scholarly journals Best Practices for Artificial Intelligence in Life Sciences Research

2020 ◽  
Author(s):  
Vladimir Makarov ◽  
Terry Stouch ◽  
Brandon Allgood ◽  
Christopher Willis ◽  
Nick Lynch

We describe 11 best practices for the successful use of Artificial Intelligence and Machine Learning in the pharmaceutical and biotechnology research, on the data, technology, and organizational management levels.

2020 ◽  
Vol 3 (1) ◽  
pp. 61-87 ◽  
Author(s):  
Theodore Alexandrov

Spatial metabolomics is an emerging field of omics research that has enabled localizing metabolites, lipids, and drugs in tissue sections, a feat considered impossible just two decades ago. Spatial metabolomics and its enabling technology—imaging mass spectrometry—generate big hyperspectral imaging data that have motivated the development of tailored computational methods at the intersection of computational metabolomics and image analysis. Experimental and computational developments have recently opened doors to applications of spatial metabolomics in life sciences and biomedicine. At the same time, these advances have coincided with a rapid evolution in machine learning, deep learning, and artificial intelligence, which are transforming our everyday life and promise to revolutionize biology and healthcare. Here, we introduce spatial metabolomics through the eyes of a computational scientist, review the outstanding challenges, provide a look into the future, and discuss opportunities granted by the ongoing convergence of human and artificial intelligence.


2019 ◽  
Vol 76 (6) ◽  
pp. 1681-1690 ◽  
Author(s):  
Alexander Winkler-Schwartz ◽  
Vincent Bissonnette ◽  
Nykan Mirchi ◽  
Nirros Ponnudurai ◽  
Recai Yilmaz ◽  
...  

Author(s):  
Vladimir A. Makarov ◽  
Terry Stouch ◽  
Brandon Allgood ◽  
Chris D. Willis ◽  
Nick Lynch

2020 ◽  
Vol 3 (1) ◽  
Author(s):  
Sujay Kakarmath ◽  
Andre Esteva ◽  
Rima Arnaout ◽  
Hugh Harvey ◽  
Santosh Kumar ◽  
...  

Abstract Since its inception in 2017, npj Digital Medicine has attracted a disproportionate number of manuscripts reporting on uses of artificial intelligence. This field has matured rapidly in the past several years. There was initial fascination with the algorithms themselves (machine learning, deep learning, convoluted neural networks) and the use of these algorithms to make predictions that often surpassed prevailing benchmarks. As the discipline has matured, individuals have called attention to aberrancies in the output of these algorithms. In particular, criticisms have been widely circulated that algorithmically developed models may have limited generalizability due to overfitting to the training data and may systematically perpetuate various forms of biases inherent in the training data, including race, gender, age, and health state or fitness level (Challen et al. BMJ Qual. Saf. 28:231–237, 2019; O’neil. Weapons of Math Destruction: How Big Data Increases Inequality and Threatens Democracy, Broadway Book, 2016). Given our interest in publishing the highest quality papers and the growing volume of submissions using AI algorithms, we offer a list of criteria that authors should consider before submitting papers to npj Digital Medicine.


2021 ◽  
Vol 44 (2) ◽  
pp. 104-114
Author(s):  
Bernhard G. Humm ◽  
Hermann Bense ◽  
Michael Fuchs ◽  
Benjamin Gernhardt ◽  
Matthias Hemmje ◽  
...  

AbstractMachine intelligence, a.k.a. artificial intelligence (AI) is one of the most prominent and relevant technologies today. It is in everyday use in the form of AI applications and has a strong impact on society. This article presents selected results of the 2020 Dagstuhl workshop on applied machine intelligence. Selected AI applications in various domains, namely culture, education, and industrial manufacturing are presented. Current trends, best practices, and recommendations regarding AI methodology and technology are explained. The focus is on ontologies (knowledge-based AI) and machine learning.


2020 ◽  
Vol 12 (1) ◽  
Author(s):  
Igor V. Tetko ◽  
Ola Engkvist

Abstract The increasing volume of biomedical data in chemistry and life sciences requires development of new methods and approaches for their analysis. Artificial Intelligence and machine learning, especially neural networks, are increasingly used in the chemical industry, in particular with respect to Big Data. This editorial highlights the main results presented during the special session of the International Conference on Neural Networks organized by “Big Data in Chemistry” project and draws perspectives on the future progress of the field. Graphical Abstract


2022 ◽  
Vol 22 (2) ◽  
pp. 1-29
Author(s):  
Becky Allen ◽  
Andrew Stephen McGough ◽  
Marie Devlin

Artificial Intelligence and its sub-disciplines are becoming increasingly relevant in numerous areas of academia as well as industry and can now be considered a core area of Computer Science [ 84 ]. The Higher Education sector are offering more courses in Machine Learning and Artificial Intelligence than ever before. However, there is a lack of research pertaining to best practices for teaching in this complex domain that heavily relies on both computing and mathematical knowledge. We conducted a literature review and qualitative study with students and Higher Education lecturers from a range of educational institutions, with an aim to determine what might constitute best practices in this area in Higher Education. We hypothesised that confidence, mathematics anxiety, and differences in student educational background were key factors here. We then investigated the issues surrounding these and whether they inhibit the acquisition of knowledge and skills pertaining to the theoretical basis of artificial intelligence and machine learning. This article shares the insights from both students and lecturers with experience in the field of AI and machine learning education, with the aim to inform prospective pedagogies and studies within this domain and move toward a framework for best practice in teaching and learning of these topics.


Machine Learning (ML) furnishes the ability of insights on automatic recognizing patterns and determining the prediction models for the structured and unstructured data even in the absence of explicit programming instructions. Today, the impact of Artificial Intelligence (AI) has grown up to several heights, ranging from Life sciences to the Management techniques. The integration of ML led to reduce or eliminate the errors in the prediction, classification and simulation models. The objective of the paper is to represent the ML objectives, explore the various ML techniques and algorithms with its applications in the various fields.


Author(s):  
Matthew N. O. Sadiku ◽  
Chandra M. M Kotteti ◽  
Sarhan M. Musa

Machine learning is an emerging field of artificial intelligence which can be applied to the agriculture sector. It refers to the automated detection of meaningful patterns in a given data.  Modern agriculture seeks ways to conserve water, use nutrients and energy more efficiently, and adapt to climate change.  Machine learning in agriculture allows for more accurate disease diagnosis and crop disease prediction. This paper briefly introduces what machine learning can do in the agriculture sector.


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