Absorption ◽  
Relaxation Mechanism ◽  
Transient Absorption Spectroscopy ◽  
Experimental Conditions ◽  
Excited State Dynamics ◽  
Computational Calculations

Minor structural modifications to the DNA and RNA nucleobases have a significant effect on their excited state dynamics and electronic relaxation pathways.<b> </b>In this study, the excited state dynamics of 7-deazaguanosine and guanosine 5’-monophosphate are investigated in aqueous solution using femtosecond broadband transient absorption spectroscopy following excitation at 267 nm. The transient absorption spectra are collected under experimental conditions that eliminate the requirement to correct the data for the formation of hydrated electrons, resulting from the two-photon ionization of the solvent. The data is fitted satisfactorily using a two-component sequential kinetic model, yielding lifetimes of 210 ± 50 fs and 1.80 ± 0.02 ps, and 682 ± 40 fs and 1.4 ± 0.03 ps, for 7-deazaguanosine and guanosine 5’-monophosphate, respectively. By analyzing the results from steady-state, time-resolved, and computational calculations, the following relaxation mechanism is proposed for 7-deazaguanosine, S<sub>2</sub>(L<sub>b</sub>) ® S<sub>1</sub>(L<sub>a</sub>) ® S<sub>0</sub>, whereas a S<sub>2</sub>(L<sub>b</sub>) ® S<sub>1</sub>(L<sub>a</sub>) ® S<sub>0</sub>(hot)<sub> </sub>® S<sub>0 </sub>relaxation mechanism<sub> </sub>is proposed for guanosine 5’-monophosphate. Interestingly, longer lifetimes for both the L<sub>b</sub> ® L<sub>a</sub> and the L<sub>a</sub> ® S<sub>0</sub> internal conversion pathways are obtained for 7-deazaguanosine compare to guanosine 5’-monophosphate. Collectively, the results demonstrate that substitution of a single nitrogen for a methine (C-H) group at position seven of the guanine moiety stabilizes the <sup>1</sup>pp* L<sub>b</sub> and L<sub>a</sub> states and alters the topology of their potential energy surfaces in such a way that the population dynamics of both internal conversion pathways in 7-deazaguanosine are significantly slowed down compared to those in guanosine 5’-monophosphate.

scholarly journals Excited State Dynamics of 7-Deazaguanosine and Guanosine 5’ Monophosphate

2021 ◽  
Author(s):  
Sarah E. Krul ◽  
Sean J. Hoehn ◽  
Karl Feierabend ◽  
Carlos Crespo-Hernández
Keyword(s):  
Excited State ◽  
Ground State ◽  
Internal Conversion ◽  
Transient Absorption ◽  
Transient Absorption Spectroscopy ◽  
Water Mixture ◽  
Relaxation Dynamics ◽  
Similar Time ◽  
Excited State Dynamics ◽  
Computational Calculations

<p>Minor structural modifications to the DNA and RNA nucleobases have a significant effect on their excited state dynamics and electronic relaxation pathways.<b> </b>In this study, the excited state dynamics of 7-deazaguanosine and guanosine 5’-monophosphate are investigated in aqueous and in a mixture of methanol and water using femtosecond broadband transient absorption spectroscopy following excitation at 267 nm. The transient spectra are collected using photon densities that ensure no parasitic multiphoton-induced signal from solvated electrons. The data can be fit satisfactorily using a two- or three-component kinetic model. By analyzing the results from steady-state, time-resolved, computational calculations, and the methanol-water mixture, the following general relaxation mechanism is proposed for both molecules, L<sub>b</sub> ® L<sub>a</sub> ® <sup>1</sup>ps*(ICT) ® S<sub>0</sub>, where the <sup>1</sup>ps*(ICT) stands for an intramolecular charge transfer excited singlet state with significant ps* character. In general, longer lifetimes for internal conversion are obtained for 7-deazaguanosine compared to guanosine 5’-monophosphate. Internal conversion of the <sup>1</sup>ps*(ICT) state to the ground state occurs on a similar time scale of a few picoseconds in both molecules. Collectively, the results demonstrate that substitution of a single nitrogen for a methine (C-H) group at position seven of the guanine moiety stabilizes the <sup>1</sup>pp* L<sub>b</sub> and L<sub>a</sub> states and alter the topology of their potential energy surfaces in such a way that the relaxation dynamics in 7-deazaguanosine are slowed down compared to those in guanosine 5’-monophosphate but not for the internal conversion of <sup>1</sup>ps*(ICT) state to the ground state.</p>

scholarly journals Excited State Dynamics of 7-Deazaguanosine and Guanosine 5’ Monophosphate

2021 ◽  
Author(s):  
Sarah E. Krul ◽  
Sean J. Hoehn ◽  
Karl Feierabend ◽  
Carlos Crespo-Hernández
Keyword(s):  
Excited State ◽  
Ground State ◽  
Internal Conversion ◽  
Transient Absorption ◽  
Transient Absorption Spectroscopy ◽  
Water Mixture ◽  
Relaxation Dynamics ◽  
Similar Time ◽  
Excited State Dynamics ◽  
Computational Calculations

