scholarly journals Hyperspectral Imaging to Assess the Presence of Powdery Mildew (Erysiphe necator) in cv. Carignan Noir Grapevine Bunches

Agronomy ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 88 ◽  
Author(s):  
Claudia Pérez-Roncal ◽  
Ainara López-Maestresalas ◽  
Carlos Lopez-Molina ◽  
Carmen Jarén ◽  
Jorge Urrestarazu ◽  
...  
Keyword(s):  
Powdery Mildew ◽  
Hyperspectral Imaging ◽  
External Validation ◽  
Spatial Location ◽  
Image Features ◽  
Range Image ◽  
Spatial Image ◽  
Standard Normal Variate ◽  
Mean Centering ◽  
Standard Normal

Powdery mildew is a worldwide major fungal disease for grapevine, which adversely affects both crop yield and produce quality. Disease identification is based on visible signs of a pathogen once the plant has already been infected; therefore, techniques that allow objective diagnosis of the disease are currently needed. In this study, the potential of hyperspectral imaging (HSI) technology to assess the presence of powdery mildew in grapevine bunches was evaluated. Thirty Carignan Noir grape bunches, 15 healthy and 15 infected, were analyzed using a lab-scale HSI system (900–1700 nm spectral range). Image processing was performed to extract spectral and spatial image features and then, classification models by means of Partial Least Squares Discriminant Analysis (PLS-DA) were carried out for healthy and infected pixels distinction within grape bunches. The best discrimination was achieved for the PLS-DA model with smoothing (SM), Standard Normal Variate (SNV) and mean centering (MC) pre-processing combination, reaching an accuracy of 85.33% in the cross-validation model and a satisfactory classification and spatial location of either healthy or infected pixels in the external validation. The obtained results suggested that HSI technology combined with chemometrics could be used for the detection of powdery mildew in black grapevine bunches.

scholarly journals Hyperspectral Imaging for the Nondestructive Quality Assessment of the Firmness of Nanguo Pears Under Different Freezing/Thawing Conditions

Sensors ◽  
2019 ◽  
Vol 19 (14) ◽  
pp. 3124 ◽  
Author(s):  
Zhang ◽  
Shang ◽  
Wang ◽  
Zhang ◽  
Yu ◽  
...  
Keyword(s):  
Root Mean Square Error ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Hyperspectral Imaging ◽  
Correlation Coefficients ◽  
Mean Square ◽  
Critical Temperatures ◽  
Standard Normal Variate ◽  
Scattering Correction ◽  
Standard Normal

Firmness changes in Nanguo pears under different freezing/thawing conditions have been characterized by hyperspectral imaging (HSI). Four different freezing/thawing conditions (the critical temperatures, numbers of cycles, holding time and cooling rates) were set in this experiment. Four different pretreatment methods were used: multivariate scattering correction (MSC), standard normal variate (SNV), Savitzky-Golay standard normal variate (S-G-SNV) and Savitzky-Golay multiplicative scattering correction (S-G-MSC). Combined with competitive adaptive reweighted sampling (CARS) to identify characteristic wavelengths, firmness prediction models of Nanguo pears under different freezing/thawing conditions were established by partial least squares (PLS) regression. The performance of the firmness model was analyzed quantitatively by the correlation coefficient (R), the root mean square error of calibration (RMSEC), the root mean square error of prediction (RMSEP) and the root mean square error of cross validation (RMSECV). The results showed that the MSC-PLS model has the highest accuracy at different cooling rates and holding times; the correlation coefficients of the calibration set (Rc) were 0.899 and 0.927, respectively, and the correlation coefficients of the validation set (Rp) were 0.911 and 0.948, respectively. The accuracy of the SNV-PLS model was the highest at different numbers of cycles, and the Rc and the Rp were 0.861 and 0.848, respectively. The RMSEC was 65.189, and the RMSEP was 65.404. The accuracy of the S-G-SNV-PLS model was the highest at different critical temperatures, with Rc and Rp values of 0.854 and 0.819, respectively, and RMSEC and RMSEP values of 74.567 and 79.158, respectively.

