Heritability of human hookworm infection in Papua New Guinea

Parasitology ◽  
2008 ◽  
Vol 135 (12) ◽  
pp. 1407-1415 ◽  
Author(s):  
L. PH. BREITLING ◽  
A. J. WILSON ◽  
A. RAIKO ◽  
M. LAGOG ◽  
P. SIBA ◽  
...  
Keyword(s):  
Papua New Guinea ◽  
Variance Components ◽  
New Guinea ◽  
Epidemiological Data ◽  
Genetic Effects ◽  
Hookworm Infection ◽  
Narrow Sense Heritability ◽  
Variance Components Analysis ◽  
Mean And Variance ◽  
Additive Genetic Effects

SUMMARYHookworms infect approximately 740 million humans worldwide and are an important cause of morbidity. The present study examines the role of additive genetic effects in determining the intensity of hookworm infection in humans, and whether these effects vary according to the sex of the host. Parasitological and epidemiological data for a population of 704 subjects in Papua New Guinea were used in variance components analysis. The ‘narrow-sense’ heritability of hookworm infection was estimated as 0·15±0·04 (P<0·001), and remained significant when controlling for shared environmental (household) effects. Allowing the variance components to vary between the sexes of the human host consistently revealed larger additive genetic effects in females than in males, reflected by heritabilities of 0·18 in females and 0·08 in males in a conservative model. Household effects were also higher in females than males, although the overall household effect was not significant. The results indicate that additive genetic effects are an important determinant of the intensity of human hookworm infection in this population. However, despite similar mean and variance of intensity in each sex, the factors responsible for generating variation in intensity differ markedly between males and females.

Combining Ability of Plant Height and Yield components in Indian Mustard (Brassica junceaL.Czern & Coss.) under Salt affected Soil using Line×Tester Analysis

2016 ◽  
Vol 3 (2) ◽  
Author(s):  
SHAILESH CHAND GAUTAM ◽  
MP Chauhan
Keyword(s):  
Plant Height ◽  
Seed Yield ◽  
Combining Ability ◽  
Yield Components ◽  
Indian Mustard ◽  
Heritability Estimate ◽  
Genetic Effects ◽  
Narrow Sense ◽  
Narrow Sense Heritability ◽  
Additive Genetic Effects

Line × tester analysis of twenty lines and three testers of Indian mustard (Brassica juncea L. Czern & Coss.) cultivars were used to estimate general combining ability (GCA), specific combining ability (SCA) effects, high parent heterosis and narrow-sense heritability estimate for plant height, yield components and seed yield. Significant variance of line x tester for the traits like pods per plant and seed yield indicating non additive genetic effects have important role for controlling these traits. Significant mean squares of parents v/s crosses which are indicating significant average heterosis were also significant for all the traits except seeds per pod. High narrow-sense heritability estimates for all the traits except seeds per pod exhibited the prime importance of additive genetic effects for these traits except seeds per pod. Most of the crosses with negative SCA effect for plant height had at least one parent with significant negative or negative GCA effect for this trait. For most of the traits except pods per plant, the efficiency of high parent heterosis effect was more than SCA effect for determining superior cross combinations.

scholarly journals Genomic prediction with non-additive effects in beef cattle: stability of variance component and genetic effect estimates against population size

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Akio Onogi ◽  
Toshio Watanabe ◽  
Atsushi Ogino ◽  
Kazuhito Kurogi ◽  
Kenji Togashi
Keyword(s):  
Population Size ◽  
Genomic Prediction ◽  
Variance Components ◽  
Variance Component ◽  
Predictive Accuracy ◽  
Genetic Effect ◽  
Genetic Effects ◽  
Additive Effects ◽  
Additive Variance ◽  
Additive Genetic Effects

