Genome-wide analysis and expression patterns of ZF-HD transcription factors under different developmental tissues and abiotic stresses in Chinese cabbage

2015 ◽  
Vol 291 (3) ◽  
pp. 1451-1464 ◽  
Author(s):  
Wenli Wang ◽  
Peng Wu ◽  
Ying Li ◽  
XiLin Hou
Keyword(s):  
Transcription Factors ◽  
Chinese Cabbage ◽  
Abiotic Stresses ◽  
Expression Patterns ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
pp. 33 ◽  
Author(s):  
Jing Ma ◽  
Meng-Yao Li ◽  
Feng Wang ◽  
Jun Tang ◽  
Ai-Sheng Xiong
Keyword(s):  
Transcription Factors ◽  
Chinese Cabbage ◽  
Abiotic Stresses ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide analysis of HSF family transcription factors and their responses to abiotic stresses in two Chinese cabbage varieties

2013 ◽  
Vol 36 (2) ◽  
pp. 513-523 ◽  
Author(s):  
Jing Ma ◽  
Zhi-Sheng Xu ◽  
Feng Wang ◽  
Guo-Fei Tan ◽  
Meng-Yao Li ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Chinese Cabbage ◽  
Abiotic Stresses ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-Wide Analysis of C2H2 Zinc-Finger Family Transcription Factors and Their Responses to Abiotic Stresses in Poplar (Populus trichocarpa)

PLoS ONE ◽  
2015 ◽  
Vol 10 (8) ◽  
pp. e0134753 ◽  
Author(s):  
Quangang Liu ◽  
Zhanchao Wang ◽  
Xuemei Xu ◽  
Haizhen Zhang ◽  
Chenghao Li
Keyword(s):  
Transcription Factors ◽  
Zinc Finger ◽  
Abiotic Stresses ◽  
Populus Trichocarpa ◽  
C2h2 Zinc Finger ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Expression Profiling of the Dof Gene Family Under Abiotic Stresses in Spinach

2021 ◽  
Author(s):  
Hongying Yu ◽  
Yaying Ma ◽  
Yijing Lu ◽  
Jingjing Yue ◽  
Ray Ming
Keyword(s):  
Transcription Factors ◽  
Gene Family ◽  
Stress Responses ◽  
Expression Profiling ◽  
Abiotic Stresses ◽  
Specific Expression ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
A Genome ◽  
Male Flowers

Abstract DNA-binding with one finger (Dof) transcription factors are plant-specific transcription factors involved in numerous pathways of plant development, especially in respond to abiotic stresses. Although genome-wide analysis of this gene family has been performed in many species, Dof genes in spinach have not been thoroughly analyzed. We performed a genome-wide analysis and characterization of Dof gene family in spinach. Twenty two Dof genes were identified and classified into four groups with nine subgroups, which was further corroborated by gene structure and motif analyses. Ka/Ks analysis revealed that SoDofs were subjected to purify selection. Using Cis-acting elements analysis, SoDofs were involved in plant growth and development, plant hormones and stress responses. Expression profiling demonstrated that SoDofs expressed in leaf and inflorescence, and responded to cold, heat, and drought stresses. SoDof22 expressed the highest level in male flowers and under cold stress. These results provided a genome-wide analysis of SoDof genes, their gender- and tissue-specific expression, and response to abiotic stresses. The knowledge and resources gained from these analyses will benefit spinach improvement.

scholarly journals Genome-Wide Analysis of Myeloblastosis-Related Genes in Brassica napus L. and Positive Modulation of Osmotic Tolerance by BnMRD107

2021 ◽  
Vol 12 ◽  
Author(s):  
Jian Li ◽  
Keyun Lin ◽  
Shuai Zhang ◽  
Jian Wu ◽  
Yujie Fang ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Brassica Napus ◽  
Expression Profiles ◽  
Expression Patterns ◽  
Regulatory Elements ◽  
Functional Study ◽  
Evolutionary Analysis ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
A Genome

Myeloblastosis (MYB)-related transcription factors comprise a large subfamily of the MYB family. They play significant roles in plant development and in stress responses. However, MYB-related proteins have not been comprehensively investigated in rapeseed (Brassica napus L.). In the present study, a genome-wide analysis of MYB-related transcription factors was performed in rapeseed. We identified 251 Brassica napus MYB (BnMYB)-related members, which were divided phylogenetically into five clades. Evolutionary analysis suggested that whole genome duplication and segmental duplication events have played a significant role in the expansion of BnMYB-related gene family. Selective pressure of BnMYB-related genes was estimated using the Ka/Ks ratio, which indicated that BnMYB-related genes underwent strong purifying selection during evolution. In silico analysis showed that various development-associated, phytohormone-responsive, and stress-related cis-acting regulatory elements were enriched in the promoter regions of BnMYB-related genes. Furthermore, MYB-related genes with tissue or organ-specific, stress-responsive expression patterns were identified in B. napus based on temporospatial and abiotic stress expression profiles. Among the stress-responsive MYB-related genes, BnMRD107 was strongly induced by drought stress, and was therefore selected for functional study. Rapeseed seedlings overexpressing BnMRD107 showed improved resistance to osmotic stress. Our findings not only lay a foundation for further functional characterization of BnMYB-related genes, but also provide valuable clues to determine candidate genes for future genetic improvement of B. napus.

scholarly journals Genome-Wide Characterization and Expression Profiling of Squamosa Promoter Binding Protein-like (SBP) Transcription Factors in Wheat (Triticum aestivum L.)

Agronomy ◽  
2019 ◽  
Vol 9 (9) ◽  
pp. 527 ◽  
Author(s):  
Song ◽  
Ma ◽  
Yin ◽  
Yang ◽  
He ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Hexaploid Wheat ◽  
Abiotic Stresses ◽  
Binding Protein ◽  
Expression Patterns ◽  
Local Alignment ◽  
Composition Analysis ◽  
Motif Analysis ◽  
Genome Wide ◽  
Squamosa Promoter Binding Protein

Transcription factors (TFs) play fundamental roles in the developmental processes of all living organisms. Squamosa Promoter Binding Protein-like (SBP/SBP-Box) is a major family of plant-specific TFs, which plays important roles in multiple processes involving plant growth and development. While some work has been done, there is a lot more that is yet to be discovered in the hexaploid wheat SBP (TaSBP) family. With the completion of whole genome sequencing, genome-wide analysis of SBPs in common hexaploid wheat is now possible. In this study, we used protein–protein Basic Local Alignment Search Tool (BLASTp) to hunt the newly released reference genome sequence of hexaploid wheat (Chinese spring). Seventy-four TaSBP proteins (belonging to 56 genes) were identified and clustered into five groups. Gene structure and motif analysis indicated that most TaSBPs have relatively conserved exon–intron arrangements and motif composition. Analysis of transcriptional data showed that many TaSBP genes responded to some biological and abiotic stresses with different expression patterns. Moreover, three TaSBP genes were generally expressed in the majority of tissues throughout the wheat growth and also responded to many environmental biotic and abiotic stresses. Collectively, the detailed analyses presented here will help in understanding the roles of the TaSBP and also provide a reference for the further study of its biological function in wheat.

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