QTL Mapping for Seedling Dry Weight and Fresh Weight under Salt Stress and Candidate Genes Analysis in Brassica napus L.

2017 ◽  
Vol 43 (2) ◽  
pp. 179
Author(s):  
Lin-Tao HOU ◽  
Teng-Yue WANG ◽  
Hong-Ju JIAN ◽  
Jia WANG ◽  
Jia-Na LI ◽  
...  
Keyword(s):  
Salt Stress ◽  
Brassica Napus ◽  
Qtl Mapping ◽  
Candidate Genes ◽  
Dry Weight ◽  
Fresh Weight ◽  
Brassica Napus L

scholarly journals High-throughput phenotyping-based QTL mapping reveals the genetic architecture of the salt stress tolerance of Brassica napus

2021 ◽  
Author(s):  
Guofang Zhang ◽  
Jinzhi Zhou ◽  
Yan Peng ◽  
Zengdong Tan ◽  
Yuting Zhang ◽  
...  
Keyword(s):  
Salt Stress ◽  
Brassica Napus ◽  
Qtl Mapping ◽  
Stress Tolerance ◽  
Candidate Genes ◽  
Natural Population ◽  
High Throughput ◽  
Stress Conditions ◽  
Salt Stress Tolerance ◽  
High Throughput Phenotyping

Salt stress is a major limiting factor that severely affects the survival and growth of crops. It is important to understand the salt tolerance ability of Brassica napus and explore the underlying related genetic resources. We used a high-throughput phenotyping platform to quantify 2,111 image-based traits (i-traits) of a natural population under 3 different salt stress conditions and an intervarietal substitution line (ISL) population under 9 different stress conditions to monitor and evaluate the salt stress tolerance of B. napus over time. We finally identified 928 high-quality i-traits associated with the salt stress tolerance of B. napus. Moreover, we mapped the salt stress-related loci in the natural population via a genome-wide association study (GWAS) and performed a linkage analysis associated with the ISL population, respectively. The results revealed 234 candidate genes associated with salt stress response, and two novel candidate genes, BnCKX5 and BnERF3, were experimentally verified to regulate the salt stress tolerance of B. napus. This study demonstrates the feasibility of using high-throughput phenotyping-based QTL mapping to accurately and comprehensively quantify i-traits associated with B. napus. The mapped loci could be used for genomics-assisted breeding to genetically improve the salt stress tolerance of B. napus.

scholarly journals A Study of Proline Metabolism in Canola (Brassica napus L.) Seedlings under Salt Stress

Molecules ◽  
2012 ◽  
Vol 17 (5) ◽  
pp. 5803-5815 ◽  
Author(s):  
Mubshara Saadia ◽  
Amer Jamil ◽  
Nudrat Aisha Akram ◽  
Muhammad Ashraf
Keyword(s):  
Salt Stress ◽  
Brassica Napus ◽  
Proline Metabolism ◽  
Brassica Napus L

Prioritisation of candidate genes in QTL regions for seed germination and early seedling growth in bread wheat (Triticum aestivum) under salt-stress conditions

2021 ◽  
Vol 72 (1) ◽  
pp. 1
Author(s):  
Elham Rezaei ◽  
Eslam Majidi Hervan ◽  
Amin Azadi ◽  
Alireza Etminan ◽  
Hossein Ramshini
Keyword(s):  
Triticum Aestivum ◽  
Salt Stress ◽  
Candidate Genes ◽  
Metabolic Process ◽  
Stress Conditions ◽  
Phenotypic Variance ◽  
Fresh Weight ◽  
Main Effect ◽  
Early Seedling ◽  
Go Terms