Abstract Background Genomic prediction is now an essential technology for genetic improvement in animal and plant breeding. Whereas emphasis has been placed on predicting the breeding values, the prediction of non-additive genetic effects has also been of interest. In this study, we assessed the potential of genomic prediction using non-additive effects for phenotypic prediction in Japanese Black, a beef cattle breed. In addition, we examined the stability of variance component and genetic effect estimates against population size by subsampling with different sample sizes. Results Records of six carcass traits, namely, carcass weight, rib eye area, rib thickness, subcutaneous fat thickness, yield rate and beef marbling score, for 9850 animals were used for analyses. As the non-additive genetic effects, dominance, additive-by-additive, additive-by-dominance and dominance-by-dominance effects were considered. The covariance structures of these genetic effects were defined using genome-wide SNPs. Using single-trait animal models with different combinations of genetic effects, it was found that 12.6–19.5 % of phenotypic variance were occupied by the additive-by-additive variance, whereas little dominance variance was observed. In cross-validation, adding the additive-by-additive effects had little influence on predictive accuracy and bias. Subsampling analyses showed that estimation of the additive-by-additive effects was highly variable when phenotypes were not available. On the other hand, the estimates of the additive-by-additive variance components were less affected by reduction of the population size. Conclusions The six carcass traits of Japanese Black cattle showed moderate or relatively high levels of additive-by-additive variance components, although incorporating the additive-by-additive effects did not improve the predictive accuracy. Subsampling analysis suggested that estimation of the additive-by-additive effects was highly reliant on the phenotypic values of the animals to be estimated, as supported by low off-diagonal values of the relationship matrix. On the other hand, estimates of the additive-by-additive variance components were relatively stable against reduction of the population size compared with the estimates of the corresponding genetic effects.

scholarly journals Accelerating Genetic Gain in Sugarcane Breeding Using Genomic Selection

Agronomy ◽  
2020 ◽  
Vol 10 (4) ◽  
pp. 585 ◽  
Author(s):  
Seema Yadav ◽  
Phillip Jackson ◽  
Xianming Wei ◽  
Elizabeth M. Ross ◽  
Karen Aitken ◽  
...  
Keyword(s):  
Genomic Selection ◽  
Genetic Gain ◽  
Cycle Length ◽  
Primary Source ◽  
Genetic Effects ◽  
Breeding Cycle ◽  
Narrow Sense Heritability ◽  
Breeding Values ◽  
Sugarcane Breeding ◽  
Additive Genetic Effects

Sugarcane is a major industrial crop cultivated in tropical and subtropical regions of the world. It is the primary source of sugar worldwide, accounting for more than 70% of world sugar consumption. Additionally, sugarcane is emerging as a source of sustainable bioenergy. However, the increase in productivity from sugarcane has been small compared to other major crops, and the rate of genetic gains from current breeding programs tends to be plateauing. In this review, some of the main contributors for the relatively slow rates of genetic gain are discussed, including (i) breeding cycle length and (ii) low narrow-sense heritability for major commercial traits, possibly reflecting strong non-additive genetic effects involved in quantitative trait expression. A general overview of genomic selection (GS), a modern breeding tool that has been very successfully applied in animal and plant breeding, is given. This review discusses key elements of GS and its potential to significantly increase the rate of genetic gain in sugarcane, mainly by (i) reducing the breeding cycle length, (ii) increasing the prediction accuracy for clonal performance, and (iii) increasing the accuracy of breeding values for parent selection. GS approaches that can accurately capture non-additive genetic effects and potentially improve the accuracy of genomic estimated breeding values are particularly promising for the adoption of GS in sugarcane breeding. Finally, different strategies for the efficient incorporation of GS in a practical sugarcane breeding context are presented. These proposed strategies hold the potential to substantially increase the rate of genetic gain in future sugarcane breeding.

scholarly journals Heterobeltiosis and interrelationship of some of important quantitative traits in oilseed rape genotypes

2019 ◽  
Vol 4 (1) ◽  
pp. 591-598
Author(s):  
Valiollah Rameeh
Keyword(s):  
Plant Height ◽  
Oilseed Rape ◽  
Seed Yield ◽  
Seed Weight ◽  
Selection Criterion ◽  
Yield Component ◽  
Genetic Effects ◽  
Narrow Sense Heritability ◽  
Additive Genetic Effects ◽  
Half Diallel

AbstractHalf diallel crosses of eight spring genotypes of oilseed rape (Brassica napus L.) were considered to evaluate heterobeltiosis effects of plant height, yield component characters, seed yield and harvest index. Significant mean squares of general and specific combining abilities (GCA and SCA) were determined for all the traits except 1000-seed weight demonstrating prominence of additive and non additive genetic effects for the mentioned traits. Narrow-sense heritability estimates were high for siliquae on main raceme and 1000-seed weight representing the major importance of additive genetic effects for the characters. Most of the crosses with significant positive high parent heterosis for seed yield had also significant heterotic effects for siliquae per plant; therefore, this trait can be considered as indirect selection criterion for enhancing seed yield. Seed yield was significantly correlated with the traits including plant height, siliquae on main raceme and siliquae per plant based on mean performances of the traits and this result was confirmed with correlations based on heterobeltiosis. The crosses including L41×LF2 and L31×L401 with highly significant heterobeltiosis estimates of grain yield were superior combinations for breeding this trait. which proved good specific combiners for most of the traits.

