scholarly journals The Development of New Species-Specific Molecular Markers Based on 5S rDNA in Elaeagnus L. Species

Plants ◽  
2021 ◽  
Vol 10 (12) ◽  
pp. 2713
Author(s):  
Oleg S. Alexandrov ◽  
Gennady I. Karlov
Keyword(s):  
Molecular Markers ◽  
New Species ◽  
Western Europe ◽  
Economic Value ◽  
Ornamental Plants ◽  
Far East ◽  
Genetic Research ◽  
5S Rdna ◽  
Identification Of Species ◽  
Species Specific

The Elaeagnus L. species are trees and bushes that mainly grow in temperate zones of Western Europe; Minor, Central, and Southeast Asia; the Far East; and North America. Some species are used as fruit or ornamental plants and have economic value. Problems with the identification of species in the Elaeagnus genus by molecular genetical methods arise in the study of populations, systematics, breeding, and other areas of plant science and practice. Recently, the polymorphism of 5S ribosomal DNA non-transcribed spacers (5S rDNA NTSs) in Elaeagnaceae Adans. has been described. The results were used in our study as a basis for development of new species-specific molecular markers for some members of the Elaeagnus genus. The author’s method was applied for finding regions that were potentially applicable for species-specific primer design. As a result, some species-specific molecular markers were developed for Elaeagnus angustifolia L., E. commutata Bernh., E. pungens Thunb., and E. multiflora Thunb. These markers were tested in a range of samples and showed the presence of amplified fragments in lanes of the marked species only. Samples of other species showed no amplifications. Thus, the developed markers may be useful for the species identification of the studied Elaeagnus plants in botanical, dendrological, and genetic research (especially in a leafless period of year), as well as in breeding and hybridization experiments.

scholarly journals A Comparative Study of 5S rDNA Non-Transcribed Spacers in Elaeagnaceae Species

Plants ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 4
Author(s):  
Oleg S. Alexandrov ◽  
Olga V. Razumova ◽  
Gennady I. Karlov
Keyword(s):  
Polymerase Chain Reaction ◽  
Molecular Markers ◽  
Dna Markers ◽  
5S Rdna ◽  
Chain Reaction ◽  
Closely Related Species ◽  
Pcr Products ◽  
Polymerase Chain ◽  
Species Specific ◽  
Shepherdia Canadensis

5S rDNA is organized as a cluster of tandemly repeated monomers that consist of the conservative 120 bp coding part and non-transcribed spacers (NTSs) with different lengths and sequences among different species. The polymorphism in the 5S rDNA NTSs of closely related species is interesting for phylogenetic and evolutional investigations, as well as for the development of molecular markers. In this study, the 5S rDNA NTSs were amplified with universal 5S1/5S2 primers in some species of the Elaeagnaceae Adans. family. The polymerase chain reaction (PCR) products of five Elaeagnus species had similar lengths near 310 bp and were different from Shepherdia canadensis (L.) Nutt. and Sh. argentea (Pusch.) Nutt. samples (260 bp and 215 bp, respectively). The PCR products were cloned and sequenced. An analysis of the sequences revealed that intraspecific levels of NTS identity are high (approximately 95–96%) and similar in the Elaeagnus L. species. In Sh. argentea, this level was slightly lower due to the differences in the poly-T region. Moreover, the intergeneric and intervarietal NTS identity levels were studied and compared. Significant differences between species (except E. multiflora Thunb. and E. umbellata Thunb.) and genera were found. Herein, a range of the NTS features is discussed. This study is another step in the investigation of the molecular evolution of Elaeagnaceae and may be useful for the development of species-specific DNA markers in this family.

scholarly journals The Development of Populus alba L. and Populus tremula L. Species Specific Molecular Markers Based on 5S rDNA Non-Transcribed Spacer Polymorphism

Forests ◽  
2019 ◽  
Vol 10 (12) ◽  
pp. 1092 ◽  
Author(s):  
Alexandrov ◽  
Karlov
Keyword(s):  
Molecular Markers ◽  
Tree Species ◽  
5S Rdna ◽  
Populus Tremula ◽  
Plant Science ◽  
Populus Alba ◽  
Natural Hybrid ◽  
Species Specific ◽  
Genetics Of Populations

The Populus L. genus includes tree species that are botanically grouped into several sections. This species successfully hybridizes both in the same section and among other sections. Poplar hybridization widely occurs in nature and in variety breeding. Therefore, the development of poplar species’ specific molecular markers is very important. The effective markers for trees of the Aigeiros Duby section have recently been developed using the polymorphism of 5S rDNA non-transcribed spacers (NTSs). In this article, 5S rDNA NTS-based markers were designed for several species of the Leuce Duby section. The alb9 marker amplifies one fragment with the DNA matrix of P. alba and P. × canescens (natural hybrid P. alba × P. tremula). The alb2 marker works the same way, except for the case with Populus bolleana. In this case, the amplification of three fragments was observed. The tremu1 marker amplification was detected with the DNA matrix of P. tremula and P. × canescens. Thus, the developed markers may be applied as a useful tool for P. alba, P. tremula, P. × canescens, and P. bolleana identification in various areas of plant science such as botany, dendrology, genetics of populations, variety breeding, etc.

scholarly journals Development of 5S rDNA-Based Molecular Markers for the Identification of Populus deltoides Bartr. ex Marshall, Populus nigra L., and Their Hybrids

Forests ◽  
2018 ◽  
Vol 9 (10) ◽  
pp. 604 ◽  
Author(s):  
Oleg Alexandrov ◽  
Gennady Karlov
Keyword(s):  
Molecular Markers ◽  
Species Identification ◽  
Populus Deltoides ◽  
5S Rdna ◽  
High Ability ◽  
Hybrid Analysis ◽  
Marker System ◽  
Interspecies Hybridization ◽  
Poplar Breeding ◽  
Species Specific