<p>Minor structural modifications to the DNA and RNA nucleobases have a significant effect on their excited state dynamics and electronic relaxation pathways.<b> </b>In this study, the excited state dynamics of 7-deazaguanosine and guanosine 5’-monophosphate are investigated in aqueous and in a mixture of methanol and water using femtosecond broadband transient absorption spectroscopy following excitation at 267 nm. The transient spectra are collected using photon densities that ensure no parasitic multiphoton-induced signal from solvated electrons. The data can be fit satisfactorily using a two- or three-component kinetic model. By analyzing the results from steady-state, time-resolved, computational calculations, and the methanol-water mixture, the following general relaxation mechanism is proposed for both molecules, L<sub>b</sub> ® L<sub>a</sub> ® <sup>1</sup>ps*(ICT) ® S<sub>0</sub>, where the <sup>1</sup>ps*(ICT) stands for an intramolecular charge transfer excited singlet state with significant ps* character. In general, longer lifetimes for internal conversion are obtained for 7-deazaguanosine compared to guanosine 5’-monophosphate. Internal conversion of the <sup>1</sup>ps*(ICT) state to the ground state occurs on a similar time scale of a few picoseconds in both molecules. Collectively, the results demonstrate that substitution of a single nitrogen for a methine (C-H) group at position seven of the guanine moiety stabilizes the <sup>1</sup>pp* L<sub>b</sub> and L<sub>a</sub> states and alter the topology of their potential energy surfaces in such a way that the relaxation dynamics in 7-deazaguanosine are slowed down compared to those in guanosine 5’-monophosphate but not for the internal conversion of <sup>1</sup>ps*(ICT) state to the ground state.</p>

Excited-State Dynamics in the RNA Nucleotide Uridine 5’-Monophosphate Investigated by Femtosecond Broadband Transient Absorption Spectroscopy

2019 ◽  
Author(s):  
Matthew M. Brister ◽  
Carlos Crespo-Hernández
Keyword(s):  
Excited State ◽  
Excited States ◽  
Ground State ◽  
Transient Absorption ◽  
Electronic Energy ◽  
Transient Absorption Spectroscopy ◽  
Electronic Relaxation ◽  
Vibrationally Excited ◽  
Excited State Dynamics ◽  
Π State

<p></p><p> Damage to RNA from ultraviolet radiation induce chemical modifications to the nucleobases. Unraveling the excited states involved in these reactions is essential, but investigations aimed at understanding the electronic-energy relaxation pathways of the RNA nucleotide uridine 5’-monophosphate (UMP) have not received enough attention. In this Letter, the excited-state dynamics of UMP is investigated in aqueous solution. Excitation at 267 nm results in a trifurcation event that leads to the simultaneous population of the vibrationally-excited ground state, a longlived <sup>1</sup>n<sub>O</sub>π* state, and a receiver triplet state within 200 fs. The receiver state internally convert to the long-lived <sup>3</sup>ππ* state in an ultrafast time scale. The results elucidate the electronic relaxation pathways and clarify earlier transient absorption experiments performed for uracil derivatives in solution. This mechanistic information is important because long-lived nπ* and ππ* excited states of both singlet and triplet multiplicities are thought to lead to the formation of harmful photoproducts.</p><p></p>

Investigation of ultrafast excited state dynamics of 2,2′,4,4′,6,6′-hexanitrostilbene using femtosecond transient absorption spectroscopy

RSC Advances ◽  
2014 ◽  
Vol 4 (104) ◽  
pp. 60382-60385 ◽  
Author(s):  
Genbai Chu ◽  
Min Shui ◽  
Ying Xiong ◽  
Jing Yi ◽  
Kemei Cheng ◽  
...  
Keyword(s):  
Excited State ◽  
Excited States ◽  
Absorption Spectroscopy ◽  
Transient Absorption ◽  
Transient Absorption Spectroscopy ◽  
Excited State Dynamics ◽  
Femtosecond Transient Absorption ◽  
Femtosecond Transient Absorption Spectroscopy

A study on the dynamics and structures of the excited states of 2,2′,4,4′,6,6′-hexanitrostilbene shows equilibrium between vibrationally hot S1 (S*1) and S1 states with lifetimes of 0.8 and 6 ps, respectively.

Ultrafast Z → E photoisomerisation of structurally modified furylfulgides

2014 ◽  
Vol 16 (36) ◽  
pp. 19556-19563 ◽  
Author(s):  
Falk Renth ◽  
Ron Siewertsen ◽  
Frank Strübe ◽  
Jochen Mattay ◽  
Friedrich Temps
Keyword(s):  
Excited State ◽  
Absorption Spectroscopy ◽  
Transient Absorption ◽  
Transient Absorption Spectroscopy ◽  
Chemical Modifications ◽  
Structural Motifs ◽  
Excited State Dynamics ◽  
Femtosecond Transient Absorption ◽  
Femtosecond Transient Absorption Spectroscopy

Femtosecond transient absorption spectroscopy of Z-fulgides with selected structural motifs revealed fast and direct excited-state dynamics independent of chemical modifications.

scholarly journals Ultrafast excited state dynamics of nonfluorescent cyclopheophorbide-aenol, a catabolite of chlorophyll-adetoxified in algae-feeding aquatic microbes

2019 ◽  
Vol 18 (1) ◽  
pp. 64-70 ◽  
Author(s):  
Chikashi Ota ◽  
Keita Sugihara ◽  
Yusuke Kinoshita ◽  
Yuichiro Kashiyama ◽  
Yutaka Nagasawa ◽  
...  
Keyword(s):  
Excited State ◽  
Absorption Spectroscopy ◽  
Intermediate State ◽  
Transient Absorption ◽  
Transient Absorption Spectroscopy ◽  
Nonradiative Decay ◽  
Excited State Dynamics ◽  
Aquatic Microbes

Transient absorption spectroscopy revealed that a catabolite of chlorophyll-a, cPPB-aE, undergoes ultrafast nonradiative decay through an intermediate state.

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