Using Chou’s Pseudo Amino Acid Composition for Protein Remote Homology Detection

Bin Liu; Xiaolong Wang

doi:10.4236/eng.2013.510b032

Using Chou’s Pseudo Amino Acid Composition for Protein Remote Homology Detection

Engineering ◽

10.4236/eng.2013.510b032 ◽

2013 ◽

Vol 05 (10) ◽

pp. 149-153 ◽

Cited By ~ 1

Author(s):

Bin Liu ◽

Xiaolong Wang

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Homology Detection ◽

Pseudo Amino Acid Composition ◽

Remote Homology ◽

Remote Homology Detection

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Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis

Molecular Genetics and Genomics ◽

10.1007/s00438-015-1044-4 ◽

2015 ◽

Vol 290 (5) ◽

pp. 1919-1931 ◽

Cited By ~ 49

Author(s):

Bin Liu ◽

Junjie Chen ◽

Xiaolong Wang

Keyword(s):

Principal Component Analysis ◽

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Principal Component ◽

Component Analysis ◽

Homology Detection ◽

Pseudo Amino Acid Composition ◽

Remote Homology ◽

Remote Homology Detection

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Protein Remote Homology Detection by Combining Chou’s Pseudo Amino Acid Composition and Profile-Based Protein Representation

Molecular Informatics ◽

10.1002/minf.201300084 ◽

2013 ◽

Vol 32 (9-10) ◽

pp. 775-782 ◽

Cited By ~ 76

Author(s):

Bin Liu ◽

Xiaolong Wang ◽

Quan Zou ◽

Qiwen Dong ◽

Qingcai Chen

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Homology Detection ◽

Pseudo Amino Acid Composition ◽

Remote Homology ◽

Remote Homology Detection

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Pseudo Amino Acid Composition and its Applications in Bioinformatics, Proteomics and System Biology

Current Proteomics ◽

10.2174/157016409789973707 ◽

2009 ◽

Vol 6 (4) ◽

pp. 262-274 ◽

Cited By ~ 301

Author(s):

Kuo-Chen Chou

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

System Biology ◽

Pseudo Amino Acid Composition

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OligoPred: A web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2011.06.014 ◽

2011 ◽

Vol 30 ◽

pp. 129-134 ◽

Cited By ~ 27

Author(s):

Jian-Ding Qiu ◽

Sheng-Bao Suo ◽

Xing-Yu Sun ◽

Shao-Ping Shi ◽

Ru-Ping Liang

Keyword(s):

Wavelet Transform ◽

Amino Acid ◽

Discrete Wavelet Transform ◽

Amino Acid Composition ◽

Acid Composition ◽

Web Server ◽

Discrete Wavelet ◽

Pseudo Amino Acid Composition ◽

Oligomeric Proteins

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Prediction of Aptamer-Target Interacting Pairs with Pseudo-Amino Acid Composition

PLoS ONE ◽

10.1371/journal.pone.0086729 ◽

2014 ◽

Vol 9 (1) ◽

pp. e86729 ◽

Cited By ~ 20

Author(s):

Bi-Qing Li ◽

Yu-Chao Zhang ◽

Guo-Hua Huang ◽

Wei-Ren Cui ◽

Ning Zhang ◽

...

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition

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Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition

Biochemical and Biophysical Research Communications ◽

10.1016/j.bbrc.2005.09.117 ◽

2005 ◽

Vol 337 (3) ◽

pp. 752-756 ◽

Cited By ~ 121

Author(s):

Hong-Bin Shen ◽

Kuo-Chen Chou

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition

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MultiP-SChlo: multi-label protein subchloroplast localization prediction with Chou’s pseudo amino acid composition and a novel multi-label classifier

Bioinformatics ◽

10.1093/bioinformatics/btv212 ◽

2015 ◽

Vol 31 (16) ◽

pp. 2639-2645 ◽

Cited By ~ 70

Author(s):

Xiao Wang ◽

Weiwei Zhang ◽

Qiuwen Zhang ◽

Guo-Zheng Li

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Pseudo Amino Acid Composition ◽

Label Protein ◽

Localization Prediction

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Prediction and classification of protein subcellular location-sequence-order effect and pseudo amino acid composition

Journal of Cellular Biochemistry ◽

10.1002/jcb.10719 ◽

2003 ◽

Vol 90 (6) ◽

pp. 1250-1260 ◽

Cited By ~ 111

Author(s):

Kuo-Chen Chou ◽

Yu-Dong Cai

Keyword(s):

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Subcellular Location ◽

Order Effect ◽

Pseudo Amino Acid Composition ◽

Protein Subcellular Location

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Protein sequence analysis by incorporating modified chaos game and physicochemical properties into Chou's general pseudo amino acid composition

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2016.06.034 ◽

2016 ◽

Vol 406 ◽

pp. 105-115 ◽

Cited By ~ 12

Author(s):

Chunrui Xu ◽

Dandan Sun ◽

Shenghui Liu ◽

Yusen Zhang

Keyword(s):

Amino Acid ◽

Sequence Analysis ◽

Physicochemical Properties ◽

Amino Acid Composition ◽

Acid Composition ◽

Protein Sequence ◽

Protein Sequence Analysis ◽

Pseudo Amino Acid Composition ◽

Chaos Game

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Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2007.06.001 ◽

2007 ◽

Vol 248 (3) ◽

pp. 546-551 ◽

Cited By ~ 220

Author(s):

Xi-Bin Zhou ◽

Chao Chen ◽

Zhan-Chao Li ◽

Xiao-Yong Zou

Keyword(s):

Support Vector Machine ◽

Amino Acid ◽

Amino Acid Composition ◽

Acid Composition ◽

Support Vector ◽

Pseudo Amino Acid Composition

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