Populus L. is a tree genus that includes species with a high ability for interspecies hybridization. This process takes place in nature, and is used in poplar breeding. As а result, species identification in poplar populations and plantations is very difficult. In this study, a molecular marker system was developed for the identification of the most significant poplar species (P. nigra L. and P. deltoids Bartr. ex Marshall). The basis of the system is a polymorphism in non-transcribed spacers (NTSs) of 5S rDNA. The species-specific molecular markers were tested on a number of species and hybrids of poplars. It was shown that the marker system is a powerful tool for species identification, hybrid analysis, parent identification, and poplar breeding.

scholarly journals Development of Populus alba L. and Populus tremula L. Species Specific Molecular Markers Based on the 5S rDNA Non-transcribed Spacer Polymorphism

2019 ◽  
Author(s):  
Oleg S. Alexandrov ◽  
Gennady I. Karlov
Keyword(s):  
Molecular Markers ◽  
Tree Species ◽  
5S Rdna ◽  
Populus Tremula ◽  
Plant Science ◽  
Populus Alba ◽  
Natural Hybrid ◽  
Species Specific ◽  
Genetics Of Populations

The Populus L. genus unites tree species, which are botanically grouped into several sections. The species successfully hybridize both in the same section and between some sections. The poplar hybridization widely occurs in nature and in variety breeding. Therefore, the development of poplar species specific molecular markers is very actual. The effective markers for trees of the Aigeiros Daby section have been recently developed using the polymorphism of the 5S rDNA non-transcribed spacers (NTSs). In this article, the 5S rDNA NTS based markers were designed for several species of the Leuce Daby section. The alb9 marker amplifies one fragment with DNA matrix of P. alba and P. × canescens (natural hybrid P. alba × P. tremula). The alb2 marker works the same way except the case with P. bolleana. In this case, the amplification of three fragments was observed. The tremu1 marker amplification is detected with DNA matrix of P. tremula and P. × canescens. Thus, the developed markers may be applied as useful tool for the P. alba, P. tremula, P. × canescens and P. bolleana identification in such areas of plant science as botany, dendrology, genetics of populations, variety breeding etc.

scholarly journals Balancing resources, demand, new challenges, and risks: what is next for the coal industry of Kuzbass

2021 ◽  
Vol 315 ◽  
pp. 04016
Author(s):  
Yuri Fridman ◽  
Galina Rechko ◽  
Ekaterina Loginova ◽  
Alexander Pimonov
Keyword(s):  
Western Europe ◽  
Economic Value ◽  
Far East ◽  
Energy Transition ◽  
Coal Industry ◽  
Asia Pacific ◽  
Low Carbon ◽  
Kemerovo Oblast ◽  
Low Carbon Economy ◽  
Coal Market

The article gives an overview of the main external and internal challenges currently facing the coal industry and thus defining where the economy of Kemerovo Oblast – Kuzbass (a key coal-mining center in Russia) is heading. We claim the fourth energy transition as the most important among such challenges, whose basic paradigm is global economic and, in particular, energy systems decarbonization. Countries striving for a low-carbon economy chose coal as their primary target; for instance, Western Europe expects to exit coal-fired power generation by 2030–2035. Experts do not rule out that the world coal market will depend on China and India, the two emerging economies, in the foreseeable future. In this regard, the competitiveness of its coal products compared to solid fuel producers from Eastern Siberia and the Far East is becoming very important for Kuzbass: rivals are ready to supply higher-quality and logistically less expensive coal to the Asia-Pacific markets. In view of the fact that the idea of creating a coal-chemical cluster in Kemerovo Oblast as a long-term driver for the region’s economy has turned out to be untenable, it is now up against the task of forming a new economic doctrine of relations between the coal industry and Kuzbass. We believe it should rest upon the following idea: resources (including coal) have an enormous social and economic value. However, it is only possible to exercise this idea on the principles of harmonized development.

scholarly journals A new species of Ampulicomorpha Ashmead from Eocene French amber, with a list of fossil and extant Embolemidae (Insecta: Hymenoptera) of the world

2020 ◽  
Vol 191 ◽  
pp. 20
Author(s):  
Cédric Chény ◽  
Elvis Guillam ◽  
André Nel ◽  
Vincent Perrichot
Keyword(s):  
New Species ◽  
Evolutionary History ◽  
Western Europe ◽  
Distribution Map ◽  
Single Female ◽  
Fossil Species ◽  
The World ◽  
Poor Group ◽  
A New Species ◽  
Eocene Amber

Embolemidae is a cosmopolitan but species-poor group of chrysidoid wasps with a scarce fossil record, despite a long evolutionary history since at least the Early Cretaceous. Here, the new species, Ampulicomorpha quesnoyensis sp. nov., is illustrated and described based on a single female found in Early Eocene amber of Oise (France). The new species is compared with the three other known fossil species of the genus, and a key to all fossil species of Ampulicomorpha is provided. This is the third European fossil species of Ampulicomorpha, which suggests that the genus was once well established in Western Europe while it is more widely distributed in the Eastern Palaearctic region today. A list of all fossil and extant Embolemidae of the world, as well as a map of their geographical distribution map, are provided.

scholarly journals Multiple species‐specific molecular markers using nanofluidic array as a tool to detect prey DNA from carnivore scats

2021 ◽  
Author(s):  
Cecilia Di Bernardi ◽  
Camilla Wikenros ◽  
Eva Hedmark ◽  
Luigi Boitani ◽  
Paolo Ciucci ◽  
...  
Keyword(s):  
Molecular Markers ◽  
Multiple Species ◽  
Species Specific
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