Salinity and drought are major abiotic stresses affecting wheat (Triticum aestivum L.) production throughout the world, and discovery of loci for traits affecting yield under salinity may lead to the breeding for salt-tolerant plants. In the present study, 186 F10 recombinant inbred line (RIL) populations were evaluated under salt-stress conditions in order to identify main-effect and epistatic-effect quantitative trait loci (QTLs) for 15 traits in wheat during the germination and early-seedling stages. In total, 61 main-effect QTLs on 15 chromosomes and 21 epistatic interactions on 12 chromosomes were detected through composite interval mapping (CIM) and a mixed-model-based CIM method. Two major QTLs for primary-leaf fresh weight and coleoptile fresh weight were detected on chromosome (or linkage group) 5B2 and 2D, respectively, which contributed ~44% and 43% of the phenotypic variance. Additionally, 12 QTL clusters including different traits were detected on 1A1, 3A, 4A, 2B1, 3B, 5B1 and 2D1. Candidate genes were identified within QTL regions and gene ontology (GO) enrichment analysis was performed. In total, 9134 candidate genes were grouped into 274 GO terms (including 79 GO terms involved in the ‘biological process’ category). These genes directly or indirectly play a vital role such as lipid localisation, biological regulation, fatty acid biosynthetic process, cellular process, DNA conformation change, translational elongation, carbohydrate metabolic process, Fe ion homeostasis, hydrogen peroxide metabolic process, and pigment biosynthetic process at the germination and early-seedling stages under salt-stress conditions.

scholarly journals The efficacy of different seed priming agents for promoting sorghum germination under salt stress

PLoS ONE ◽  
2021 ◽  
Vol 16 (1) ◽  
pp. e0245505
Author(s):  
Xiaofei Chen ◽  
Ruidong Zhang ◽  
Yifan Xing ◽  
Bing Jiang ◽  
Bang Li ◽  
...  
Keyword(s):  
Salt Stress ◽  
Seed Germination ◽  
Germination Rate ◽  
Principal Component ◽  
Dry Weight ◽  
Seed Priming ◽  
Nacl Stress ◽  
Future Research ◽  
Fresh Weight ◽  
Positive Effects

Sorghum [Sorghum bicolor (L.) Moench] seed germination is sensitive to salinity, and seed priming is an effective method for alleviating the negative effects of salt stress on seed germination. However, few studies have compared the effects of different priming agents on sorghum germination under salt stress. In this study, we quantified the effects of priming with distilled water (HP), sodium chloride (NaCl), potassium chloride (KCl), calcium chloride (CaCl2), and polyethylene glycol (PEG) on sorghum seed germination under 150 mM NaCl stress. The germination potential, germination rate, germination index, vigor index, root length, shoot length, root fresh weight, shoot fresh weight, root dry weight, and shoot dry weight were significantly reduced by salt stress. Different priming treatments alleviated the germination inhibition caused by salt stress to varying degrees, and 50 mM CaCl2 was the most effective treatment. In addition, the mitigation effect of priming was stronger on root traits than on shoot traits. Mitigation efficacy was closely related to both the type of agent and the concentration of the solution. Principal component analysis showed that all concentrations of CaCl2 had higher scores and were clearly distinguished from other treatments based on their positive effects on all germination traits. The effects of the other agents varied with concentration. The priming treatments were divided into three categories based on their priming efficacy, and the 50, 100, and 150 mM CaCl2 treatments were placed in the first category. The 150 mM KCl, 10% PEG, HP, 150 mM NaCl, 30% PEG, and 50 mM KCl treatments were placed in the second category, and the 100 mM NaCl, 100 mM KCl, 20% PEG, and 50 mM NaCl treatments were least effective and were placed in the third category. Choosing appropriate priming agents and methods for future research and applications can ensure that crop seeds germinate healthily under saline conditions.

scholarly journals Effects of partial defoliation on the growth, ion relations and photosynthesis of Lycium chinense Mill. under salt stress

2015 ◽  
Vol 67 (4) ◽  
pp. 1185-1194 ◽  
Author(s):  
Yuan Guo ◽  
Qiong Yu ◽  
Xiaohui Feng ◽  
Zhixia Xie ◽  
Xiaojing Liu
Keyword(s):  
Salt Stress ◽  
Physiological Response ◽  
Electron Transport Rate ◽  
Dry Weight ◽  
Photochemical Quenching ◽  
Leaf Water Content ◽  
Lycium Chinense ◽  
Fresh Weight ◽  
Relative Growth ◽  
Ion Relations

In this study, we investigated the effects of artificial defoliation on the growth and physiological response of Lycium chinense Mill. to salt stress. Our results show that partial defoliation increases the plant relative growth rate, leaf water content and dry weight-based leaf Na+ content, and reduces the fresh weight-based leaf Na+ content under salt stress. In response to defoliation, the leaf Na+/Ca2+ and Na+/Mg2+ ratios were decreased, but the K+ content remained unchanged. The contents of ROS and MDA were decreased in defoliated plants. Net The photosynthetic rate (PN), stomatal conductance (gs), electron transport rate (ETR), actual photochemical quenching (?PSII) and photochemical quenching (qp) were enhanced by defoliation. Together, these findings indicate that partial defoliation mitigates the salt-induced growth inhibition and physiological damage in L. chinense.

scholarly journals Chlorophyll a fluorescence as indicative of the salt stress on Brassica napus L.

