Faculty Opinions recommendation of Recombinant antibodies against subcellular fractions used to track endogenous Golgi protein dynamics in vivo.

2003 ◽  
Author(s):  
Sachdev Sidhu
Keyword(s):  
Protein Dynamics ◽  
Recombinant Antibodies ◽  
Subcellular Fractions ◽  
Golgi Protein

scholarly journals Recombinant Antibodies Against Subcellular Fractions Used to Track Endogenous Golgi Protein Dynamics in Vivo

Traffic ◽  
2003 ◽  
Vol 4 (11) ◽  
pp. 739-753 ◽  
Author(s):  
Clément Nizak ◽  
Silvia Martin-Lluesma ◽  
Sandrine Moutel ◽  
Aurélien Roux ◽  
Thomas E. Kreis ◽  
...  
Keyword(s):  
Protein Dynamics ◽  
Recombinant Antibodies ◽  
Subcellular Fractions ◽  
Golgi Protein

In vitro and in vivo incorporation of 63Ni[II] into lung and liver subcellular fractions of Balb/C mice

1983 ◽  
Vol 4 (4) ◽  
pp. 387-392 ◽  
Author(s):  
Marie-Claire Heriant-Peers ◽  
Hartmut F. Hildebrand ◽  
Jean-Pierre Kerckaert
Keyword(s):  
Subcellular Fractions

scholarly journals Overexpression of CALNUC (Nucleobindin) Increases Agonist and Thapsigargin Releasable Ca2+ Storage in the Golgi

1999 ◽  
Vol 145 (2) ◽  
pp. 279-289 ◽  
Author(s):  
Ping Lin ◽  
Yong Yao ◽  
Robert Hofmeister ◽  
Roger Y. Tsien ◽  
Marilyn Gist Farquhar
Keyword(s):  
Endoplasmic Reticulum ◽  
Cho Cells ◽  
Binding Capacity ◽  
Binding Protein ◽  
Ip3 Receptor ◽  
Transfected Cells ◽  
Permeabilized Cells ◽  
Endoplasmic Reticulum Calcium ◽  
Golgi Protein

We previously demonstrated that CALNUC, a Ca2+-binding protein with two EF-hands, is the major Ca2+-binding protein in the Golgi by 45Ca2+ overlay (Lin, P., H. Le-Niculescu, R. Hofmeister, J.M. McCaffery, M. Jin, H. Henneman, T. McQuistan, L. De Vries, and M. Farquhar. 1998. J. Cell Biol. 141:1515–1527). In this study we investigated CALNUC's properties and the Golgi Ca2+ storage pool in vivo. CALNUC was found to be a highly abundant Golgi protein (3.8 μg CALNUC/mg Golgi protein, 2.5 × 105 CALNUC molecules/NRK cell) and to have a single high affinity, low capacity Ca2+-binding site (Kd = 6.6 μM, binding capacity = 1.1 μmol Ca2+/μmol CALNUC). 45Ca2+ storage was increased by 2.5- and 3-fold, respectively, in HeLa cells transiently overexpressing CALNUC-GFP and in EcR-CHO cells stably overexpressing CALNUC. Deletion of the first EF-hand α helix from CALNUC completely abolished its Ca2+-binding capability. CALNUC was correctly targeted to the Golgi in transfected cells as it colocalized and cosedimented with the Golgi marker, α-mannosidase II (Man II). Approximately 70% of the 45Ca2+ taken up by HeLa and CHO cells overexpressing CALNUC was released by treatment with thapsigargin, a sarcoplasmic/endoplasmic reticulum calcium ATPase (SERCA) (Ca2+ pump) blocker. Stimulation of transfected cells with the agonist ATP or IP3 alone (permeabilized cells) also resulted in a significant increase in Ca2+ release from Golgi stores. By immunofluorescence, the IP3 receptor type 1 (IP3R-1) was distributed over the endoplasmic reticulum and codistributed with CALNUC in the Golgi. These results provide direct evidence that CALNUC binds Ca2+ in vivo and together with SERCA and IP3R is involved in establishment of the agonist-mobilizable Golgi Ca2+ store.

scholarly journals Conformational dynamics is key to understanding loss-of-function of NQO1 cancer-associated polymorphisms and its correction by pharmacological ligands

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Encarnación Medina-Carmona ◽  
Rogelio J. Palomino-Morales ◽  
Julian E. Fuchs ◽  
Esperanza Padín-Gonzalez ◽  
Noel Mesa-Torres ◽  
...  
Keyword(s):  
Protein Dynamics ◽  
Protein Function ◽  
Conformational Dynamics ◽  
Loss Of Function ◽  
Quinone Oxidoreductase ◽  
Protein Levels ◽  
Terminal Domain ◽  
Directional Preference

