Area, isolation and climate explain the diversity of mammals on islands worldwide

Insular biodiversity is expected to be regulated differently than continental biota, but their determinants remain to be quantified at a global scale. We evaluated the importance of physical, environmental and historical factors on mammal richness and endemism across 5592 islands worldwide. We fitted generalized linear and mixed models to accommodate variation among biogeographic realms and performed analyses separately for bats and non-volants. Richness on islands ranged from one to 234 species, with up to 177 single island endemics. Diversity patterns were most consistently influenced by the islands’ physical characteristics. Area positively affected mammal diversity, in particular the number of non-volant endemics. Island isolation, both current and past, was associated with lower richness but greater endemism. Flight capacity modified the relative importance of past versus current isolation, with bats responding more strongly to current and non-volant mammals to past isolation. Biodiversity relationships with environmental factors were idiosyncratic, with a tendency for greater effects sizes with endemism than richness. The historical climatic change was positively associated with endemism. In line with theory, we found that area and isolation were among the strongest drivers of mammalian biodiversity. Our results support the importance of past conditions on current patterns, particularly of non-volant species.

Habitat type impacts small mammal diversity in the Ukaguru Mountains, Tanzania

We assessed the habitat association of the diversity and abundance of small mammals in the Ukaguru Mountains within the Eastern Arc Mountains, Tanzania. An estimation of the vegetation parameters and live-trapping of small mammals for three consecutive nights per month for 21 months were carried out in farmland, disturbed and intact forests. A total of 1196 individual small mammals comprising 13 species were captured. Species diversity and evenness in intact forest were much higher compared to disturbed forest. Principal component analysis (PCA) explained 87.7% of the variance with two factors. The study suggests vegetation and habitat disturbances are factors responsible for the observed diversity of small mammals in the Ukaguru Mountains. Mastomys natalensis, Mus triton and Praomys delectorum accounted for 90.0% of total captures. M. triton and M. natalensis were the most abundant in farmland with 46.8 and 42.8% of total captures respectively and associated with the herbaceous vegetation. P. delectorum correlated with litter depth and trees and accounted for 90.0 and 80.0% total captures in disturbed and intact forests respectively but the mean abundances in both habitats were not significantly different (p = 0.72).

Bats can reach 3626 m a.s.l. in Papua New Guinea: altitudinal range extensions for six rainforest bat species

Bats represent an important, but poorly known component of mammal diversity in Papua New Guinea (PNG). Our surveys in two altitudinal rainforest gradients recorded 43 bat species of which six (Dobsonia minor, D. praedatrix, Hipposideros calcaratus, H. maggietaylorae, Miniopterus australis, Miniopterus sp.) fell outside of their known altitudinal ranges. This enlargement could reflect the lack of past sampling, or a genuine range extension, potentially in response to climate change. Our study highlights the importance of baseline data on the altitudinal distribution of vertebrates, including bats, in PNG for the monitoring of their response to climate change and anthropogenic disturbance.

Biogeographical affinity shapes relationships between ecological and phylogenetic mammal diversity and associations with their environmental correlates in the Americas

We evaluate the role of biogeographical affinity in shaping relationships between ecological diversity as a proxy of functional diversity and phylogenetic diversity and their association with environmental variation, across tropical and temperate latitudes of the Americas. If environmental niches are evolutionarily conserved, high mammal taxa of tropical and temperate affinity will show consistent differences in these relationships. Accordingly, mammal groups of tropical affinity (old-autochthonous: marsupials and xenarthrans; and mid-Cenozoic immigrants: hystricognaths and primates) show stronger positive correlations between ecological and phylogenetic diversity within the tropics than those from extra-tropical latitudes where newcomers from North America (artiodactyls) show the strongest positive correlations. The other group of newcomers (carnivorans), however, show a peak in the association that include both tropical and extra-tropical latitudes of South America. Climate predominates over topographic relief in structuring the spatial variation of ecological and phylogenetic mammal diversity. The environmental structuring of ecological and phylogenetic mammal diversity across the Americas is more complex than expected from a latitudinal diversity gradient. Dry seasonal tropical habitats generated considerable heterogeneity in relationships between ecological and phylogenetic diversity and their association with environmental correlates. We conclude that biogeographical affinity and regional associations between the different components of diversity and the environment should be considered for a comprehensive explanation of covariation between ecological and phylogenetic diversity on a continental scale.