2011 ◽  
Vol 23 (4) ◽  
pp. 245-253 ◽  
Author(s):  
Marcos Antonio Bacarin ◽  
Sidnei Deuner ◽  
Fabio Sergio Paulino da Silva ◽  
Daniela Cassol ◽  
Diolina Moura Silva
Keyword(s):  
Salt Stress ◽  
Brassica Napus ◽  
Chlorophyll A ◽  
Chlorophyll A Fluorescence ◽  
Brassica Napus L

scholarly journals Effects of Light-Emitting Diodes on the Accumulation of Glucosinolates and Phenolic Compounds in Sprouting Canola (Brassica napus L.)

Foods ◽  
2019 ◽  
Vol 8 (2) ◽  
pp. 76 ◽  
Author(s):  
Chang Park ◽  
Nam Kim ◽  
Jong Park ◽  
Sook Lee ◽  
Jong-Won Lee ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Phenolic Compounds ◽  
Light Emitting Diode ◽  
Red Light ◽  
Dry Weight ◽  
Total Phenolic ◽  
Brassica Napus L ◽  
Light Emitting ◽  
Led Light ◽  
Sprout Growth

In this study, we investigated optimal light conditions for enhancement of the growth and accumulation of glucosinolates and phenolics in the sprouts of canola (Brassica napus L.). We found that the shoot lengths and fresh weights of red light-irradiated sprouts were higher than those of sprouts exposed to white, blue, and blue + red light, whereas root length was not notably different among red, blue, white, and blue + red light treatments. The accumulations of total glucosinolates in plants irradiated with white, blue, and red lights were not significantly different (19.32 ± 0.13, 20.69 ± 0.05, and 20.65 ± 1.70 mg/g dry weight (wt.), respectively). However, sprouts exposed to blue + red light contained the lowest levels of total glucosinolates (17.08 ± 0.28 mg/g dry wt.). The accumulation of total phenolic compounds was the highest in plants irradiated with blue light (3.81 ± 0.08 mg/g dry wt.), 1.33 times higher than the lowest level in plants irradiated with red light (2.87 ± 0.05 mg/g dry wt.). These results demonstrate that red light-emitting diode (LED) light is suitable for sprout growth and that blue LED light is effective in increasing the accumulation of glucosinolates and phenolics in B. napus sprouts.

scholarly journals Selection of the Root Endophyte Pseudomonas brassicacearum CDVBN10 as Plant Growth Promoter for Brassica napus L. Crops

Agronomy ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 1788
Author(s):  
Alejandro Jiménez-Gómez ◽  
Zaki Saati-Santamaría ◽  
Martin Kostovcik ◽  
Raúl Rivas ◽  
Encarna Velázquez ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Plant Growth ◽  
Dry Weight ◽  
Bacterial Endophytes ◽  
Chemical Fertilizers ◽  
Brassica Napus L ◽  
Bacterial Microbiome ◽  
Plant Growth Promoting ◽  
Growth Promoting ◽  
Pseudomonas Brassicacearum