Abstract Protein dynamics is essential to understand protein function and stability, even though is rarely investigated as the origin of loss-of-function due to genetic variations. Here, we use biochemical, biophysical, cell and computational biology tools to study two loss-of-function and cancer-associated polymorphisms (p.R139W and p.P187S) in human NAD(P)H quinone oxidoreductase 1 (NQO1), a FAD-dependent enzyme which activates cancer pro-drugs and stabilizes several oncosuppressors. We show that p.P187S strongly destabilizes the NQO1 dimer in vitro and increases the flexibility of the C-terminal domain, while a combination of FAD and the inhibitor dicoumarol overcome these alterations. Additionally, changes in global stability due to polymorphisms and ligand binding are linked to the dynamics of the dimer interface, whereas the low activity and affinity for FAD in p.P187S is caused by increased fluctuations at the FAD binding site. Importantly, NQO1 steady-state protein levels in cell cultures correlate primarily with the dynamics of the C-terminal domain, supporting a directional preference in NQO1 proteasomal degradation and the use of ligands binding to this domain to stabilize p.P187S in vivo. In conclusion, protein dynamics are fundamental to understanding loss-of-function in p.P187S and to develop new pharmacological therapies to rescue this function.

Evaluation of rat brain subcellular fractions for the prediction of in vivo drug metabolism in brain

2018 ◽  
Vol 33 (1) ◽  
pp. S79 ◽  
Author(s):  
Mohammad Shadid ◽  
Ying Liu ◽  
Elvana Veizaj ◽  
Jiansheng Huang ◽  
Josh Johnson ◽  
...  
Keyword(s):  
Drug Metabolism ◽  
Rat Brain ◽  
Subcellular Fractions ◽  
In Vivo Drug Metabolism

scholarly journals Phenethylamines in brain and liver of rats with experimentally induced phenylketonuria-like characteristics

1973 ◽  
Vol 132 (1) ◽  
pp. 95-100 ◽  
Author(s):  
David J. Edwards ◽  
Karl Blau
Keyword(s):  
Monoamine Oxidase ◽  
Rat Brain ◽  
Phenylalanine Hydroxylase ◽  
Brain Regions ◽  
Subcellular Fractions ◽  
Brain Cells ◽  
Blood Phenylalanine ◽  
Low Concentrations ◽  
Experimentally Induced

1. Phenethylamines were extracted from brain and liver of rats with phenylketonuria-like characteristics produced in vivo by inhibition of phenylalanine hydroxylase (EC 1.14.3.1) with p-chlorophenylalanine, with or without phenylalanine administration. To protect amines against oxidation by monoamine oxidase, pargyline was also administered. 2. β-Phenethylamine was the major compound found in brain and liver. β-Phenethanolamine and octopamine were also present, in lesser amounts, and the concentrations of these three amines paralleled blood phenylalanine concentrations. By comparison, tissues from control animals had only very low concentrations of these amines. 3. Small amounts of normetadrenaline, m-tyramine and 3-methoxytyramine were also found. 4. The inhibitors used, p-chlorophenylalanine and pargyline, gave rise to p-chlorophenethylamine and benzylamine respectively, the first via decarboxylation, the second probably by breakdown during extraction. 5. Distribution of phenethylamines in different brain regions and in subcellular fractions of rat brain cells was also investigated. The content of phenethylamine was highest in the striatum. 6. These findings are discussed in the light of changes occurring in human patients with uncontrolled phenylketonuria.

Proteinsynthese in grünen Blättern

1964 ◽  
Vol 19 (3) ◽  
pp. 235-248 ◽  
Author(s):  
Benno Parthier
Keyword(s):  
Amino Acids ◽  
Specific Activity ◽  
Subcellular Fractions ◽  
Mechanical Destruction ◽  
Cell Organization ◽  
Specific Activities ◽  
Short Time ◽  
Natural Cell

In the green leaves of Nicotiana rustica, protein synthesis of various subcellular fractions has been investigated in vivo after 14CO2-photosynthesis and also in vitro by incorporation of radioactive amino acids. Following photosynthesis, homogenization of the tissues, and differential centrifugation of the homogenates, the results show that all structural particles of the cell are able to use photosynthetically formed amino acids for the incorporation into their proteins. The proteins with the highest specific activities are found in the mitochondria-rich fractions, and with the lowest in the soluble cytoplasma supernatant. High specific activities are also observed in the ribosomal-rich fraction in short-time experiments, and also in the chloroplasts after exposure of the leaves to light. After an osmotic-mechanical destruction of the isolated 14C-labelled chloroplasts, the specific activities of lamellar proteins exceed the colourless soluble proteins of the chloroplasts. A green fraction, sedimented at 1,000 g, and perhaps mainly consisting of broken and leached chloroplasts, shows the highest specific activity of all chloroplast fractions. Obviously, due to the destruction of the natural cell organization, in vitro experiments give not only drastically decreased specific activities but also another distribution of the incorporated amino acids between the subcellular fractions, compared with experiments in vivo.

scholarly journals Method for generation of in vivo biotinylated recombinant antibodies by yeast mating

2006 ◽  
Vol 317 (1-2) ◽  
pp. 132-143 ◽  
Author(s):  
Nathalie Scholler ◽  
Barbara Garvik ◽  
Travis Quarles ◽  
Shaoyi Jiang ◽  
Nicole Urban
Keyword(s):  
Recombinant Antibodies ◽  
Yeast Mating
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