Applicability of Vis-NIR hyperspectral imaging for monitoring wood moisture content (MC)

Holzforschung ◽  
2013 ◽  
Vol 67 (3) ◽  
pp. 307-314 ◽  
Author(s):  
Hikaru Kobori ◽  
Nathalie Gorretta ◽  
Gilles Rabatel ◽  
Véronique Bellon-Maurel ◽  
Gilles Chaix ◽  
...  
Keyword(s):  
Moisture Content ◽  
Hyperspectral Imaging ◽  
Water Distribution ◽  
Near Infrared ◽  
Least Squares Regression ◽  
Wood Moisture ◽  
Standard Normal Variate ◽  
Average Reflectance ◽  
Standard Normal ◽  
High Prediction

Abstract Visible-near-infrared hyperspectral imaging was tested for its suitability for monitoring the moisture content (MC) of wood samples during natural drying. Partial least-squares regression (PLSR) prediction of MC was performed on the basis of average reflectance spectra obtained from hyperspectral images. The validation showed high prediction accuracy. The results were compared concerning the PLSR prediction of MC mapping from raw spectra and standard normal variate (SNV) treatment. SNV pretreatment leads to the best results for visualizing the MC distribution in wood. Hyperspectral imaging has a high potential for monitoring the water distribution of wood.

Classification of Floral Origins of Honey by NIR and Chemometrics

2012 ◽  
Vol 605-607 ◽  
pp. 905-909 ◽  
Author(s):  
Xiu Ying Liang ◽  
Xiao Yu Li ◽  
Wen Jun Wu
Keyword(s):  
Spectral Data ◽  
Spectral Region ◽  
Near Infrared ◽  
Back Propagation ◽  
Nir Spectroscopy ◽  
Classification Rate ◽  
Standard Normal Variate ◽  
Mean Centering ◽  
Scattering Correction ◽  
Standard Normal

Near-infrared (NIR) spectroscopy combined with chemometrics methods has been investigated to discriminate type of honey. 147 NIR spectra of six floral origins of honey samples were collected within 4000~10000cm-1 spectral region. Spectral data were compressed using partial least squares (PLS). Back propagation neural networks (BPNN) models were constructed to distinguish the type of honey. Six spectral data pretreatments including first derivative, first derivatives followed by mean centering(MC), second derivatives, Savitzky-Golay smoothing, standard normal variate transformation (SNV) and multiplicative scattering correction (MSC) were compared to establish the optimal models for honey discrimination. Savitzky-Golay smoothing proved more effective than the other data pretreatments. BPNN models were developed within the full spectral region, 5303～6591cm-1 and 7012～10001cm-1, respectively. Results have shown that the highest(100%) classification rate was achieved within 5303～6591cm-1 wave range. Our results indicated that NIR spectroscopy with chemometrics techniques can be applied to classify rapidly honeys of different floral origin.

scholarly journals Development of a Non-Destructive Method for Detection of the Juiciness of Pear via VIS/NIR Spectroscopy Combined with Chemometric Methods

Foods ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 1778
Author(s):  
Fan Wang ◽  
Chunjiang Zhao ◽  
Guijun Yang
Keyword(s):  
Near Infrared ◽  
External Validation ◽  
Scatter Correction ◽  
Nir Spectroscopy ◽  
Spectral Ratio ◽  
Optical Path Length ◽  
Standard Normal Variate ◽  
Length Estimation ◽  
Standard Normal ◽  
Non Destructive

Juiciness is a primary index of pear quality and freshness, which is also considered as important as sweetness for the consumers. Development of a non-destructive detection method for pear juiciness is meaningful for producers and sellers. In this study, visible−near-infrared (VIS/NIR) spectroscopy combined with different spectral preprocessing methods, including normalization (NOR), first derivative (FD), detrend (DET), standard normal variate (SNV), multiplicative scatter correction (MSC), probabilistic quotient normalization (PQN), modified optical path length estimation and correction (OPLECm), linear regression correction combined with spectral ratio (LRC-SR) and orthogonal spatial projection combined with spectral ratio (OPS-SR), was used for comparison in detection of pear juiciness. Partial least squares (PLS) regression was used to establish the calibration models between the preprocessing spectra (650–1100 nm) and juiciness measured by the texture analyzer. In addition, competitive adaptive reweighted sampling (CARS) was used to identify the characteristic wavelengths and simplify the PLS models. All obtained models were evaluated via Monte Carlo cross-validation (MCCV) and external validation. The PLS model established by 19 characteristic variables after LRC-SR preprocessing displayed the best prediction performance with external verification determination coefficient (R2v) of 0.93 and root mean square error (RMSEv) of 0.97%. The results demonstrate that VIS/NIR coupled with LRC-SR method can be a suitable strategy for the quick assessment of juiciness for pears.

scholarly journals Machine Learning-Based Prediction of Selected Parameters of Commercial Biomass Pellets Using Line Scan Near Infrared-Hyperspectral Image