scholarly journals Line × tester analysis in rapeseed: Identification of superior parents and combinations for seed yield and its components

2016 ◽  
Vol 1 (1) ◽  
Author(s):  
Valiollah Rameeh
Keyword(s):  
Seed Yield ◽  
Combining Ability ◽  
Selection Criterion ◽  
Genetic Effects ◽  
Narrow Sense Heritability ◽  
Mean Values ◽  
Early Maturing ◽  
Additive Genetic Effects ◽  
Pod Length ◽  
Additive Genes

AbstractThe objectives of this research were to investigate the genetic structure of the 20 F1s rapeseed hybrids established from five female moderate maturing lines and four early maturing male testers, determine parents showing general combining ability (GCA) and assess crosses demonstrating specific combining ability (SCA). Significant mean squares of lines and testers determined GCA and confirmed the presence of additive genes that were influencing the traits, while the significance of line×tester interactions indicated the importance of SCA of parents and demonstrated the importance of dominance or non-additive genetic effects. Significant variance of parents vs. crosses revealed significant average heterosis for all the traits except first pod height and seeds per pod. High narrow-sense heritability estimates for number of branches and pod length indicated the importance of additive genetic effects for these traits. Significantly positive correlation was exhibited between GCA effects on pods on main raceme and seed yield and, therefore, the GCA effect on pods on main raceme can be used as indirect selection criterion for improvement of seed yield. The crosses L41×Foma2, Zafar×R42 and L22B×R38 recorded significant positive SCA effects and high mean values of seed yield of 3400, 3311.3 and 2904.2 kg ha-1, respectively.

scholarly journals Reinfection with hookworm after chemotherapy in Papua New Guinea

Parasitology ◽  
1993 ◽  
Vol 106 (4) ◽  
pp. 379-385 ◽  
Author(s):  
R. J. Quinnell ◽  
A. F. G. Slater ◽  
P. Tighe ◽  
E. A. Walsh ◽  
A. E. Keymer ◽  
...  
Keyword(s):  
Papua New Guinea ◽  
Geometric Mean ◽  
New Guinea ◽  
Arithmetic Mean ◽  
Host Age ◽  
Hookworm Infection ◽  
Necator Americanus ◽  
Rural Village ◽  
Pre Treatment

SUMMARYReinfection with hookworm (Necator americanus) following chemotherapy was studied over 2 years in a rural village in Madang Province, Papua New Guinea. The prevalence of hookworm infection had returned to pre-treatment levels after 2 years, and the geometric mean hookworm burden had returned to 58 % of the pre-treatment value. The rate of acquisition of adult worms was independent of host age, and was estimated as a geometric mean of 2·9–3·3 worms/host/year (arithmetic mean 7·9–8·9 worms/host/year). There was significant predisposition to hookworm infection; the strength of this predisposition did not vary significantly between age or sex classes.

Predisposition to hookworm infection in Papua New Guinea

2001 ◽  
Vol 95 (2) ◽  
pp. 139-142 ◽  
Author(s):  
R.J. Quinnell ◽  
J. Griffin ◽  
M.A. Nowell ◽  
A. Raiko ◽  
D.I. Pritchard
Keyword(s):  
Papua New Guinea ◽  
New Guinea ◽  
Hookworm Infection

scholarly journals Epidemiology and immunology of Necator americanus infection in a community in Papua New Guinea: humoral responses to excretory-secretory and cuticular collagen antigens

Parasitology ◽  
1990 ◽  
Vol 100 (2) ◽  
pp. 317-326 ◽  
Author(s):  
D. I. Pritchard ◽  
R. J. Quinnell ◽  
A. F. G. Slater ◽  
P. G. McKean ◽  
D. D. S. Dale ◽  
...  
Keyword(s):  
Papua New Guinea ◽  
Negative Binomial ◽  
Helminth Infection ◽  
New Guinea ◽  
Hookworm Infection ◽  
Intensity Of Infection ◽  
Necator Americanus ◽  
Rural Village ◽  
Ancylostoma Duodenale ◽  
Humoral Responses