Rapeseed (Brassica napus L.) is an important crop worldwide, due to its multiple uses, such as a human food, animal feed and a bioenergetic crop. Traditionally, its cultivation is based on the use of chemical fertilizers, known to lead to several negative effects on human health and the environment. Plant growth-promoting bacteria may be used to reduce the need for chemical fertilizers, but efficient bacteria in controlled conditions frequently fail when applied to the fields. Bacterial endophytes, protected from the rhizospheric competitors and extreme environmental conditions, could overcome those problems and successfully promote the crops under field conditions. Here, we present a screening process among rapeseed bacterial endophytes to search for an efficient bacterial strain, which could be developed as an inoculant to biofertilize rapeseed crops. Based on in vitro, in planta, and in silico tests, we selected the strain Pseudomonas brassicacearum CDVBN10 as a promising candidate; this strain produces siderophores, solubilizes P, synthesizes cellulose and promotes plant height in 5 and 15 days-post-inoculation seedlings. The inoculation of strain CDVBN10 in a field trial with no addition of fertilizers showed significant improvements in pod numbers, pod dry weight and shoot dry weight. In addition, metagenome analysis of root endophytic bacterial communities of plants from this field trial indicated no alteration of the plant root bacterial microbiome; considering that the root microbiome plays an important role in plant fitness and development, we suggest this maintenance of the plant and its bacterial microbiome homeostasis as a positive result. Thus, Pseudomonas brassicacearum CDVBN10 seems to be a good biofertilizer to improve canola crops with no addition of chemical fertilizers; this the first study in which a plant growth-promoting (PGP) inoculant specifically designed for rapeseed crops significantly improves this crop’s yields in field conditions.

scholarly journals RNAseq Analysis Reveals Altered Expression of Key Ion Transporters Causing Differential Uptake of Selective Ions in Canola (Brassica napus L.) Grown under NaCl Stress

Plants ◽  
2020 ◽  
Vol 9 (7) ◽  
pp. 891 ◽  
Author(s):  
Mobina Ulfat ◽  
Habib-ur-Rehman Athar ◽  
Zaheerud-din Khan ◽  
Hazem M. Kalaji
Keyword(s):  
Salt Stress ◽  
Brassica Napus ◽  
Differentially Expressed Genes ◽  
Nacl Stress ◽  
Utilization Efficiency ◽  
Differentially Expressed ◽  
Rna Seq ◽  
Salt Tolerant ◽  
Brassica Napus L ◽  
Salt Tolerant Cultivars

Salinity is one of the major abiotic stresses prevailing throughout the world that severely limits crop establishment and production. Every crop has an intra-specific genetic variation that enables it to cope with variable environmental conditions. Hence, this genetic variability is a good tool to exploit germplasms in salt-affected areas. Further, the selected cultivars can be effectively used by plant breeders and molecular biologists for the improvement of salinity tolerance. In the present study, it was planned to identify differential expression of genes associated with selective uptake of different ions under salt stress in selected salt-tolerant canola (Brassica napus L.) cultivar. For the purpose, an experiment was carried out to evaluate the growth response of different salt-sensitive and salt-tolerant canola cultivars. Plants were subjected to 200 mM NaCl stress. Canola cultivars—Faisal Canola, DGL, Dunkled, and CON-II—had higher growth than in cvs Cyclone, Ac-EXcel, Legend, and Oscar. Salt-tolerant cultivars were better able to maintain plant water status probably through osmotic adjustment as compared to salt-sensitive cultivars. Although salt stress increased shoot Na+ and shoot Cl− contents in all canola cultivars, salt-tolerant cultivars had a lower accumulation of these toxic nutrients. Similarly, salt stress reduced shoot K+ and Ca2+ contents in all canola cultivars, while salt-tolerant cultivars had a higher accumulation of K+ and Ca2+ in leaves, thereby having greater shoot K+/Na+ and Ca2+/Na+ ratios. Nutrient utilization efficiency decreased significantly in all canola cultivars due to the imposition of salt stress; however, it was greater in salt-tolerant cultivars—Faisal Canola, DGL, and Dunkled. Among four salt-tolerant canola cultivars, cv Dunkled was maximal in physiological attributes, and thus differentially expressed genes (DEGs) were assessed in it by RNA-seq analysis using next-generation sequencing (NGS) techniques. The differentially expressed genes (DEG) in cv Dunkled under salt stress were found to be involved in the regulation of ionic concentration, photosynthesis, antioxidants, and hormonal metabolism. However, the most prominent upregulated DEGs included Na/K transporter, HKT1, potassium transporter, potassium channel, chloride channel, cation exchanger, Ca channel. The RNA-seq data were validated through qRT-PCR. It was thus concluded that genes related to the regulation of ionic concentrate are significantly upregulated and expressed under salt stress, in the cultivar Dunkled.

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