Completeness of rapid assessments of medium and large mammal diversity in the northwestern Amazon in Colombia

ABSTRACT Rapid assessments are the most common information source on biodiversity in the northwestern Amazon in Colombia due to limited resources and logistic constraints. These assessments are essential for decision-making on environmental policies in this region, that has been strongly impacted by the transformation of its natural ecosystems. Several local camera-trapping rapid assessments of medium and large-sized mammals (MLM) have been conducted in the Colombian Amazon, but they are difficult to compare. We analyzed information of 16 of these rapid assessments of MLM to provide the first list of MLM in the northwestern Amazon in Colombia. We also evaluated the accuracy of four estimators (ICE, Chao-2, Jackknife-1, and Jackknife-2), and the minimum sampling effort for the estimation of MLM richness in local surveys in the region. We report 26 species of MLM for the Colombian Amazon (between five and 13 species per locality), which is an underestimation of MLM richness in the region. The best estimator of MLM richness was the Jackknife-1, due to its precision and the lower influence of singletons. We recommend a minimum sampling effort of 350 camera trap-days. Although rapid assessments do not allow a robust estimation of MLM richness, they record the most common species (or core species) per locality and their abundance variation. The evaluation of the effect of habitat transformation on MLM and the estimation of population parameters of rare species require more intensive studies.

Small Mammals in Forests of Romania: Habitat Type Use and Additive Diversity Partitioning

Small mammals are key components of forest ecosystems, playing vital roles for numerous groups of forest organisms: they exert bottom-up and top-down regulatory effects on vertebrate and invertebrate populations, respectively; they are fungus- and seed-dispersers and bioturbators. Therefore, preserving or restoring the diversity of small mammal communities may help maintain the functions of these ecosystems. In Romania, a country with low-intensity forest management and a high percentage of natural forests compared to other European countries, an overview of forest small mammal diversity and habitat type use is lacking, and our study aimed to fill this gap. We also aimed to partition the total small mammal diversity of Romanian forests into the alpha (plot-level), beta, and delta (among forest types) diversities, as well as further partition beta diversity into its spatial (among plots) and temporal (among years) components. We surveyed small mammals by live trapping in eight types of forest across Romania. We found that small mammal abundance was significantly higher in lowland than in mountain forests, but species richness was similar, being associated with the diversity of tree canopy, with the highest values in mixed forests. In contrast, small mammal heterogeneity was related to overall habitat heterogeneity. As predicted, community composition was most distinct in poplar plantations, where forest specialists coexist with open habitat species. Most of the diversity was represented by alpha diversity. Because of strong fluctuations in population density of dominant rodents, the temporal component of beta heterogeneity was larger than the spatial component, but species richness also presented an important temporal turnover. Our results show the importance of the time dimension in the design of the surveys aiming at estimating the diversity of small mammal communities, both at the local and regional scales.

The Global Virome in One Network (VIRION): an atlas of vertebrate-virus associations

Data cataloguing viral diversity on Earth have been fragmented across sources, disciplines, formats, and various degrees of open collation, posing challenges for research on macroecology, evolution, and public health. Here, we solve this problem by establishing a dynamically-maintained database of vertebrate-virus associations, called The Global Virome in One Network (VIRION). The VIRION database has been assembled through both reconciliation of static datasets and integration of dynamically-updated databases. These data sources are all harmonized against one taxonomic backbone, including metadata on host and virus taxonomic validity and higher classification; additional metadata on sampling methodology and evidence strength are also available in a harmonized format. In total, the VIRION database is the largest open-source, open-access database of its kind, with roughly half a million unique records that include 9,521 resolved virus "species" (of which 1,661 are ICTV ratified), 3,692 resolved vertebrate host species, and 23,147 unique interactions between taxonomically-valid organisms. Together, these data cover roughly a quarter of mammal diversity, a tenth of bird diversity, and ˜6% of the estimated total diversity of vertebrates, and a much larger proportion of their virome than any previous database. We show how these data can be used to test hypotheses about microbiology, ecology, and evolution, and make suggestions for best practices that address the unique mix of evidence that coexists in these data.

The value of a small urban green area to the medium and large-sized mammals conservation

Brazil presents the biggest mammal diversity in the world, 755 species, of which 110 are classified under some degree of threat. In the São Paulo State is an estimated 350 taxa richness, however, this number can be even higher due to the gap of sampling over large extensions. In addition, many urban green areas are not studied because their value is underestimated for biodiversity conservation. In this way, the present study aimed to survey the medium and large-sized terrestrial mammals in a Municipal Conservation Unit located in the urban area of Franca, SP. Using cameras trap, sand plots, and active search, in the period between May and July 2019, 16 mammals were sampled. The highest number of species was identified through sand plots (12), followed by active search (7) and cameras trap (4). The sampled community is mostly composed of opportunistic and generalist species with few predators. Among species found, the maned wolf (Chrysocyon brachyurus) is classified nationally as vulnerable to extinction. Despite the significant number of sampled species, the species accumulation curve obtained did not reach its asymptote. Thus, it is concluded that Zoobotanic Garden, despite suffering strong anthropic pressure, develop an important role in the regional medium and large-sized terrestrial mammals conservation, acting as a refuge area for these species.