scholarly journals Transcriptome-Wide Identification and Characterization of MYB Transcription Factor Genes in the Laticifer Cells of Hevea brasiliensis

2017 ◽  
Vol 8 ◽  
Author(s):  
Ying Wang ◽  
Di-Feng Zhan ◽  
Hui-Liang Li ◽  
Dong Guo ◽  
Jia-Hong Zhu ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Hevea Brasiliensis ◽  
Myb Transcription Factor ◽  
Transcription Factor Genes ◽  
Identification And Characterization

Identification and Functional Characterization of R3 MYB Transcription Factor Genes in Soybean

2018 ◽  
Vol 61 (2) ◽  
pp. 85-96 ◽  
Author(s):  
Hongwei Xun ◽  
Zhibing Zhang ◽  
Yunxiao Zhou ◽  
Xueyan Qian ◽  
Yingshan Dong ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Functional Characterization ◽  
Myb Transcription Factor ◽  
Transcription Factor Genes

Molecular characterization of MYB transcription factor genes from Panax ginseng

2017 ◽  
Vol 64 (3) ◽  
pp. 398-409 ◽  
Author(s):  
J. Y. Choi ◽  
R. Abbai ◽  
Y. J. Kim ◽  
J. Silva ◽  
S. Rahimi ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Molecular Characterization ◽  
Panax Ginseng ◽  
Myb Transcription Factor ◽  
Transcription Factor Genes

scholarly journals Functional characterization of a new grapevine MYB transcription factor and regulation of proanthocyanidin biosynthesis in grapes

2014 ◽  
Vol 65 (15) ◽  
pp. 4433-4449 ◽  
Author(s):  
Kazuya Koyama ◽  
Mineyo Numata ◽  
Ikuko Nakajima ◽  
Nami Goto-Yamamoto ◽  
Hideo Matsumura ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Functional Characterization ◽  
Myb Transcription Factor

scholarly journals Identification and characterization of MAGO and Y14 genes in Hevea brasiliensis

2016 ◽  
Vol 39 (1) ◽  
pp. 73-85 ◽  
Author(s):  
Zi-Ping Yang ◽  
Hui-Liang Li ◽  
Dong Guo ◽  
Shi-Qing Peng
Keyword(s):  
Hevea Brasiliensis ◽  
Identification And Characterization

scholarly journals Identification and characterization of constrained non-exonic bases lacking predictive epigenomic and transcription factor binding annotations

2019 ◽  
Author(s):  
Olivera Grujic ◽  
Tanya N. Phung ◽  
Soo Bin Kwon ◽  
Adriana Arneson ◽  
Yuju Lee ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Transcription Factor Binding ◽  
Regulatory Sequence ◽  
Human Genetic Variation ◽  
Sequence Motifs ◽  
Variant Prioritization ◽  
Factor Binding ◽  
Genome Wide ◽  
Identification And Characterization

AbstractAnnotations of evolutionarily constraint provide important information for variant prioritization. Genome-wide maps of epigenomic marks and transcription factor binding provide complementary information for interpreting a subset of such prioritized variants. Here we developed the Constrained Non-Exonic Predictor (CNEP) to quantify the evidence of each base in the human genome being in a constrained non-exonic element from over 60,000 epigenomic and transcription factor binding features. We find that the CNEP score outperforms baseline and related existing scores at predicting constrained non-exonic bases from such data. However, a subset of such bases are still not well predicted by CNEP. We developed a complementary Conservation Signature Score by CNEP (CSS-CNEP) using conservation state and constrained element annotations that is predictive of those bases. Using human genetic variation, regulatory sequence motifs, mouse epigenomic data, and retrospectively considered additional human data we further characterize the nature of constrained non-exonic bases with low CNEP scores.

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