Processes ◽  
2021 ◽  
Vol 9 (2) ◽  
pp. 316
Author(s):  
Lakkana Pitak ◽  
Kittipong Laloon ◽  
Seree Wongpichet ◽  
Panmanas Sirisomboon ◽  
Jetsada Posom
Keyword(s):  
Near Infrared ◽  
Hyperspectral Image ◽  
Thermal Conversion ◽  
High Energy ◽  
Volatile Matter ◽  
Successive Projections Algorithm ◽  
Color Distribution ◽  
Standard Normal Variate ◽  
Distribution Mapping ◽  
Standard Normal

Biomass pellets are required as a source of energy because of their abundant and high energy. The rapid measurement of pellets is used to control the biomass quality during the production process. The objective of this work was to use near infrared (NIR) hyperspectral images for predicting the properties, i.e., fuel ratio (FR), volatile matter (VM), fixed carbon (FC), and ash content (A), of commercial biomass pellets. Models were developed using either full spectra or different spatial wavelengths, i.e., interval successive projections algorithm (iSPA) and interval genetic algorithm (iGA), wavelengths and different spectral preprocessing techniques. Their performances were then compared. The optimal model for predicting FR could be created with second derivative (D2) spectra with iSPA-100 wavelengths, while VM, FC, and A could be predicted using standard normal variate (SNV) spectra with iSPA-100 wavelengths. The models for predicting FR, VM, FC, and A provided R2 values of 0.75, 0.81, 0.82, and 0.87, respectively. Finally, the prediction of the biomass pellets’ properties under color distribution mapping was able to track pellet quality to control and monitor quality during the operation of the thermal conversion process and can be intuitively used for applications with screening.

Remediation-related monitoring of heavy metal concentration of contaminated Technosol using hyperspectral measurements

2021 ◽  
Author(s):  
Friederike Kaestner ◽  
Magdalena Sut-Lohmann ◽  
Thomas Raab ◽  
Hannes Feilhauer ◽  
Sabine Chabrillat
Keyword(s):  
Heavy Metal ◽  
Random Forest ◽  
Metal Concentration ◽  
Strong Dependence ◽  
Scatter Correction ◽  
Heavy Metal Concentration ◽  
Standard Normal Variate ◽  
Multiplicative Scatter Correction ◽  
Second Derivatives ◽  
Standard Normal

<p>Across Europe there are 2.5 million potentially contaminated sites, approximately one third have already been identified and around 15% have been sanitized. Phytoremediation is a well-established technique to tackle this problem and to rehabilitate soil. However, remediation methods, such as biological treatments with microorganisms or phytoremediation with trees, are still relatively time consuming. A fast monitoring of changes in heavy metal content over time in contaminated soils with hyperspectral spectroscopy is one of the first key factors to improve and control existing bioremediation methods.</p><p>At former sewage farms near Ragow (Brandenburg, Germany), 110 soil samples with different contamination levels were taken at a depth between 15-20 cm. These samples were prepared for hyperspectral measurements using the HySpex system under laboratory conditions, combing a VNIR (400-1000 nm) and a SWIR (1000-2500 nm) line-scan detector. Different spectral pre-processing methods, including continuum removal, first and second derivatives, standard normal variate, normalisation and multiplicative scatter correction, with two established estimation models such as Partial Least Squares Regression (PLSR) and Random Forest Regression (RFR), were applied to predict the heavy metal concentration (Ba, Ni, Cr, Cu) of this specific Technosol. The coefficient of determination (R2) shows for Ba and Ni values between 0.50 (RMSE: 9%) and 0.61 (RMSE: 6%) for the PLSR and between 0.84 (RMSE: 0.03%) and 0.91 (RMSE: 0.02%) for the RFR model. The results for Cu and Cr show values between 0.57 (RMSE: 17.9%) and 0.69 (RMSE: 15%) for the PLSR and 0.86 (0.12%) and 0.93 (0.01%) for the RFR model. The pre-processing method, which improve the robustness and performance of both models best, is multiplicative scatter correction followed by the standard normal variate for the first and second derivatives. Random Forest in a first approach seems to deliver better modeling performances. Still, the pronounced differences between PLSR and RFR fits indicate a strong dependence of the results on the respective modelling technique. This effect is subject to further investigation and will be addressed in the upcoming analysis steps.</p>

scholarly journals PREDIKSI TOTAL PADATAN TERLARUT BUAH MELON GOLDEN (Cucumis melo L.) MENGGUNAKAN VIS-SWNIRS DAN ANALISIS MULTIVARIAT

2020 ◽  
Vol 25 (2) ◽  
Author(s):  
Yuda Hadiwijaya ◽  
Kusumiyati Kusumiyati ◽  
Agus Arip Munawar
Keyword(s):  
Cucumis Melo ◽  
Partial Least Squares Regression ◽  
Scatter Correction ◽  
Least Squares Regression ◽  
Orthogonal Signal ◽  
Standard Normal Variate ◽  
Orthogonal Signal Correction ◽  
Signal Correction ◽  
Standard Normal ◽  
Cucumis Melo L