SUMMARYBaseline data from an immuno-epidemiological study of hookworm infection in a rural village in Madang Province, Papua New Guinea are reported. Necator americanus was found to be the commonest helminth infection, with a prevalence of near 100% and intensity of 40 worms per host in adults. Enterobius vermicularis, Ascaris lumbricoides and Trichuris trichiura were also present, at prevalences of 53, 10 and 3% respectively; Ancylostoma duodenale was absent. The frequency distribution of N. americanus was highly over-dispersed, and was well described by a negative binomial distribution with aggregation parameter, k, of 0·370. Intensity of infection was significantly related to host age, but did not differ between the sexes. Haemoglobin levels and haematocrit values were indicative of anaemia in the community, but were unrelated to hookworm infection. Levels of antibodies (IgG, IgA and 1gM combined) against adult Necator cuticular collagen and excretory-secretory (ES) products were determined.

scholarly journals Combining ability and heritability estimates of main agronomic characters in rapeseed breeding lines using line × tester analysis

2012 ◽  
Vol 57 (3) ◽  
pp. 111-120 ◽  
Author(s):  
Valiollah Rameeh
Keyword(s):  
Seed Yield ◽  
Combining Ability ◽  
Yield Components ◽  
Seed Weight ◽  
Oil Content ◽  
Genetic Effects ◽  
Narrow Sense Heritability ◽  
Breeding Lines ◽  
Heritability Estimates ◽  
Additive Genetic Effects

To estimate the general and specific combining ability (GCA and SCA) effects of plant height, yield components, seed yield and oil content, three testers and six lines of spring type of rapeseed varieties were crossed using line ? tester fashion. Significant mean squares of parents and crosses for all the traits indicated significant genetic variation among the parents and their F1 crosses. Significant mean squares of parents vs crosses revealed significant average heterosis for all the traits except seeds per pod, 1000-seed weight and oil content. High narrow-sense heritability estimates for all the traits except seeds per pod, indicating the importance of additive genetic effects for these traits. Due to more importance of additive genetic effects for most of the traits, only a few of the crosses exhibited significant SCA effects. A significant positive correlation between seed yield and some of yield components including pods on main axis, pods per plant and 1000-seed weight indicates that these traits can be used as suitable selection criteria for improving of seed yield. The crosses including Opt ? R01, RG06 ? R01, RG06 ? R08 and RGS3 ? R08 with 3241.91, 3213.68, 3334.28 and 3237.45 kg ha-1 of seed yield detected as prior combinations for improving of this trait and all of these combinations had also positive SCA effect for this trait.

scholarly journals Combining ability of nitrogen deficiency stress indices for plant height in rapeseed varieties

2013 ◽  
Vol 58 (1) ◽  
pp. 19-30 ◽  
Author(s):  
Valiollah Rameeh
Keyword(s):  
Stress Tolerance ◽  
Plant Height ◽  
Combining Ability ◽  
Geometric Mean ◽  
Nitrogen Deficiency ◽  
Genetic Effects ◽  
Tolerance Index ◽  
Narrow Sense Heritability ◽  
Stress Indices ◽  
Additive Genetic Effects

Although an average plant height is more preferable in most of agronomic crops, less reduction of this trait in stress condition makes yield components and seed yield sustainable in rapeseed varieties. Combining ability, heterosis and heritability of plant height at application and non-application of nitrogen environments (Hp and Hs, respectively) and its related stress tolerance indices were detected in half F2 diallel crosses of six spring rapeseed varieties. Significant mean squares of general and specific combining abilities (GCA and SCA) were detected for Hp, Hs, mean productivity (MP), geometric mean productivity (GMP) and stress tolerance index (STI), indicating the importance of additive and non-additive genetic effects for them. A high narrow-sense heritability estimate was exhibited for STI, emphasizing the prime importance of additive genetic effects for this stress tolerance index. A significant correlation among Hp, Hs, MP, GMP and STI showed the efficiency of these stress indices for improving plant height in plant breeding programme. In comparison to SCA effects, most of the crosses had significant high parent heterosis for Hp, Hs and all the stress indices. RGS003 with a significant positive GCA effect of Hs was considered as a suitable parent for improving this trait and most of the combinations of this genotype had significant negative SCA effects.

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