Genome-wide expression analysis of genes affected by amino acid sensor Ssy1p in Saccharomyces cerevisiae

2002 ◽  
Vol 41 (2) ◽  
pp. 63-72 ◽  
Author(s):  
Yukiko Kodama ◽  
Fumihiko Omura ◽  
Keiko Takahashi ◽  
Katsuhiko Shirahige ◽  
Toshihiko Ashikari
2003 ◽  
Vol 69 (12) ◽  
pp. 7535-7540 ◽  
Author(s):  
Vincent J. Higgins ◽  
Peter J. Rogers ◽  
Ian W. Dawes

ABSTRACT Genome-wide expression analysis of an industrial strain of Saccharomyces cerevisiae identified the YOR387c and YGL258w homologues as highly inducible in zinc-depleted conditions. Induction was specific for zinc deficiency and was dependent on Zap1p. The results indicate that these sequences may be valuable molecular markers for detecting zinc deficiency in industrial fermentations.


2021 ◽  
Vol 690 (1) ◽  
pp. 012020
Author(s):  
Taikui Zhang ◽  
Xiaozhen Liu ◽  
Xianbin Huang ◽  
Zhiming Zhang ◽  
Hanyao Zhang

2007 ◽  
Vol 2 (6) ◽  
pp. 1399-1413 ◽  
Author(s):  
Marnik Vuylsteke ◽  
Johan D Peleman ◽  
Michiel JT van Eijk

2016 ◽  
Vol 15 (4) ◽  
Author(s):  
K.J. Lee ◽  
S.-J. Kwon ◽  
J.E. Hwang ◽  
S.M. Han ◽  
I. Jung ◽  
...  

2007 ◽  
Vol 28 (2) ◽  
pp. 551-563 ◽  
Author(s):  
Zhengchang Liu ◽  
Janet Thornton ◽  
Mário Spírek ◽  
Ronald A. Butow

ABSTRACT Cells of the budding yeast Saccharomyces cerevisiae sense extracellular amino acids and activate expression of amino acid permeases through the SPS-sensing pathway, which consists of Ssy1, an amino acid sensor on the plasma membrane, and two downstream factors, Ptr3 and Ssy5. Upon activation of SPS signaling, two transcription factors, Stp1 and Stp2, undergo Ssy5-dependent proteolytic processing that enables their nuclear translocation. Here we show that Ptr3 is a phosphoprotein whose hyperphosphorylation is increased by external amino acids and is dependent on Ssy1 but not on Ssy5. A deletion mutation in GRR1, encoding a component of the SCFGrr1 E3 ubiquitin ligase, blocks amino acid-induced hyperphosphorylation of Ptr3. We found that two casein kinase I (CKI) proteins, Yck1 and Yck2, previously identified as positive regulators of SPS signaling, are required for hyperphosphorylation of Ptr3. Loss- and gain-of-function mutations in PTR3 result in decreased and increased Ptr3 hyperphosporylation, respectively. We found that a defect in PP2A phosphatase activity leads to the hyperphosphorylation of Ptr3 and constitutive activation of SPS signaling. Two-hybrid analysis revealed interactions between the N-terminal signal transduction domain of Ssy1 with Ptr3 and Yck1. Our findings reveal that CKI and PP2A phosphatase play antagonistic roles in SPS sensing by regulating Ptr3 phosphorylation.


2018 ◽  
Vol 85 (3) ◽  
pp. 375-387 ◽  
Author(s):  
Masoud Ahmadi-Afzadi ◽  
Mathilde Orsel ◽  
Sandra Pelletier ◽  
Maryline Bruneau ◽  
Estelle Proux-Wéra ◽  
...  

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