Penelitian ini bertujuan memprediksi total padatan terlarut buah melon golden menggunakan Vis-SWNIRS dan analisis multivariat. 82 sampel buah melon golden dipanen untuk dianalisis di Laboratorium Hortikultura, Fakultas Pertanian, Universitas Padjadjaran. Nirvana AG410 spectrometer dengan rentang panjang gelombang 300 sampai 1050 nm digunakan untuk pengambilan data spektra pada sampel buah melon utuh. Metode koreksi spektra yang digunakan yaitu standard normal variate (SNV), multiplicative scatter correction (MSC), dan orthogonal signal correction (OSC). Pemodelan kalibrasi dilakukan menggunakan partial least squares regression (PLSR). Hasil penelitian menunjukkan bahwa penggunaan metode koreksi spektra OSC menampikan model kalibrasi terbaik dibandingkan spektra original dan 2 spektra lainnya yang telah dikoreksi. Koefisien determinasi pada spektra OSC memperlihatkan nilai R2 tertinggi yaitu 0.99, disamping itu nilai ratio performance to deviation (RPD) yang diperoleh sebesar 3.40. Hal ini membuktikan bahwa total padatan terlarut buah melon golden dapat diprediksi dengan akurasi yang tinggi menggunakan Vis-SWNIRS dan analisis multivariat.

On the Scales Associated with Near-Infrared Reflectance Difference Spectra

1995 ◽  
Vol 49 (6) ◽  
pp. 765-772 ◽  
Author(s):  
M. S. Dhanoa ◽  
S. J. Lister ◽  
R. J. Barnes
Keyword(s):  
Near Infrared ◽  
Scatter Correction ◽  
The Other ◽  
Difference Spectra ◽  
Near Infrared Reflectance ◽  
Standard Normal Variate ◽  
Near Infrared Spectra ◽  
Standard Normal ◽  
Relationship Of ◽  
The Relationship

Scale differences of individual near-infrared spectra are identified when set-independent standard normal variate (SNV) and de-trend (DT) transformations are applied in either SNV followed by DT or DT then SNV order. The relationship of set-dependent multiplicative scatter correction (MSC) to SNV is also referred to. A simple correction factor is proposed to convert derived spectra from one order to the other. It is suggested that the suitable order for the study of changes using difference spectra (when removing baselines) should be DT followed by SNV, which leads to all derived spectra on the scale of mean zero and variance equal to one. If baselines are identical, then SNV scale spectra can be used to calculate differences.

scholarly journals Low-Content Quantitation in Entecavir Tablets Using 1064 nm Raman Spectroscopy

2020 ◽  
Vol 2020 ◽  
pp. 1-11
Author(s):  
Yanlei Kang ◽  
Yushan Zhou ◽  
Qiaoyu Wu ◽  
Ning Wang ◽  
Jianguang Zhou
Keyword(s):  
Raman Spectroscopy ◽  
Limit Of Detection ◽  
Pharmaceutical Formulations ◽  
Active Pharmaceutical Ingredient ◽  
Difficult Problem ◽  
Excitation Wavelength ◽  
Standard Normal Variate ◽  
First Choice ◽  
Standard Normal ◽  
Calibration Samples

The nondestructive and high sensitive analysis of a low content of an active pharmaceutical ingredient (API) was a difficult problem, especially in a complex system of pharmaceutical formulations. In this paper, a rapid and no sample preparation method was developed, which used a 1064 nm Raman spectrometer to detect entecavir monohydrate (ETV-H) in Baraclude tablets. Entecavir was a drug approved by FDA for the treatment of chronic hepatitis B and became the first choice in the market. The wavelength selection results displayed that the signal-to-background ratio of the Raman spectrum with 1064 nm excitation wavelength was 14 times that of the commonly used 785 nm wavelength. The partial least squares (PLS) method was used to calibrate concentration models containing 0.1% to 1.0% w/w% ETV-H in calibration set samples. Different preprocessing methods were used to eliminate the background interference and extract more spectral information. Calibration samples were used to choose the best performing model. Then, all the calibration samples combined with the best performing models’ parameters successfully predicted the content of ETV-H in Baraclude tablets. Combining baseline processing and standard normal variate (SNV) with PLS, the model showed a good result with an R2 of 0.973, RMSEC of 0.05%, and RMSEP of 0.03% on the spectral region of 1350–1700 cm−1. The limit of detection of this model was 0.17%. These results showed that 1064 nm Raman spectroscopy technology could be an alternative analytical procedure to quantify low-content API in intact tablets.

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