scholarly journals Machine Learning Applications in Head and Neck Radiation Oncology: Lessons From Open-Source Radiomics Challenges

2018 ◽  
Vol 8 ◽  
Author(s):  
Hesham Elhalawani ◽  
Timothy A. Lin ◽  
Stefania Volpe ◽  
Abdallah S. R. Mohamed ◽  
Aubrey L. White ◽  
...  
2021 ◽  
Vol 11 ◽  
Author(s):  
Stefania Volpe ◽  
Matteo Pepa ◽  
Mattia Zaffaroni ◽  
Federica Bellerba ◽  
Riccardo Santamaria ◽  
...  

Background and PurposeMachine learning (ML) is emerging as a feasible approach to optimize patients’ care path in Radiation Oncology. Applications include autosegmentation, treatment planning optimization, and prediction of oncological and toxicity outcomes. The purpose of this clinically oriented systematic review is to illustrate the potential and limitations of the most commonly used ML models in solving everyday clinical issues in head and neck cancer (HNC) radiotherapy (RT).Materials and MethodsElectronic databases were screened up to May 2021. Studies dealing with ML and radiomics were considered eligible. The quality of the included studies was rated by an adapted version of the qualitative checklist originally developed by Luo et al. All statistical analyses were performed using R version 3.6.1.ResultsForty-eight studies (21 on autosegmentation, four on treatment planning, 12 on oncological outcome prediction, 10 on toxicity prediction, and one on determinants of postoperative RT) were included in the analysis. The most common imaging modality was computed tomography (CT) (40%) followed by magnetic resonance (MR) (10%). Quantitative image features were considered in nine studies (19%). No significant differences were identified in global and methodological scores when works were stratified per their task (i.e., autosegmentation).Discussion and ConclusionThe range of possible applications of ML in the field of HN Radiation Oncology is wide, albeit this area of research is relatively young. Overall, if not safe yet, ML is most probably a bet worth making.


2021 ◽  
Vol 19 ◽  
pp. 13-24
Author(s):  
Matthew Field ◽  
Nicholas Hardcastle ◽  
Michael Jameson ◽  
Noel Aherne ◽  
Lois Holloway

2018 ◽  
Vol 33 (1) ◽  
pp. 69-78 ◽  
Author(s):  
Whitney C. Wallace ◽  
Steven J. Feigenberg ◽  
Tiffani N. Tyer ◽  
Janet F. Pope ◽  
Dawn M. Erickson ◽  
...  

2013 ◽  
Vol 36 (1) ◽  
pp. 70-76 ◽  
Author(s):  
Frank Hoebers ◽  
Eugene Yu ◽  
Avi Eisbruch ◽  
Wade Thorstad ◽  
Brian O’Sullivan ◽  
...  

2020 ◽  
Author(s):  
Victorien Delannée ◽  
Marc Nicklaus

In the past two decades a lot of different formats for molecules and reactions have been created. These formats were mostly developed for the purposes of identifiers, representation, classification, analysis and data exchange. A lot of efforts have been made on molecule formats but only few for reactions where the endeavors have been made mostly by companies leading to proprietary formats. Here, we developed a new open-source format which allows to encode and decode a reaction into multi-layers machine readable code, which aggregates reactants and products into a condensed graph of reaction (CGR). This format is flexible and can be used in a context of reaction similarity searching and classification. It is also designed for database organization, machine learning applications and as a new transform reaction language.


2020 ◽  
Author(s):  
Victorien Delannée ◽  
Marc Nicklaus

In the past two decades a lot of different formats for molecules and reactions have been created. These formats were mostly developed for the purposes of identifiers, representation, classification, analysis and data exchange. A lot of efforts have been made on molecule formats but only few for reactions where the endeavors have been made mostly by companies leading to proprietary formats. Here, we developed a new open-source format which allows to encode and decode a reaction into multi-layers machine readable code, which aggregates reactants and products into a condensed graph of reaction (CGR). This format is flexible and can be used in a context of reaction similarity searching and classification. It is also designed for database organization, machine learning applications and as a new transform reaction language.


2020 ◽  
Vol 12 (1) ◽  
Author(s):  
Victorien Delannée ◽  
Marc C. Nicklaus

AbstractIn the past two decades a lot of different formats for molecules and reactions have been created. These formats were mostly developed for the purposes of identifiers, representation, classification, analysis and data exchange. A lot of efforts have been made on molecule formats but only few for reactions where the endeavors have been made mostly by companies leading to proprietary formats. Here, we present ReactionCode: a new open-source format that allows one to encode and decode a reaction into multi-layer machine readable code, which aggregates reactants and products into a condensed graph of reaction (CGR). This format is flexible and can be used in a context of reaction similarity searching and classification. It is also designed for database organization, machine learning applications and as a new transform reaction language.


2020 ◽  
Vol 30 (4) ◽  
pp. 517-529
Author(s):  
Farhad Maleki ◽  
William Trung Le ◽  
Thiparom Sananmuang ◽  
Samuel Kadoury ◽  
Reza Forghani

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